microorganisms Article The Purple Sea Urchin Strongylocentrotus purpuratus Demonstrates a Compartmentalization of Gut Bacterial Microbiota, Predictive Functional Attributes, and Taxonomic Co-Occurrence Joseph A. Hakim 1,*, Julie B. Schram 2, Aaron W. E. Galloway 2, Casey D. Morrow 3, Michael R. Crowley 4, Stephen A. Watts 1 and Asim K. Bej 1,* 1 Department of Biology, University of Alabama at Birmingham, 1300 University Blvd., Birmingham, AL 35294, USA;
[email protected] 2 Oregon Institute of Marine Biology, University of Oregon, 63466 Boat Basin Rd, Charleston, OR 97420, USA;
[email protected] (J.B.S.);
[email protected] (A.W.E.G.) 3 Department of Cell, Developmental and Integrative Biology, University of Alabama at Birmingham, 1918 University Blvd., Birmingham, AL 35294, USA;
[email protected] 4 Department of Genetics, Heflin Center Genomics Core, School of Medicine, University of Alabama at Birmingham, 705 South 20th Street, Birmingham, AL 35294, USA;
[email protected] * Correspondence:
[email protected] (J.A.H.);
[email protected] (A.K.B.); Tel.: +1-(205)-934-9857 (A.K.B.) Received: 8 November 2018; Accepted: 21 January 2019; Published: 26 January 2019 Abstract: The sea urchin Strongylocentrotus purpuratus (order Camarodonta, family Strongylocentrotidae) can be found dominating low intertidal pool biomass on the southern coast of Oregon, USA. In this case study, three adult sea urchins were collected from their shared intertidal pool, and the bacteriome of their pharynx, gut tissue, and gut digesta, including their tide pool water and algae, was determined using targeted high-throughput sequencing (HTS) of the 16S rRNA genes and bioinformatics tools. Overall, the gut tissue demonstrated Arcobacter and Sulfurimonas (Epsilonproteobacteria) to be abundant, whereas the gut digesta was dominated by Psychromonas (Gammaproteobacteria), Propionigenium (Fusobacteria), and Flavobacteriales (Bacteroidetes).