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Characterization of Two Undescribed Mucoralean Species with Specific
Preprints (www.preprints.org) | NOT PEER-REVIEWED | Posted: 26 March 2018 doi:10.20944/preprints201803.0204.v1 1 Article 2 Characterization of Two Undescribed Mucoralean 3 Species with Specific Habitats in Korea 4 Seo Hee Lee, Thuong T. T. Nguyen and Hyang Burm Lee* 5 Division of Food Technology, Biotechnology and Agrochemistry, College of Agriculture and Life Sciences, 6 Chonnam National University, Gwangju 61186, Korea; [email protected] (S.H.L.); 7 [email protected] (T.T.T.N.) 8 * Correspondence: [email protected]; Tel.: +82-(0)62-530-2136 9 10 Abstract: The order Mucorales, the largest in number of species within the Mucoromycotina, 11 comprises typically fast-growing saprotrophic fungi. During a study of the fungal diversity of 12 undiscovered taxa in Korea, two mucoralean strains, CNUFC-GWD3-9 and CNUFC-EGF1-4, were 13 isolated from specific habitats including freshwater and fecal samples, respectively, in Korea. The 14 strains were analyzed both for morphology and phylogeny based on the internal transcribed 15 spacer (ITS) and large subunit (LSU) of 28S ribosomal DNA regions. On the basis of their 16 morphological characteristics and sequence analyses, isolates CNUFC-GWD3-9 and CNUFC- 17 EGF1-4 were confirmed to be Gilbertella persicaria and Pilobolus crystallinus, respectively.To the 18 best of our knowledge, there are no published literature records of these two genera in Korea. 19 Keywords: Gilbertella persicaria; Pilobolus crystallinus; mucoralean fungi; phylogeny; morphology; 20 undiscovered taxa 21 22 1. Introduction 23 Previously, taxa of the former phylum Zygomycota were distributed among the phylum 24 Glomeromycota and four subphyla incertae sedis, including Mucoromycotina, Kickxellomycotina, 25 Zoopagomycotina, and Entomophthoromycotina [1]. -
Molecular Phylogenetic and Scanning Electron Microscopical Analyses
Acta Biologica Hungarica 59 (3), pp. 365–383 (2008) DOI: 10.1556/ABiol.59.2008.3.10 MOLECULAR PHYLOGENETIC AND SCANNING ELECTRON MICROSCOPICAL ANALYSES PLACES THE CHOANEPHORACEAE AND THE GILBERTELLACEAE IN A MONOPHYLETIC GROUP WITHIN THE MUCORALES (ZYGOMYCETES, FUNGI) KERSTIN VOIGT1* and L. OLSSON2 1 Institut für Mikrobiologie, Pilz-Referenz-Zentrum, Friedrich-Schiller-Universität Jena, Neugasse 24, D-07743 Jena, Germany 2 Institut für Spezielle Zoologie und Evolutionsbiologie, Friedrich-Schiller-Universität Jena, Erbertstr. 1, D-07743 Jena, Germany (Received: May 4, 2007; accepted: June 11, 2007) A multi-gene genealogy based on maximum parsimony and distance analyses of the exonic genes for actin (act) and translation elongation factor 1 alpha (tef ), the nuclear genes for the small (18S) and large (28S) subunit ribosomal RNA (comprising 807, 1092, 1863, 389 characters, respectively) of all 50 gen- era of the Mucorales (Zygomycetes) suggests that the Choanephoraceae is a monophyletic group. The monotypic Gilbertellaceae appears in close phylogenetic relatedness to the Choanephoraceae. The mono- phyly of the Choanephoraceae has moderate to strong support (bootstrap proportions 67% and 96% in distance and maximum parsimony analyses, respectively), whereas the monophyly of the Choanephoraceae-Gilbertellaceae clade is supported by high bootstrap values (100% and 98%). This suggests that the two families can be joined into one family, which leads to the elimination of the Gilbertellaceae as a separate family. In order to test this hypothesis single-locus neighbor-joining analy- ses were performed on nuclear genes of the 18S, 5.8S, 28S and internal transcribed spacer (ITS) 1 ribo- somal RNA and the translation elongation factor 1 alpha (tef ) and beta tubulin (βtub) nucleotide sequences. -
Examining New Phylogenetic Markers to Uncover The
Persoonia 30, 2013: 106–125 www.ingentaconnect.com/content/nhn/pimj RESEARCH ARTICLE http://dx.doi.org/10.3767/003158513X666394 Examining new phylogenetic markers to uncover the evolutionary history of early-diverging fungi: comparing MCM7, TSR1 and rRNA genes for single- and multi-gene analyses of the Kickxellomycotina E.D. Tretter1, E.M. Johnson1, Y. Wang1, P. Kandel1, M.M. White1 Key words Abstract The recently recognised protein-coding genes MCM7 and TSR1 have shown significant promise for phylo genetic resolution within the Ascomycota and Basidiomycota, but have remained unexamined within other DNA replication licensing factor fungal groups (except for Mucorales). We designed and tested primers to amplify these genes across early-diverging Harpellales fungal clades, with emphasis on the Kickxellomycotina, zygomycetous fungi with characteristic flared septal walls Kickxellomycotina forming pores with lenticular plugs. Phylogenetic tree resolution and congruence with MCM7 and TSR1 were com- MCM7 pared against those inferred with nuclear small (SSU) and large subunit (LSU) rRNA genes. We also combined MS277 MCM7 and TSR1 data with the rDNA data to create 3- and 4-gene trees of the Kickxellomycotina that help to resolve MS456 evolutionary relationships among and within the core clades of this subphylum. Phylogenetic inference suggests ribosomal biogenesis protein that Barbatospora, Orphella, Ramicandelaber and Spiromyces may represent unique lineages. It is suggested that Trichomycetes these markers may be more broadly useful for phylogenetic studies among other groups of early-diverging fungi. TSR1 Zygomycota Article info Received: 27 June 2012; Accepted: 2 January 2013; Published: 20 March 2013. INTRODUCTION of Blastocladiomycota and Kickxellomycotina, as well as four species of Mucoromycotina have their genomes available The molecular revolution has transformed our understanding of (based on available online searches and the list at http://www. -
Color Plates
Color Plates Plate 1 (a) Lethal Yellowing on Coconut Palm caused by a Phytoplasma Pathogen. (b, c) Tulip Break on Tulip caused by Lily Latent Mosaic Virus. (d, e) Ringspot on Vanda Orchid caused by Vanda Ringspot Virus R.K. Horst, Westcott’s Plant Disease Handbook, DOI 10.1007/978-94-007-2141-8, 701 # Springer Science+Business Media Dordrecht 2013 702 Color Plates Plate 2 (a, b) Rust on Rose caused by Phragmidium mucronatum.(c) Cedar-Apple Rust on Apple caused by Gymnosporangium juniperi-virginianae Color Plates 703 Plate 3 (a) Cedar-Apple Rust on Cedar caused by Gymnosporangium juniperi.(b) Stunt on Chrysanthemum caused by Chrysanthemum Stunt Viroid. Var. Dark Pink Orchid Queen 704 Color Plates Plate 4 (a) Green Flowers on Chrysanthemum caused by Aster Yellows Phytoplasma. (b) Phyllody on Hydrangea caused by a Phytoplasma Pathogen Color Plates 705 Plate 5 (a, b) Mosaic on Rose caused by Prunus Necrotic Ringspot Virus. (c) Foliar Symptoms on Chrysanthemum (Variety Bonnie Jean) caused by (clockwise from upper left) Chrysanthemum Chlorotic Mottle Viroid, Healthy Leaf, Potato Spindle Tuber Viroid, Chrysanthemum Stunt Viroid, and Potato Spindle Tuber Viroid (Mild Strain) 706 Color Plates Plate 6 (a) Bacterial Leaf Rot on Dieffenbachia caused by Erwinia chrysanthemi.(b) Bacterial Leaf Rot on Philodendron caused by Erwinia chrysanthemi Color Plates 707 Plate 7 (a) Common Leafspot on Boston Ivy caused by Guignardia bidwellii.(b) Crown Gall on Chrysanthemum caused by Agrobacterium tumefaciens 708 Color Plates Plate 8 (a) Ringspot on Tomato Fruit caused by Cucumber Mosaic Virus. (b, c) Powdery Mildew on Rose caused by Podosphaera pannosa Color Plates 709 Plate 9 (a) Late Blight on Potato caused by Phytophthora infestans.(b) Powdery Mildew on Begonia caused by Erysiphe cichoracearum.(c) Mosaic on Squash caused by Cucumber Mosaic Virus 710 Color Plates Plate 10 (a) Dollar Spot on Turf caused by Sclerotinia homeocarpa.(b) Copper Injury on Rose caused by sprays containing Copper. -
Field Manual of Diseases on Garden and Greenhouse Flowers Field Manual of Diseases on Garden and Greenhouse Flowers
R. Kenneth Horst Field Manual of Diseases on Garden and Greenhouse Flowers Field Manual of Diseases on Garden and Greenhouse Flowers R. Kenneth Horst Field Manual of Diseases on Garden and Greenhouse Flowers R. Kenneth Horst Plant Pathology and Plant Microbe Biology Cornell University Ithaca, NY , USA ISBN 978-94-007-6048-6 ISBN 978-94-007-6049-3 (eBook) DOI 10.1007/978-94-007-6049-3 Springer Dordrecht Heidelberg New York London Library of Congress Control Number: 2013935122 © Springer Science+Business Media Dordrecht 2013 This work is subject to copyright. All rights are reserved by the Publisher, whether the whole or part of the material is concerned, speci fi cally the rights of translation, reprinting, reuse of illustrations, recitation, broadcasting, reproduction on micro fi lms or in any other physical way, and transmission or information storage and retrieval, electronic adaptation, computer software, or by similar or dissimilar methodology now known or hereafter developed. Exempted from this legal reservation are brief excerpts in connection with reviews or scholarly analysis or material supplied speci fi cally for the purpose of being entered and executed on a computer system, for exclusive use by the purchaser of the work. Duplication of this publication or parts thereof is permitted only under the provisions of the Copyright Law of the Publisher’s location, in its current version, and permission for use must always be obtained from Springer. Permissions for use may be obtained through RightsLink at the Copyright Clearance Center. Violations are liable to prosecution under the respective Copyright Law. The use of general descriptive names, registered names, trademarks, service marks, etc. -
ZYGOMYCOTA CITADOS PARA CHILE (Zygomycota Cited in Chile)
Boletín Micológico Vol. 18 : 67 - 74 2003 ZYGOMYCOTA CITADOS PARA CHILE (Zygomycota cited in Chile) Oscar Martínez V. & Eduardo Valenzuela F. Instituto de Microbiología, Facultad de Ciencias, Universidad Austral de Chile. Casilla 167, Valdivia, Chile. Palabras claves: Taxonomía. Zygomycota, Glomeromycota, Chile. Key word: Taxonomy, Zygomycota, Glomeromycota, Chile. RESUMEN ABSTRACT Se hizo un estudio bibliográfico sobre taxa A bibliographical study about taxa belonging to pertenecientes a las Divisiones Zygomycota y Glome- the Zygomycota and Glomeromycota Division was carried romycota, elaborandose un listado actualizado de los out. Based on the gathered information, an updated list of hongos pertenecientes a estos taxa citados para Chile, fungi included in the above taxonomic groups and cited in principalmente en revistas chilenas, hasta el año 2002. Los Chile mainly in chilean issues until 2002 was prepared. taxa fueron agrupadas de acuerdo a la taxonomía moder- Taxa were grouped according to the modern taxonomy na citada por Kirk et al.,(2001). Para Chile actualmente referred to by Kirk et al. (2001). As a result, there are in se citarían 3 taxa pertenecientes a los Glomeromycota, Chile 3 taxa belonging to the Glomeromycota, 87 belong- 87 a los Zygomycota, de los cuales 81 pertenecen a los ing to the Zygomycota, 81 to the Zygomycetes, and 6 to Zygomycetes y 6 a los Trycomycetes. the Trycomycetes . INTRODUCCION El objetivo de este trabajo es proporcionar una lista actualizada de los taxa pertenecientes a las Divisiones De acuerdo a Kirk et al. (2001), los hongos Zygo y Glomeromycota citadas (en revistas preferen-te- per-tenecientes a la División Zygomycota han sido mente nacionales) para Chile hasta el año 2002. -
University of Florida Thesis Or Dissertation
PHYLOGENETIC SYSTEMATICS OF SYNCEPHALIS (ZOOPAGALES: ZOOPAGOMYCOTA), A GENUS OF UBIQUITOUS MYCOPARASITES By KATHERINE LOUISE LAZARUS A THESIS PRESENTED TO THE GRADUATE SCHOOL OF THE UNIVERSITY OF FLORIDA IN PARTIAL FULFILLMENT OF THE REQUIREMENTS FOR THE DEGREE OF MASTER OF SCIENCE UNIVERSITY OF FLORIDA 2016 © 2016 Katherine Louise Lazarus ACKNOWLEDGMENTS I would like to acknowledge substrate sample, culture, and sequence contributors, Gerald L. Benny, Hsiao-Man Ho, Matthew E. Smith, Kerry O’Donnel and the NRRL (Agriculture Research Service Culture Collection). I would like to thank members of the Smith Lab, Rosanne Healy, Alija Mujic, Nicole Reynolds and Arthur Grupe and I would like to thank my advisor Matthew E. Smith and committee members Jeffrey Rollins and Gerald Benny for their guidance, feedback and support. I would also like to acknowledge IFAS and the University of Florida. 3 TABLE OF CONTENTS page ACKNOWLEDGMENTS .................................................................................................. 3 LIST OF TABLES ............................................................................................................ 5 LIST OF FIGURES .......................................................................................................... 6 ABSTRACT ..................................................................................................................... 7 CHAPTER 1 INTRODUCTION ...................................................................................................... 9 2 MATERIALS AND -
CAROTENOIDS in the FUNGI MUCORALES 5 This Mold the Saturated Polyenes Were Produced Much More Rapidly Than Ij-Carotene
2 8 2 5 I~ Illp·8 2 5 1.0 :~ 11111 . 11111 . 1.0 I~ 1= 11111 . ~ II~-~ 2.2 I~ IIli?~ 2.2 Ui I" ~ I~ I; I~ w J:Z ~ 1,1,g ~ m,t"g 2.0 LiI. '" ... " 1.1 ...... "" 1.1 ...u,~u -- - --- 11111 1.25 1111,1.4 111111.6 111111.25 !lII,1.4 111111.6 MICROCOPY RESOLUTION TEST CHART MICROCOPY RESOLUTION TEST CHART NATIONAL BUREAU OF STANDARDS-J963-A NATIONAL BUREAU OF STANDARDS,1963-A ~AROTENOIDS in the FUNGI e :..~ CJ")coMUCORALES .~, ~ .',:.; , " Special Reference to Choanephoraceae U.S. DEPARTMENT OF AGRICULTURE AGRICULTURAL RESEARCH SERVICE CONTENTS Pllg" INTRODUCTION _________________________________________ _ CAROTENE IN ]\I[UCORALES_____________________ • ___ ••• ____ 2 FUNCTION OF CAROTENE IN SEXUALI'l'Y OF l\l{ucorur,J.JS_______ 7 CAUOTENE IN THE FAMILY CHOANEPHOHACEAE______________ 9 OeeulTcnce and History of the Chonncphora(,Nl(' __ _ _ _ _ _ _I0 Life Cycle_---- ________________________ ., _ _ _ _ _ _ _ _ _ _ _ _ 14 Cnrotene in Chonnephorneelle_________________________ 17 LITEHATURE CITED______________________________________ 23 Cllrotene in l\{ucornil',s______________________ .________ 2:~ Oc('ulTcnce llnd ]~ift· l 'yell'S of C'hoanephomeell(' ___ _ _ _ _ _ _ ao This review wus madc ns pIU'L of the irl\resLiglltions bl'ing eonducted at the Northern Hegionnl ]{csellJ'eh Laboratory on indust.rial uliliZtl tion of CCI'CIlI gmins. The ARS Oultmc Collection, mnintlline(\ there, is one of thc world's IUl'gest and most ('omplctc ('ollections of industrially important, uILCtcl'in" molds, Ildinornyectes, n,nd yCilStS. The Collection serves as n, sourcc of ItlIt,hcntic miCl'o-oJ'gnlli~ms for the fermentative production of orgillli<.~ neids, vitnmins, Illltibiotics, enzymes, feeds, bcvemgcs, Ilm\ foods. -
High-Level Classification of the Fungi and a Tool for Evolutionary Ecological Analyses
Fungal Diversity (2018) 90:135–159 https://doi.org/10.1007/s13225-018-0401-0 (0123456789().,-volV)(0123456789().,-volV) High-level classification of the Fungi and a tool for evolutionary ecological analyses 1,2,3 4 1,2 3,5 Leho Tedersoo • Santiago Sa´nchez-Ramı´rez • Urmas Ko˜ ljalg • Mohammad Bahram • 6 6,7 8 5 1 Markus Do¨ ring • Dmitry Schigel • Tom May • Martin Ryberg • Kessy Abarenkov Received: 22 February 2018 / Accepted: 1 May 2018 / Published online: 16 May 2018 Ó The Author(s) 2018 Abstract High-throughput sequencing studies generate vast amounts of taxonomic data. Evolutionary ecological hypotheses of the recovered taxa and Species Hypotheses are difficult to test due to problems with alignments and the lack of a phylogenetic backbone. We propose an updated phylum- and class-level fungal classification accounting for monophyly and divergence time so that the main taxonomic ranks are more informative. Based on phylogenies and divergence time estimates, we adopt phylum rank to Aphelidiomycota, Basidiobolomycota, Calcarisporiellomycota, Glomeromycota, Entomoph- thoromycota, Entorrhizomycota, Kickxellomycota, Monoblepharomycota, Mortierellomycota and Olpidiomycota. We accept nine subkingdoms to accommodate these 18 phyla. We consider the kingdom Nucleariae (phyla Nuclearida and Fonticulida) as a sister group to the Fungi. We also introduce a perl script and a newick-formatted classification backbone for assigning Species Hypotheses into a hierarchical taxonomic framework, using this or any other classification system. We provide an example -
The Impacts of Climate Change on Communities of Fungi in Boreal Peatlands
Western University Scholarship@Western Electronic Thesis and Dissertation Repository 12-9-2016 12:00 AM The Impacts of Climate Change on Communities of Fungi in Boreal Peatlands Asma Asemaninejad Hassankiadeh The University of Western Ontario Supervisor Dr. R Greg Thorn The University of Western Ontario Joint Supervisor Dr. Zoë Lindo The University of Western Ontario Graduate Program in Biology A thesis submitted in partial fulfillment of the equirr ements for the degree in Doctor of Philosophy © Asma Asemaninejad Hassankiadeh 2016 Follow this and additional works at: https://ir.lib.uwo.ca/etd Part of the Biodiversity Commons Recommended Citation Asemaninejad Hassankiadeh, Asma, "The Impacts of Climate Change on Communities of Fungi in Boreal Peatlands" (2016). Electronic Thesis and Dissertation Repository. 4273. https://ir.lib.uwo.ca/etd/4273 This Dissertation/Thesis is brought to you for free and open access by Scholarship@Western. It has been accepted for inclusion in Electronic Thesis and Dissertation Repository by an authorized administrator of Scholarship@Western. For more information, please contact [email protected]. Abstract Peatlands have an important role in global climate change through sequestration of atmospheric CO2. However, climate change is already affecting these ecosystems, including both above- and below- ground communities and their functions, such as decomposition. Fungi have a greater biomass than other soil organisms and play a central role in these communities. As a result, there is concern that altered fungal -
Abstracts of the 11Th Arab Congress of Plant Protection
Under the Patronage of His Royal Highness Prince El Hassan Bin Talal, Jordan Arab Journal of Plant Protection Volume 32, Special Issue, November 2014 Abstracts Book 11th Arab Congress of Plant Protection Organized by Arab Society for Plant Protection and Faculty of Agricultural Technology – Al Balqa AppliedUniversity Meridien Amman Hotel, Amman Jordan 13-9 November, 2014 Edited by Hazem S Hasan, Ahmad Katbeh, Mohmmad Al Alawi, Ibrahim Al-Jboory, Barakat Abu Irmaileh, Safa’a Kumari, Khaled Makkouk, Bassam Bayaa Organizing Committee of the 11th Arab Congress of Plant Protection Samih Abubaker Chairman Faculty of Agricultural Technology, Al Balqa AppliedApplied University, Al Salt, Jordan Hazem S. Hasan Secretary Faculty of Agricultural Technology, Al Balqa AppliedUniversity, Al Salt, Jordan Ali Ebed Allah khresat Treasurer General Secretary, Al Balqa AppliedUniversity, Al Salt, Jordan Mazen Ateyyat Member Faculty of Agricultural Technology, Al Balqa AppliedUniversity, Al Salt, Jordan Ahmad Katbeh Member Faculty of Agriculture, University of Jordan, Amman, Jordan Ibrahim Al-Jboory Member Faculty of Agriculture, Bagdad University, Iraq Barakat Abu Irmaileh Member Faculty of Agriculture, University of Jordan, Amman, Jordan Mohmmad Al Alawi Member Faculty of Agricultural Technology, Al Balqa AppliedUniversity, Al Salt, Jordan Mustafa Meqdadi Member Agricultural Materials Company (MIQDADI), Amman Jordan Scientific Committee of the 11th Arab Congress of Plant Protection • Mohmmad Al Alawi, Al Balqa Applied University, Al Salt, Jordan, President -
Effects of the Nematophagous Fungi Arthrobotrys Oligospora Fresen and Trichoderma Harzianum Rifai on Nematodes Infecting Banana, Tomato and Lime Plants
Effects of the Nematophagous Fungi Arthrobotrys oligospora Fresen and Trichoderma harzianum Rifai on Nematodes Infecting Banana, Tomato and Lime Plants Suad Abdel Gamiel Mohamed Ahmed B.Sc. in Crop Protection Faculty of Agricultural Sciences University of Cairo, Egypt (1981) M.Sc. in Crop Protection (Plant Pathology) Faculty of Agricultural Sciences University of Gezira, (1997) A Thesis Submitted to the University of Gezira in Fulfilment of the Requirements for the Award of the Degree of Doctor of Philosophy in Crop Protection (Plant Pathology) Plant Protection Department Faculty of Agricultural Sciences University of Gezira September, 2013 Effects of the Nematophagous Fungi Arthrobotrys oligospora (Fresen) and Trichoderma harzianum (Rifai) on Nematodes Infecting Banana, Tomato and Lime Plants By Suad Abdel Gamiel Mohamed Ahmed Supervision committee: Name Position Signature Prof. El Nour El Amin Abdel Rahman Main Supervisor ………… Prof. Ahmed El Bashir Mohamed El Hassan Co-Supervisor ………… Date: September, 2013 Effects of the Nematophagous Fungi Arthrobotrys oligospora (Fresen) and Trichoderma harzianum (Rifai) on Nematodes Infecting Banana, Tomato and Lime Plants By Suad Abdel Gamiel Mohamed Ahmed Examination Committee: Name Position signature Prof. El Nour El Amin Abdel Rahman Chairman ……………… Prof. Abel Mageed Yassin Abel Mageed External Examinar……………… Dr. Mohamed Hamza Zain Alabdeen Internal Examiner……………… Date of Examination: 29, September, 2013 DEDICATION To my beloved and kind family, my late dear father, my late dear mother, Brothers, sisters, my late dear sister Sharifa and late dear brothers Mohamed and Ahmed. To my kind husband El Badri Yassin ACKNOWLEDGEMENT First of all my thanks to the Almighty ALLAh who gave me strength ,power and patience to complete this study and bring it to its end.