Characterization and Antitumor Activity of Camptothecin from Endophytic Fungus Fusarium Solani Isolated from Camptotheca Acuminate
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Nyssa Aquatica, Water Tupelo1 Michael G
FOR 262 Nyssa aquatica, Water Tupelo1 Michael G. Andreu, Melissa H. Friedman, Mary McKenzie, and Heather V. Quintana2 Family entire or smooth margins that sometimes have serrations (teeth). The thick leaves are shiny dark green on the topside Cornaceae, dogwood family. and paler and pubescent on the underside. The trunk is buttressed at the base and its bark is dark brown or dark Genus gray and splits into finely scaled ridges. In the spring, green Nyssa was the name of an ancient Greek mythological water flowers appear in clusters on long stalks. Male and female goddess. flowers appear on separate trees. The male flowers are about ¼ inch long and appear in clusters, while the female flowers Species are about ¾ inch long and are solitary. Oblong shaped drupes (fleshy fruits that usually contain one seed) about ½ The species name, aquatica, stems from Latin and means inch to 1½ inches long ripen in early fall and are dark blue “of water.” to dark purple. Common Name Water Tupelo, Cotton Gum The word “tupelo” is said to have stemmed from the language of the Creek tribe and means “swamp tree.” The other common name, “cotton gum,” is thought to come from the cottony feeling one gets in one’s mouth after eating the bitter fruits. Description This native deciduous tree is found in the bottomlands, floodplains, and swamps of southern Virginia, south to northwest Florida, west to southeastern Texas, and north Figure 1. Leaves and fruit of Nyssa aquatica. through the Mississippi River Valley. Mature trees grow Credits: SJQuinney, CC BY-NC-SA 2.0 best in full sunlight and can reach heights of approximately 100 feet. -
De Novo Genome Assembly of Camptotheca Acuminata, a Natural Source of the Anti-Cancer Compound Camptothecin Dongyan Zhao1, John
Manuscript Click here to download Manuscript Camptotheca_Ms_v15_GigaSci.docx 1 2 3 4 1 De novo genome assembly of Camptotheca acuminata, a natural source of the anti-cancer 5 6 7 2 compound camptothecin 8 9 10 3 Dongyan Zhao1, John P. Hamilton1, Gina M. Pham1, Emily Crisovan1, Krystle Wiegert-Rininger1, 11 12 13 4 Brieanne Vaillancourt1, Dean DellaPenna2, and C. Robin Buell1* 14 15 16 5 1Department of Plant Biology, Michigan State University, East Lansing, MI 48824 USA 17 18 19 20 6 2Department of Biochemistry & Molecular Biology, Michigan State University, East Lansing, MI 21 22 23 7 48824 USA 24 25 26 8 Email addresses: Dongyan Zhao <[email protected]>, John P. Hamilton <[email protected]>, 27 28 29 9 Gina M. Pham <[email protected]>, Emily Crisovan <[email protected]>, Krystle Wiegert- 30 31 10 Rininger <[email protected]>, Brieanne Vaillancourt <[email protected]>, Dean Dellapenna 32 33 34 11 <[email protected]>, C Robin Buell <[email protected]> 35 36 37 12 *Correspondence should be addressed to: C. Robin Buell, [email protected] 38 39 40 41 13 42 43 44 14 Manuscript type: Data note 45 46 47 48 15 49 50 51 16 Note: Reviewers can access the genome sequence and annotation using the following 52 53 54 17 temporary URL: http://datadryad.org/review?doi=doi:10.5061/dryad.nc8qr. 55 56 57 58 59 60 61 62 63 1 64 65 1 2 3 4 18 Abstract 5 6 7 8 19 Background: Camptotheca acuminata is one of a limited number of species that produce 9 10 20 camptothecin, a pentacyclic quinoline alkaloid with anti-cancer activity due to its ability to 11 12 13 21 inhibit DNA topoisomerase. -
Plant Palette - Trees 50’-0”
50’-0” 40’-0” 30’-0” 20’-0” 10’-0” Zelkova Serrata “Greenvase” Metasequoia glyptostroboides Cladrastis kentukea Chamaecyparis obtusa ‘Gracilis’ Ulmus parvifolia “Emer I” Green Vase Zelkova Dawn Redwood American Yellowwood Slender Hinoki Falsecypress Athena Classic Elm • Vase shape with upright arching branches • Narrow, conical shape • Horizontally layered, spreading form • Narrow conical shape • Broadly rounded, pendulous branches • Green foliage • Medium green, deciduous conifer foliage • Dark green foliage • Evergreen, light green foliage • Medium green, toothed leaves • Orange Fall foliage • Rusty orange Fall foliage • Orange to red Fall foliage • Evergreen, no Fall foliage change • Yellowish fall foliage Plant Palette - Trees 50’-0” 40’-0” 30’-0” 20’-0” 10’-0” Quercus coccinea Acer freemanii Cercidiphyllum japonicum Taxodium distichum Thuja plicata Scarlet Oak Autumn Blaze Maple Katsura Tree Bald Cyprus Western Red Cedar • Pyramidal, horizontal branches • Upright, broad oval shape • Pyramidal shape • Pyramidal shape, develops large flares at base • Pyramidal, buttressed base with lower branches • Long glossy green leaves • Medium green fall foliage • Bluish-green, heart-shaped foliage • Leaves are needle-like, green • Leaves green and scale-like • Scarlet red Fall foliage • Brilliant orange-red, long lasting Fall foliage • Soft apricot Fall foliage • Rich brown Fall foliage • Sharp-pointed cone scales Plant Palette - Trees 50’-0” 40’-0” 30’-0” 20’-0” 10’-0” Thuja plicata “Fastigiata” Sequoia sempervirens Davidia involucrata Hogan -
Systematics, Climate, and Ecology of Fossil and Extant Nyssa (Nyssaceae, Cornales) and Implications of Nyssa Grayensis Sp
East Tennessee State University Digital Commons @ East Tennessee State University Electronic Theses and Dissertations Student Works 8-2013 Systematics, Climate, and Ecology of Fossil and Extant Nyssa (Nyssaceae, Cornales) and Implications of Nyssa grayensis sp. nov. from the Gray Fossil Site, Northeast Tennessee Nathan R. Noll East Tennessee State University Follow this and additional works at: https://dc.etsu.edu/etd Part of the Biodiversity Commons, Climate Commons, Paleontology Commons, and the Plant Biology Commons Recommended Citation Noll, Nathan R., "Systematics, Climate, and Ecology of Fossil and Extant Nyssa (Nyssaceae, Cornales) and Implications of Nyssa grayensis sp. nov. from the Gray Fossil Site, Northeast Tennessee" (2013). Electronic Theses and Dissertations. Paper 1204. https://dc.etsu.edu/etd/1204 This Thesis - Open Access is brought to you for free and open access by the Student Works at Digital Commons @ East Tennessee State University. It has been accepted for inclusion in Electronic Theses and Dissertations by an authorized administrator of Digital Commons @ East Tennessee State University. For more information, please contact [email protected]. Systematics, Climate, and Ecology of Fossil and Extant Nyssa (Nyssaceae, Cornales) and Implications of Nyssa grayensis sp. nov. from the Gray Fossil Site, Northeast Tennessee ___________________________ A thesis presented to the faculty of the Department of Biological Sciences East Tennessee State University In partial fulfillment of the requirements for the degree Master of Science in Biology ___________________________ by Nathan R. Noll August 2013 ___________________________ Dr. Yu-Sheng (Christopher) Liu, Chair Dr. Tim McDowell Dr. Foster Levy Keywords: Nyssa, Endocarp, Gray Fossil Site, Miocene, Pliocene, Karst ABSTRACT Systematics, Climate, and Ecology of Fossil and Extant Nyssa (Nyssaceae, Cornales) and Implications of Nyssa grayensis sp. -
Nyssaceae – Sour Gum Family
NYSSACEAE – SOUR GUM FAMILY Plant: shrubs or mostly trees Stem: Root: Leaves: simple, alternate; no stipules Flowers: perfect, some imperfect; 5 sepals (often reduced) or none; 5 petals (sometimes more or none); 5-10, rarely 12 stamens in 2 series; ovary inferior, 6-10 carpels Fruit: drupe or stone (1-6 seeds) Other: often included in the Cornaceae (Dogwood Family); Dicotyledons Group Genera: Nyssa (sour gum) – some workers put these in the Cornaceae family. WARNING – family descriptions are only a layman’s guide and should not be used as definitive NYSSACEAE – SOUR GUM FAMILY Water Tupelo or Tupelo Gum; Nyssa aquatic L. Black Gum [Sour Gum]; Nyssa sylvatica Marsh. Water Tupelo or Tupelo Gum USDA Nyssa aquatic L. Nyssaceae (Sour Gum Family) USDA Otter Slough area, Stoddard County, Missouri Notes: tree; dioecious; staminate flowers in clusters and pistillate flower solitary, 5 petals; leaves fairly large, alternate, simple, mostly ovate and entire or with 1 to few coarse teeth, short tip but fairly sharp, shiny dark green above, paler and finely hairy below; bark thin and grooved, base is quite swollen; twigs chambered with white pith; fruit a blue-black berry (green early) with white spots at maturity; spring to early summer [V Max Brown, 2017] Black-Gum [Sour Gum] USDA Nyssa sylvatica Marsh. Nyssaceae (Sour Gum Family) Oak Openings Metropark, Lucas County, Ohio Notes: tree; flowers greenish (dioecious); leaves alternate, mostly entire but a few teeth may be present, short tip but fairly sharp, shiny dark green above, paler and mostly smooth below; bark checkered, often deeply, in swamps base is swollen; twigs chambered with white pith, bends without breaking; buds brown with several scales; fruit a blue-black berry (1-3 on pedicel); spring to early summer [V Max Brown, 2005]. -
Nyssa Sylvatica Blackgum1 Edward F
Fact Sheet ST-422 October 1994 Nyssa sylvatica Blackgum1 Edward F. Gilman and Dennis G. Watson2 INTRODUCTION Sourgum is a hardwood tree which grows to 75 feet tall, has a medium growth rate, pyramidal shape with horizontal branches growing from a typically straight trunk (Fig. 1). But the shape of the crown varies from tree to tree and, unfortunately, this is looked upon by some architects as undesirable. As the tree grows to 10 and 15-years-old, crown form becomes more uniform among trees. Lower branches droop with age and will need to be removed if used as a street tree. Growth habit is similar to pin oak, a tree which many people are familiar with. Providing a brilliant display of red to deep purple foliage in the fall, Sourgum surprises most people since it does not particularly stand out in the landscape until then. The small, blue fruits may be considered a litter nuisance in urban/suburban plantings but are quite popular with many birds and mammals, and they wash away quickly. GENERAL INFORMATION Scientific name: Nyssa sylvatica Pronunciation: NISS-uh sill-VAT-ih-kuh Figure 1. Young Blackgum. Common name(s): Blackgum, Sourgum, Black Tupelo for median strip plantings in the highway; reclamation Family: Nyssaceae plant; shade tree; specimen; sidewalk cutout (tree pit); USDA hardiness zones: 4B through 9 (Fig. 2) residential street tree; no proven urban tolerance Origin: native to North America Availability: somewhat available, may have to go out Uses: large parking lot islands (> 200 square feet in of the region to find the tree size); wide tree lawns (>6 feet wide); medium-sized parking lot islands (100-200 square feet in size); medium-sized tree lawns (4-6 feet wide); recommended for buffer strips around parking lots or 1. -
Nyssa Sinensis
A Study in Scarlet: Nyssa sinensis Nancy Rose y favorite “old reliables” for fall color borne in axillary clusters and male flowers at the Arboretum include the pure are produced along older branches. The small Mgold foliage of sweet birch (Betula greenish flowers are inconspicuous but they are lenta), the fiery red-orange-yellow display of extremely attractive to honeybees (N. ogeche, Korean maple (Acer pseudosieboldianum), and which has a limited native range primarily in the glossy burgundy leaves of Euonymus carno- southern Georgia and northern Florida, is the sus. That’s just a start, though, and one of the source for prized tupelo honey). The fruit of delights of wandering the Arboretum repeatedly Chinese tupelo is a dark blue oblong drupe that in autumn is discovering new spots of color. is readily eaten by birds. A few years ago, on a gray mid-November day Taxonomy references place Nyssa either in when many trees were already bare, I was drawn Cornaceae (the dogwood family) or in its own to a cluster of brilliant scarlet and orange leaves family, Nyssaceae. The genus name Nyssa remaining on a tree branch. The tree, it turned comes from Greek mythology and refers to a out, was Chinese tupelo, Nyssa sinensis. water (or rain) nymph named Nyssa (or Nysa), This was a new species to me, but I certainly one of the nymphs who cared for Dionysus, knew another species in the genus, Nyssa syl- god of wine, as a child (the location where the vatica, known by the common names sour gum, water nymphs sheltered Dionysus and where black gum, tupelo, black tupelo, pepperidge, or, he invented wine is known as Mount Nyssa). -
Vegetation Community Monitoring at Congaree National Park: 2014 Data Summary
National Park Service U.S. Department of the Interior Natural Resource Stewardship and Science Vegetation Community Monitoring at Congaree National Park 2014 Data Summary Natural Resource Data Series NPS/SECN/NRDS—2016/1016 ON THIS PAGE Tiny, bright yellow blossoms of Hypoxis hirsuta grace the forest floor at Congaree National Park. Photograph courtesy of Sarah C. Heath, Southeast Coast Network. ON THE COVER Spiraling compound leaf of green dragon (Arisaema dracontium) at Congaree National Park. Photograph courtesy of Sarah C. Heath, Southeast Coast Network Vegetation Community Monitoring at Congaree National Park 2014 Data Summary Natural Resource Data Series NPS/SECN/NRDS—2016/1016 Sarah Corbett Heath1 and Michael W. Byrne2 1National Park Service Southeast Coast Inventory and Monitoring Network Cumberland Island National Seashore 101 Wheeler Street Saint Marys, GA 31558 2National Park Service Southeast Coast Inventory and Monitoring Network 135 Phoenix Drive Athens, GA 30605 May 2016 U.S. Department of the Interior National Park Service Natural Resource Stewardship and Science Fort Collins, Colorado The National Park Service, Natural Resource Stewardship and Science office in Fort Collins, Colorado, publishes a range of reports that address natural resource topics. These reports are of interest and applicability to a broad audience in the National Park Service and others in natural resource management, including scientists, conservation and environmental constituencies, and the public. The Natural Resource Data Series is intended for the timely release of basic data sets and data summaries. Care has been taken to assure accuracy of raw data values, but a thorough analysis and interpretation of the data has not been completed. -
Black Gum and Tupelo FNR-298-W Daniel L
PURDUE EXTENSION Hardwood Lumber and Veneer Series Black Gum and Tupelo FNR-298-W Daniel L. Cassens, Professor and Extension Wood Products Specialist Department of Forestry and Natural Resources, Purdue University, West Lafayette, IN 47907 Black gum, or black tupelo (Nyssa sylvatica Marsh.), a variety called swamp tupelo, or swamp black gum (Nyssa sylvatica var biflora (Walt.) Song., and water tupelo (Nyssa aquatica L.) are a group of closely related and confusing species and varieties. They are usually thought of as southern species because most grade lumber is produced in the south. Black gum is a medium-sized, wide ranging tree that makes its best development on moist alluvial soils, but it also grows on dry upland sites. It can be associated with numerous hardwood and softwood species. Swamp black gum grows in southern swamps and is probably the source of most black gum lumber produced. Water tupelo (Nyssa aquatica L.) is a large tree with a buttressed base and grows in deep water swamps with cypress. The buttressed portion of the tree develops very light-weight wood. The largest reported water tupelo is nearly 9 feet in diameter at 4½ feet above the ground. Black gum ranges from southern Maine to nearly the tip of Florida to east Texas and north across southern Illinois, nearly all of Indiana to central Michigan and back east, except in the lower Mississippi River bottom. The largest reported black gum is a little over 6.1 feet in diameter at 4½ feet above the ground. By comparison, swamp black gum Dan Cassens Black gum tree has a much more restricted range. -
Southwestern Oregon Tree Selection Guide for Coos, Curry, Douglas, Jackson, and Josephinedate
EC 1505 • January 1999 $5.50 Southwestern Oregon Tree Selection Guide for Coos, Curry, Douglas, Jackson, and JosephineDATE. counties OF OUT IS information: PUBLICATIONcurrent most THIS For http://extension.oregonstate.edu/catalog OReGON STATE UNIVERSITY EXTENSION SERVICE Contents How to use this guide 1 Trees in the home landscape 2 Tree selection—the right tree in the right place 2 Buying trees 3 For more information 4 Part I: Tree lists Trees for sites with partial sun DATE. 7 Trees with moderate drought tolerance 10 Trees with good drought tolerance OF 14 Short trees (up to 35' mature height) 17 Trees with narrow spread (up to 30') 20 Trees for spring flowers OUT 25 Trees for summer flowers 27 Trees for fall color IS 28 Trees that create shade 32 Deer-resistant trees 34 Trees that attract wildlife 36 Trees resistant to armillaria root rot 37 Trees resistant to verticillium wilt information: 38 Part II: Tree descriptions Evergreen and deciduous broadleaf trees 41 Conifer trees current 63 Hardy palmsPUBLICATION 68 most THIS For http://extension.oregonstate.edu/catalog Written by Jerry Maul, Extension horticulture agent, Douglas County, Oregon State University. Illustrations courtesy of Gary Whitley and Pacific Power; Laura Lynn, Oregon Department of Forestry; and Edward Jensen, Manual of Oregon Trees and Shrubs (Oregon State University, revised 1990). Southwestern Oregon Tree Selection Guide for Coos, Curry, Douglas, Jackson, and Josephine counties Selecting the right tree for the right place is the most important decision to How to use this guideDATE. make in the planting process. If you Most people select trees for a particular choose your tree wisely, you'll enjoy it for many purpose or function, such as flowers, fruit, years. -
Nyssa Aquatica L. Water Tupelo
Nyssa aquatica L. Water Tupelo Cornaceae Dogwood family R. L. Johnson Water tupelo (Nyssa aquatica), also called cotton- base that tapers to a long, clear bole and often occurs gum, sourgum, swamp tupelo, tupelo-gum, and in pure stands. A good mature tree will produce com- water-gum, is a large, long-lived tree that grows in mercial timber used for furniture and crates. Many southern swamps and flood plains where its root kinds of wildlife eat the fruits and it is a favored system is periodically under water. It has a swollen honey tree. Figure l-The native range of water tupelo. The author is Principal Silviculturist (retired), Southern Forest Experiment Station, New Orleans, LA. 474 Nyssa aquatica Southeast, such as the Roanoke and Santee, and in the large swamps of southwestern Louisiana and southeastern Texas. On some sites water may reach a depth of 6 m (20 ft) during rainy seasons and may remain as high as 4 m (13 R) for long periods (21). Surface water may disappear from water tupelo areas in midsummer or fall, but on better sites soil moisture remains at or near saturation level throughout most of the growing season. Soils that commonly support water tupelo range from mucks and clays to silts and sands and are in the orders Alfisols, Entisols, Histosols, and Incep- tisols. Most are moderately to strongly acidic; subsoil frequently is rather pervious. Site index of water tupelo for several Midsouth soils ranges from 21 to 27 m (70 to 90 ft) at 50 years (4). Associated Forest Cover Figure !2-Water tupelo in Attala County, MS. -
A Chromosome-Level Genome Assembly of the Chinese Tupelo Nyssa Sinensis
www.nature.com/scientificdata OPEN A chromosome-level genome DATA DESCRIPTOR assembly of the Chinese tupelo Nyssa sinensis Xuchen Yang1,3, Minghui Kang1,3, Yanting Yang1,3, Haifeng Xiong1, Mingcheng Wang1, Zhiyang Zhang1, Zefu Wang1, Haolin Wu1, Tao Ma1, Jianquan Liu1,2 & Zhenxiang Xi 1* The deciduous Chinese tupelo (Nyssa sinensis Oliv.) is a popular ornamental tree for the spectacular autumn leaf color. Here, using single-molecule sequencing and chromosome conformation capture data, we report a high-quality, chromosome-level genome assembly of N. sinensis. PacBio long reads were de novo assembled into 647 polished contigs with a total length of 1,001.42 megabases (Mb) and an N50 size of 3.62 Mb, which is in line with genome sizes estimated using fow cytometry and the k- mer analysis. These contigs were further clustered and ordered into 22 pseudo-chromosomes based on Hi-C data, matching the chromosome counts in Nyssa obtained from previous cytological studies. In addition, a total of 664.91 Mb of repetitive elements were identifed and a total of 37,884 protein- coding genes were predicted in the genome of N. sinensis. All data were deposited in publicly available repositories, and should be a valuable resource for genomics, evolution, and conservation biology. Background & Summary Nyssa sinensis Oliv., commonly known as Chinese tupelo, is a deciduous tree with ovate leaves, which turn bril- liant red, orange, and yellow in autumn. It belongs to the family Nyssaceae within the order Cornales, and is native to southern China and Vietnam. Te genus Nyssa comprises three species in North America (i.e., N.