Chem 201/Beauchamp Topic 4, Bare Bones Nomenclature 1
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Brief Guide to the Nomenclature of Organic Chemistry
1 Brief Guide to the Nomenclature of Table 1: Components of the substitutive name Organic Chemistry (4S,5E)-4,6-dichlorohept-5-en-2-one for K.-H. Hellwich (Germany), R. M. Hartshorn (New Zealand), CH3 Cl O A. Yerin (Russia), T. Damhus (Denmark), A. T. Hutton (South 4 2 Africa). E-mail: [email protected] Sponsoring body: Cl 6 CH 5 3 IUPAC Division of Chemical Nomenclature and Structure suffix for principal hept(a) parent (heptane) one Representation. characteristic group en(e) unsaturation ending chloro substituent prefix 1 INTRODUCTION di multiplicative prefix S E stereodescriptors CHEMISTRY The universal adoption of an agreed nomenclature is a key tool for 2 4 5 6 locants ( ) enclosing marks efficient communication in the chemical sciences, in industry and Multiplicative prefixes (Table 2) are used when more than one for regulations associated with import/export or health and safety. fragment of a particular kind is present in a structure. Which kind of REPRESENTATION The International Union of Pure and Applied Chemistry (IUPAC) multiplicative prefix is used depends on the complexity of the provides recommendations on many aspects of nomenclature.1 The APPLIED corresponding fragment – e.g. trichloro, but tris(chloromethyl). basics of organic nomenclature are summarized here, and there are companion documents on the nomenclature of inorganic2 and Table 2: Multiplicative prefixes for simple/complicated entities polymer3 chemistry, with hyperlinks to original documents. An No. Simple Complicated No. Simple Complicated AND overall -
Singlet/Triplet State Anti/Aromaticity of Cyclopentadienylcation: Sensitivity to Substituent Effect
Article Singlet/Triplet State Anti/Aromaticity of CyclopentadienylCation: Sensitivity to Substituent Effect Milovan Stojanovi´c 1, Jovana Aleksi´c 1 and Marija Baranac-Stojanovi´c 2,* 1 Institute of Chemistry, Technology and Metallurgy, Center for Chemistry, University of Belgrade, Njegoševa 12, P.O. Box 173, 11000 Belgrade, Serbia; [email protected] (M.S.); [email protected] (J.A.) 2 Faculty of Chemistry, University of Belgrade, Studentski trg 12-16, P.O. Box 158, 11000 Belgrade, Serbia * Correspondence: [email protected]; Tel.: +381-11-3336741 Abstract: It is well known that singlet state aromaticity is quite insensitive to substituent effects, in the case of monosubstitution. In this work, we use density functional theory (DFT) calculations to examine the sensitivity of triplet state aromaticity to substituent effects. For this purpose, we chose the singlet state antiaromatic cyclopentadienyl cation, antiaromaticity of which reverses to triplet state aromaticity, conforming to Baird’s rule. The extent of (anti)aromaticity was evaluated by using structural (HOMA), magnetic (NICS), energetic (ISE), and electronic (EDDBp) criteria. We find that the extent of triplet state aromaticity of monosubstituted cyclopentadienyl cations is weaker than the singlet state aromaticity of benzene and is, thus, slightly more sensitive to substituent effects. As an addition to the existing literature data, we also discuss substituent effects on singlet state antiaromaticity of cyclopentadienyl cation. Citation: Stojanovi´c,M.; Aleksi´c,J.; Baranac-Stojanovi´c,M. Keywords: antiaromaticity; aromaticity; singlet state; triplet state; cyclopentadienyl cation; substituent Singlet/Triplet State effect Anti/Aromaticity of CyclopentadienylCation: Sensitivity to Substituent Effect. -
Chapter 21 the Chemistry of Carboxylic Acid Derivatives
Instructor Supplemental Solutions to Problems © 2010 Roberts and Company Publishers Chapter 21 The Chemistry of Carboxylic Acid Derivatives Solutions to In-Text Problems 21.1 (b) (d) (e) (h) 21.2 (a) butanenitrile (common: butyronitrile) (c) isopentyl 3-methylbutanoate (common: isoamyl isovalerate) The isoamyl group is the same as an isopentyl or 3-methylbutyl group: (d) N,N-dimethylbenzamide 21.3 The E and Z conformations of N-acetylproline: 21.5 As shown by the data above the problem, a carboxylic acid has a higher boiling point than an ester because it can both donate and accept hydrogen bonds within its liquid state; hydrogen bonding does not occur in the ester. Consequently, pentanoic acid (valeric acid) has a higher boiling point than methyl butanoate. Here are the actual data: INSTRUCTOR SUPPLEMENTAL SOLUTIONS TO PROBLEMS • CHAPTER 21 2 21.7 (a) The carbonyl absorption of the ester occurs at higher frequency, and only the carboxylic acid has the characteristic strong, broad O—H stretching absorption in 2400–3600 cm–1 region. (d) In N-methylpropanamide, the N-methyl group is a doublet at about d 3. N-Ethylacetamide has no doublet resonances. In N-methylpropanamide, the a-protons are a quartet near d 2.5. In N-ethylacetamide, the a- protons are a singlet at d 2. The NMR spectrum of N-methylpropanamide has no singlets. 21.9 (a) The first ester is more basic because its conjugate acid is stabilized not only by resonance interaction with the ester oxygen, but also by resonance interaction with the double bond; that is, the conjugate acid of the first ester has one more important resonance structure than the conjugate acid of the second. -
Metabolic-Hydroxy and Carboxy Functionalization of Alkyl Moieties in Drug Molecules: Prediction of Structure Influence and Pharmacologic Activity
molecules Review Metabolic-Hydroxy and Carboxy Functionalization of Alkyl Moieties in Drug Molecules: Prediction of Structure Influence and Pharmacologic Activity Babiker M. El-Haj 1,* and Samrein B.M. Ahmed 2 1 Department of Pharmaceutical Sciences, College of Pharmacy and Health Sciences, University of Science and Technology of Fujairah, Fufairah 00971, UAE 2 College of Medicine, Sharjah Institute for Medical Research, University of Sharjah, Sharjah 00971, UAE; [email protected] * Correspondence: [email protected] Received: 6 February 2020; Accepted: 7 April 2020; Published: 22 April 2020 Abstract: Alkyl moieties—open chain or cyclic, linear, or branched—are common in drug molecules. The hydrophobicity of alkyl moieties in drug molecules is modified by metabolic hydroxy functionalization via free-radical intermediates to give primary, secondary, or tertiary alcohols depending on the class of the substrate carbon. The hydroxymethyl groups resulting from the functionalization of methyl groups are mostly oxidized further to carboxyl groups to give carboxy metabolites. As observed from the surveyed cases in this review, hydroxy functionalization leads to loss, attenuation, or retention of pharmacologic activity with respect to the parent drug. On the other hand, carboxy functionalization leads to a loss of activity with the exception of only a few cases in which activity is retained. The exceptions are those groups in which the carboxy functionalization occurs at a position distant from a well-defined primary pharmacophore. Some hydroxy metabolites, which are equiactive with their parent drugs, have been developed into ester prodrugs while carboxy metabolites, which are equiactive to their parent drugs, have been developed into drugs as per se. -
Methyl Substitution Effects on the Proton Chemical Shifts in Benzene *
Methyl Substitution Effects on the Proton Chemical Shifts in Benzene * G. S. REDDY E. I. du Pont de Nemours & Company, Inc. Explosives Department, Eastern Laboratory, Gibbstown, New Jersey, U.S.A. (Z. Naturforschg. 21 a, 609—615 [1966] ; received 16 December 1965) Methyl substitution effects on aromatic and methyl proton chemical shifts in several mono-, di-, and trimethyl benzenes are studied. A new method for obtaining the changes in the ring proton chemical shifts from those of methyl proton shifts at the corresponding positions is used. The extra jr-electron densities in toluene are calculated using the already known relation between the jr-elec- tron densities and the proton shifts in aromatic systems. An inverse relationship is obtained between the ionization potentials and the total methyl effects on the chemical shifts in this series of com- pounds as one would expect. Dipole moment of toluene is calculated, and a reasonably good agree- ment is found between the experimentally observed and the calculated dipole moment. Several efforts have been made from time to Considerable work has also been done in estimat- time to study the substitution effects on chemical ing ir-electron densities from chemical shift meas- shifts and coupling constants. One of the earliest urements in unsaturated systems. This study in- attempts in this line are those of CAVANAUGH and volves extension of the substitution effects and also DAILEY 1 who tried to study the effect of multiple estimating jr-electron densities in methyl benzenes. methyl substitution in methane. They encountered Eight mono-, di-, and trimethyl substituted benzenes negative shifts contrary to expectations based on have been studied, and a new technique has been inductive and hyperconjugative effects of the methyl deployed to obtain the methyl substitution effects group which eventually was attributed to the an- on the chemical shifts of ring protons from proton isotropy effect of the added C — C bonds 2-7. -
Implications for Extraterrestrial Hydrocarbon Chemistry: Analysis Of
The Astrophysical Journal, 889:3 (26pp), 2020 January 20 https://doi.org/10.3847/1538-4357/ab616c © 2020. The American Astronomical Society. All rights reserved. Implications for Extraterrestrial Hydrocarbon Chemistry: Analysis of Acetylene (C2H2) and D2-acetylene (C2D2) Ices Exposed to Ionizing Radiation via Ultraviolet–Visible Spectroscopy, Infrared Spectroscopy, and Reflectron Time-of-flight Mass Spectrometry Matthew J. Abplanalp1,2 and Ralf I. Kaiser1,2 1 W. M. Keck Research Laboratory in Astrochemistry, University of Hawaii at Manoa, Honolulu, HI 96822, USA 2 Department of Chemistry, University of Hawaii at Manoa, Honolulu, HI 96822, USA Received 2019 October 4; revised 2019 December 7; accepted 2019 December 10; published 2020 January 20 Abstract The processing of the simple hydrocarbon ice, acetylene (C2H2/C2D2), via energetic electrons, thus simulating the processes in the track of galactic cosmic-ray particles penetrating solid matter, was carried out in an ultrahigh vacuum surface apparatus. The chemical evolution of the ices was monitored online and in situ utilizing Fourier transform infrared spectroscopy (FTIR) and ultraviolet–visible spectroscopy and, during temperature programmed desorption, via a quadrupole mass spectrometer with an electron impact ionization source (EI-QMS) and a reflectron time-of-flight mass spectrometer utilizing single-photon photoionization (SPI-ReTOF-MS) along with resonance-enhanced multiphoton photoionization (REMPI-ReTOF-MS). The confirmation of previous in situ studies of ethylene ice irradiation -
First Principles Prediction of Thermodynamic Properties
2 First Principles Prediction of Thermodynamic Properties Hélio F. Dos Santos and Wagner B. De Almeida NEQC: Núcleo de Estudos em Química Computacional, Departamento de Química, ICE Universidade Federal de Juiz de Fora (UFJF), Campus Universitário Martelos, Juiz de Fora LQC-MM: Laboratório de Química Computacional e Modelagem Molecular Departamento de Química, ICEx, Universidade Federal de Minas Gerais (UFMG) Campus Universitário, Pampulha, Belo Horizonte Brazil 1. Introduction The determination of the molecular structure is undoubtedly an important issue in chemistry. The knowledge of the tridimensional structure allows the understanding and prediction of the chemical-physics properties and the potential applications of the resulting material. Nevertheless, even for a pure substance, the structure and measured properties reflect the behavior of many distinct geometries (conformers) averaged by the Boltzmann distribution. In general, for flexible molecules, several conformers can be found and the analysis of the physical and chemical properties of these isomers is known as conformational analysis (Eliel, 1965). In most of the cases, the conformational processes are associated with small rotational barriers around single bonds, and this fact often leads to mixtures, in which many conformations may exist in equilibrium (Franklin & Feltkamp, 1965). Therefore, the determination of temperature-dependent conformational population is very much welcomed in conformational analysis studies carried out by both experimentalists and theoreticians. -
Text Related to Segment 5.02 ©2002 Claude E. Wintner from the Previous Segment We Have the Value of the Heat of Combustion Of
Text Related to Segment 5.02 ©2002 Claude E. Wintner From the previous segment we have the value of the heat of combustion of an "unstrained" methylene unit as -157.4 kcal/mole. On this basis one would predict that combustion of "unstrained" cyclopropane should liberate 3 X 157.4 = 472.2 kcal/mole; however, when cyclopropane is burned, a value of 499.8 kcal/mole is measured for the actual heat of combustion. The difference of 27.6 kcal/mole is interpreted as representing the higher internal energy ("strain energy") of real cyclopropane as compared to a postulated strain-free "model." ("Model" in this usage speaks of a proposal, or postulate.) These facts are graphed conveniently on an energy diagram as follows: "Strain Energy" represents the error units: kcal/mole not to scale in the "strain-free model" real cyclopropane + 4.5 O2 27.6 "strain-free model" of cyclopropane 499.8 observed heat of combustion + 4.5 O2 472.2 3CO2 + 3H2O heat of combustion predicted for "strain-free model" Note that this estimate of the strain energy in cyclopropane amounts to 9.2 kcal/mole of strain per methylene group (dividing 27.6 by 3, because of the three carbon atoms). Comparable values in kcal/mole for other small and medium rings are given in the following table. As one might expect, in general the strain decreases as the ring is enlarged. units: kcal/mole n Total Strain Strain per CH2 3 27.6 9.2 (CH2)n 4 26.3 6.6 5 6.2 1.2 6 0.1 0.0 ! 7 6.2 0.9 8 9.7 1.2 9 12.6 1.4 10 12.4 1.2 12 4.1 0.3 15 1.9 0.1 Without entering into a discussion of the relevant bonding concepts here, and instead relying on geometry alone, interpretation of the source of the strain energy in cyclopropane and cyclobutane is to some extent self-evident. -
Annex XV Report
Annex XV report PROPOSAL FOR IDENTIFICATION OF A SUBSTANCE OF VERY HIGH CONCERN ON THE BASIS OF THE CRITERIA SET OUT IN REACH ARTICLE 57 Substance Name(s): 1,6,7,8,9,14,15,16,17,17,18,18- Dodecachloropentacyclo[12.2.1.16,9.02,13.05,10]octadeca-7,15-diene (“Dechlorane Plus”TM) [covering any of its individual anti- and syn-isomers or any combination thereof] EC Number(s): 236-948-9; -; - CAS Number(s): 13560-89-9; 135821-74-8; 135821-03-3 Submitted by: United Kingdom Date: 29 August 2017 ANNEX XV – IDENTIFICATION OF DECHLORANE PLUS AS SVHC CONTENTS PROPOSAL FOR IDENTIFICATION OF A SUBSTANCE OF VERY HIGH CONCERN ON THE BASIS OF THE CRITERIA SET OUT IN REACH ARTICLE 57..........................................................................................IV PART I ...............................................................................................................................................1 JUSTIFICATION ..................................................................................................................................1 1. IDENTITY OF THE SUBSTANCE AND PHYSICAL AND CHEMICAL PROPERTIES ...................................2 1.1 Name and other identifiers of the substance................................................................................2 1.2 Composition of the substance ........................................................................................................2 1.3 Identity and composition of degradation products/metabolites relevant for the SVHC assessment ....................................................................................................................................3 -
Nomenclature of Alkanes
Nomenclature of alkanes methane CH4 ethane CH3CH3 propane CH3CH2CH3 butane CH3CH2CH2CH3 pentane CH3CH2CH2CH2CH3 hexane CH3CH2CH2CH2CH2CH3 heptane CH3CH2CH2CH2CH2CH2CH3 octane CH3CH2CH2CH2CH2CH2CH2CH3 nonane CH3CH2CH2CH2CH2CH2CH2CH2CH3 decane CH3CH2CH2CH2CH2CH2CH2CH2CH2CH3 undecane CH3CH2CH2CH2CH2CH2CH2CH2CH2CH2CH3 dodecane CH3CH2CH2CH2CH2CH2CH2CH2CH2CH2CH2CH3 Funky groups/alkanes iso- CH3 R isopropyl HC R CH3 isobutane/isobutyl R = CH3/CH2R (4 C’s) R isopentane/isopentyl R = CH2CH3/CH2CH2R (5 C’s) R isohexane/isohexyl R = CH2CH2CH3/CH2CH2R (6 C’s) R neo- CH3 neopentyl H3C C CH2 R R CH3 neopentane R = H (5 C’s) neohaxane/neohexyl R = CH3/CH2R (6 C’s) R 1° primary (n-) 2° secondary (sec-, s-) 3° tertiary (tert-, t-) H C H C H3C 3 3 CH CH2 CH CH2 CH CH2 H C CH H C CH H3C CH3 3 3 3 3 n- often used with strait chain compounds though it is not actually necessary. sec- sec-butyl H the substituent is attached s-butyl to a 2° C of butane (4 C’s) H3C CH2 C R CH3 no other "sec-" group tert- tert-butyl CH3 a substituent is attached to t-butyl the 3° C of a 4 C H3C C R molecule/unit CH3 tert-pentyl CH3 a substituent is attached to t-pentyl the 3° of a 5 C molecule/unit H3C CH2 C R CH3 no other "tert-" group Form of name #-followed by substituent name followed by parent hydrocarbon name • Determine longest continuous chain. o This is the parent hydrocarbon o If compound has two or more chains of the same length, parent hydrocarbon is chain with greatest number of substituents • Cite the name of substituent before the name of the parent hydrocarbon along with the number of the carbon to which it is attached--Substituents are listed in alphabetical order – neglecting prefixes such as di- tri- tert- etc. -
Toxicological Assessment of Hanford Tank Headspace Chemicals - Determination of Chemicals of Potential Concern
PNNL-14949 Rev. 0 Pacific Northwest National Laboratory Operated by Battelle for the U.S. Department of Energy Toxicological Assessment of Hanford Tank Headspace Chemicals - Determination of Chemicals of Potential Concern I. E. Burgeson N. A. Moore A. L. Bunn J. L. Huckaby December 2004 • Prepared for CH2M HILL Hanford Group, Inc. LEGAL NOTICE This report was prepared by Battelle Memorial Institute (Battelle) as an account of sponsored research activities. Neither Client nor Battelle nor any person acting on behalf of either: MAKES ANY WARRANTY OR REPRESENTATION, EXPRESS OR IMPLIED, with respect to the accuracy, completeness, or usefulness of the information contained in this report, or that the use of any information, apparatus, process, or composition disclosed in this report may not infringe privately owned rights; or Assumes any liabilities with respect to the use of, or for damages resulting from the use of, any information, apparatus, process, or composition disclosed in this report. Reference herein to any specific commercial product, process, or service by trade name, trademark, manufacturer, or otherwise, does not necessarily constitute or imply its endorsement, recommendation, or favoring by Battelle. The views and opinions of authors expressed herein do not necessarily state or reflect those of Battelle. @ This document was printed on recycled paper. (9/97) PNNL-14949 Rev. 0 Toxicological Assessment of Hanford Tank Headspace Chemicals - Determination of Chemicals of Potential Concern I. E. Burgeson N. A. Moore A. L. Bunn J. L. Huckaby December 2004 Prepared for CH2M HILL Hanford Group, Inc. Pacific Northwest Nationa] Laboratory Richland, Washington 99352 Summary A toxicological assessment of chemicals found, or predicted to be present, in Hanford tank headspaces was performed by Pacific Northwest National Laboratory in support of the Industrial Hygiene Chemical Vapor Technical Basis produced by CH2M HILL Hanford Group, Inc. -
(12) STANDARD PATENT (11) Application No. AU 2010224615 B2 (19) AUSTRALIAN PATENT OFFICE
(12) STANDARD PATENT (11) Application No. AU 2010224615 B2 (19) AUSTRALIAN PATENT OFFICE (54) Title Dietary supplement (51) International Patent Classification(s) A23K 1/175 (2006.01) A23K1/18 (2006.01) (21) Application No: 2010224615 (22) Date of Filing: 2010.02.12 (87) WIPONo: WO10/106351 (30) Priority Data (31) Number (32) Date (33) Country 0904584.0 2009.03.17 GB (43) Publication Date: 2010.09.23 (44) Accepted Journal Date: 2014.05.08 (71) Applicant(s) Calinnova Ltd (72) Inventor(s) Green, Malcolm Geoffrey (74) Agent / Attorney Davies Collison Cave, Level 14 255 Elizabeth Street, Sydney, NSW, 2000 (56) Related Art ARNBJERG, J. "Hypokalcaemi hos hest. En kasuistik med diskussion (Hypocalcemia in the horse. A case report)" Nord Vet Med, 1980, Volume 32, Issue 5 Pages 207-211 US 2003/0077254 A1 (RAMAEKERS) 24 April 2003 FR 2625415 A1 (UNICOR UNION COOP AGRICOLES) 07 July 1989 HUDSON, NPH et al., "Primary Hypothyroidism in Two Horses" Australian Veterinary Journal, 1999, Volume 77, Number 8, Pages 504-508 GRUBB, T.L. et al., "Hemodynamic Effects of Calcium Gluconate Administered to Conscious Horses" Journal of Veterinary Internal Medicine, 1996, Volume 10 Number 6 Pages 401-404 US 2008/0014304 A1 (ZELLER et al.) 17 January 2008 ANONYMOUS, "Finish Line Thia-cal" [Retrieved on 23 April 2013] Retrieved from internet <URL: http://www.doversaddlery.eom/finish-line-thia-cal-gallon/p/X1-22069/> published on 30 December 2005 ANONYMOUS, "Humavyte" [Retrieved on 23 April 2013] Retrieved from internet <URL: http://web.archive.org/web/20080719131829/http://www.ranvet.com.au/