Teaching Evolutionary Biology at Schools and Universities (Pdf)
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History and Philosophy of Systematic Biology
History and Philosophy of Systematic Biology Bock, W. J. (1973) Philosophical foundations of classical evolutionary classification Systematic Zoology 22: 375-392 Part of a general symposium on "Contemporary Systematic Philosophies," there are some other interesting papers here. Brower, A. V. Z. (2000) Evolution Is Not a Necessary Assumption of Cladistics Cladistics 16: 143- 154 Dayrat, Benoit (2005) Ancestor-descendant relationships and the reconstruction of the Tree of Lif Paleobiology 31: 347-353 Donoghue, M.J. and J.W. Kadereit (1992) Walter Zimmermann and the growth of phylogenetic theory Systematic Biology 41: 74-84 Faith, D. P. and J. W. H. Trueman (2001) Towards an inclusive philosophy for phylogenetic inference Systematic Biology 50: 331-350 Gaffney, E. S. (1979) An introduction to the logic of phylogeny reconstruction, pp. 79-111 in Cracraft, J. and N. Eldredge (eds.) Phylogenetic Analysis and Paleontology Columbia University Press, New York. Gilmour, J. S. L. (1940) Taxonomy and philosophy, pp. 461-474 in J. Huxley (ed.) The New Systematics Oxford Hull, D. L. (1978) A matter of individuality Phil. of Science 45: 335-360 Hull, D. L. (1978) The principles of biological classification: the use and abuse of philosophy Hull, D. L. (1984) Cladistic theory: hypotheses that blur and grow, pp. 5-23 in T. Duncan and T. F. Stuessy (eds.) Cladistics: Perspectives on the Reconstruction of Evolutionary History Columbia University Press, New York * Hull, D. L. (1988) Science as a process: an evolutionary account of the social and conceptual development of science University of Chicago Press. An already classic work on the recent, violent history of systematics; used as data for Hull's general theories about scientific change. -
1. Adaptation and the Evolution of Physiological Characters
Bennett, A. F. 1997. Adaptation and the evolution of physiological characters, pp. 3-16. In: Handbook of Physiology, Sect. 13: Comparative Physiology. W. H. Dantzler, ed. Oxford Univ. Press, New York. 1. Adaptation and the evolution of physiological characters Department of Ecology and Evolutionary Biology, University of California, ALBERT F. BENNETT 1 Irvine, California among the biological sciences (for example, behavioral CHAPTER CONTENTS science [I241). The Many meanings of "Adaptationn In general, comparative physiologists have been Criticisms of Adaptive Interpretations much more successful in, and have devoted much more Alternatives to Adaptive Explanations energy to, pursuing the former rather than the latter Historical inheritance goal (37). Most of this Handbook is devoted to an Developmentai pattern and constraint Physical and biomechanical correlation examination of mechanism-how various physiologi- Phenotypic size correlation cal systems function in various animals. Such compara- Genetic correlations tive studies are usually interpreted within a specific Chance fixation evolutionary context, that of adaptation. That is, or- Studying the Evolution of Physiological Characters ganisms are asserted to be designed in the ways they Macroevolutionary studies Microevolutionary studies are and to function in the ways they do because of Incorporating an Evolutionary Perspective into Physiological Studies natural selection which results in evolutionary change. The principal textbooks in the field (for example, refs. 33, 52, 102, 115) make explicit reference in their titles to the importance of adaptation to comparative COMPARATIVE PHYSIOLOGISTS HAVE TWO GOALS. The physiology, as did the last comparative section of this first is to explain mechanism, the study of how organ- Handbook (32). Adaptive evolutionary explanations isms are built functionally, "how animals work" (113). -
Auditory Experience Controls the Maturation of Song Discrimination and Sexual Response in Drosophila Xiaodong Li, Hiroshi Ishimoto, Azusa Kamikouchi*
RESEARCH ARTICLE Auditory experience controls the maturation of song discrimination and sexual response in Drosophila Xiaodong Li, Hiroshi Ishimoto, Azusa Kamikouchi* Graduate School of Science, Nagoya University, Nagoya, Japan Abstract In birds and higher mammals, auditory experience during development is critical to discriminate sound patterns in adulthood. However, the neural and molecular nature of this acquired ability remains elusive. In fruit flies, acoustic perception has been thought to be innate. Here we report, surprisingly, that auditory experience of a species-specific courtship song in developing Drosophila shapes adult song perception and resultant sexual behavior. Preferences in the song-response behaviors of both males and females were tuned by social acoustic exposure during development. We examined the molecular and cellular determinants of this social acoustic learning and found that GABA signaling acting on the GABAA receptor Rdl in the pC1 neurons, the integration node for courtship stimuli, regulated auditory tuning and sexual behavior. These findings demonstrate that maturation of auditory perception in flies is unexpectedly plastic and is acquired socially, providing a model to investigate how song learning regulates mating preference in insects. DOI: https://doi.org/10.7554/eLife.34348.001 Introduction Vocal learning in infants or juvenile birds relies heavily on the early experience of the adult conspe- cific sounds. In humans, early language input is necessary to form the ability of phonetic distinction *For correspondence: and pattern detection in the phase of auditory learning (Doupe and Kuhl, 1999; Kuhl, 2004). [email protected] Because of the strong parallels between speech acquisition of humans and song learning of song- Competing interests: The birds, and the difficulties to investigate the neural mechanisms of human early auditory memory at authors declare that no cellular resolution, songbirds have been used as a predominant model in studying memory formation competing interests exist. -
The Evolution of Bird Song: Male and Female Response to Song Innovation in Swamp Sparrows
ANIMAL BEHAVIOUR, 2001, 62, 1189–1195 doi:10.1006/anbe.2001.1854, available online at http://www.idealibrary.com on The evolution of bird song: male and female response to song innovation in swamp sparrows STEPHEN NOWICKI*, WILLIAM A. SEARCY†, MELISSA HUGHES‡ & JEFFREY PODOS§ *Evolution, Ecology & Organismal Biology Group, Department of Biology, Duke University †Department of Biology, University of Miami ‡Department of Ecology and Evolutionary Biology, Princeton University §Department of Biology, University of Massachusetts at Amherst (Received 27 April 2000; initial acceptance 24 July 2000; final acceptance 19 April 2001; MS. number: A8776) Closely related species of songbirds often show large differences in song syntax, suggesting that major innovations in syntax must sometimes arise and spread. Here we examine the response of male and female swamp sparrows, Melospiza georgiana, to an innovation in song syntax produced by males of this species. Young male swamp sparrows that have been exposed to tutor songs with experimentally increased trill rates reproduce these songs with periodic silent gaps (Podos 1996, Animal Behaviour, 51, 1061–1070). This novel temporal pattern, termed ‘broken syntax’, has been demonstrated to transmit across generations (Podos et al. 1999, Animal Behaviour, 58, 93–103). We show here that adult male swamp sparrows respond more strongly in territorial playback tests to songs with broken syntax than to heterospecific songs, and equally strongly to conspecific songs with normal and broken syntax. In tests using the solicitation display assay, adult female swamp sparrows respond more to broken syntax than to heterospecific songs, although they respond significantly less to conspecific songs with broken syntax than to those with normal syntax. -
The Unique Skeleton of Siliceous Sponges (Porifera; Hexactinellida and Demospongiae) That Evolved first from the Urmetazoa During the Proterozoic: a Review
Biogeosciences, 4, 219–232, 2007 www.biogeosciences.net/4/219/2007/ Biogeosciences © Author(s) 2007. This work is licensed under a Creative Commons License. The unique skeleton of siliceous sponges (Porifera; Hexactinellida and Demospongiae) that evolved first from the Urmetazoa during the Proterozoic: a review W. E. G. Muller¨ 1, Jinhe Li2, H. C. Schroder¨ 1, Li Qiao3, and Xiaohong Wang4 1Institut fur¨ Physiologische Chemie, Abteilung Angewandte Molekularbiologie, Duesbergweg 6, 55099 Mainz, Germany 2Institute of Oceanology, Chinese Academy of Sciences, 7 Nanhai Road, 266071 Qingdao, P. R. China 3Department of Materials Science and Technology, Tsinghua University, 100084 Beijing, P. R. China 4National Research Center for Geoanalysis, 26 Baiwanzhuang Dajie, 100037 Beijing, P. R. China Received: 8 January 2007 – Published in Biogeosciences Discuss.: 6 February 2007 Revised: 10 April 2007 – Accepted: 20 April 2007 – Published: 3 May 2007 Abstract. Sponges (phylum Porifera) had been considered an axial filament which harbors the silicatein. After intracel- as an enigmatic phylum, prior to the analysis of their genetic lular formation of the first lamella around the channel and repertoire/tool kit. Already with the isolation of the first ad- the subsequent extracellular apposition of further lamellae hesion molecule, galectin, it became clear that the sequences the spicules are completed in a net formed of collagen fibers. of sponge cell surface receptors and of molecules forming the The data summarized here substantiate that with the find- intracellular signal transduction pathways triggered by them, ing of silicatein a new aera in the field of bio/inorganic chem- share high similarity with those identified in other metazoan istry started. -
Basal Metazoans - Dirk Erpenbeck, Simion Paul, Michael Manuel, Paulyn Cartwright, Oliver Voigt and Gert Worheide
EVOLUTION OF PHYLOGENETIC TREE OF LIFE - Basal Metazoans - Dirk Erpenbeck, Simion Paul, Michael Manuel, Paulyn Cartwright, Oliver Voigt and Gert Worheide BASAL METAZOANS Dirk Erpenbeck Ludwig-Maximilians Universität München, Germany Simion Paul and Michaël Manuel Université Pierre et Marie Curie in Paris, France. Paulyn Cartwright University of Kansas USA. Oliver Voigt and Gert Wörheide Ludwig-Maximilians Universität München, Germany Keywords: Metazoa, Porifera, sponges, Placozoa, Cnidaria, anthozoans, jellyfishes, Ctenophora, comb jellies Contents 1. Introduction on ―Basal Metazoans‖ 2. Phylogenetic relationships among non-bilaterian Metazoa 3. Porifera (Sponges) 4. Placozoa 5. Ctenophora (Comb-jellies) 6. Cnidaria 7. Cultural impact and relevance to human welfare Glossary Bibliography Biographical Sketch Summary Basal metazoans comprise the four non-bilaterian animal phyla Porifera (sponges), Cnidaria (anthozoans and jellyfishes), Placozoa (Trichoplax) and Ctenophora (comb jellies). The phylogenetic position of these taxa in the animal tree is pivotal for our understanding of the last common metazoan ancestor and the character evolution all Metazoa,UNESCO-EOLSS but is much debated. Morphological, evolutionary, internal and external phylogenetic aspects of the four phyla are highlighted and discussed. SAMPLE CHAPTERS 1. Introduction on “Basal Metazoans” In many textbooks the term ―lower metazoans‖ still refers to an undefined assemblage of invertebrate phyla, whose phylogenetic relationships were rather undefined. This assemblage may contain both bilaterian and non-bilaterian taxa. Currently, ―Basal Metazoa‖ refers to non-bilaterian animals only, four phyla that lack obvious bilateral symmetry, Porifera, Placozoa, Cnidaria and Ctenophora. ©Encyclopedia of Life Support Systems (EOLSS) EVOLUTION OF PHYLOGENETIC TREE OF LIFE - Basal Metazoans - Dirk Erpenbeck, Simion Paul, Michael Manuel, Paulyn Cartwright, Oliver Voigt and Gert Worheide These four phyla have classically been known as ―diploblastic‖ Metazoa. -
Species and Speciation
Species and Speciation Objectives: • Understand the Biological Species Concept its strengths and its weaknesses. • Understand the types of information biologists use when delineating species, and the strengths and weaknesses of these different sources of information. • Understand the terms cryptic species and sexual dimorphism , and be able to give examples of each. • Understand the difference between anagenesis and cladogenesis . • Understand the terms adaptive radiation , niche and key innovation . • Understand the difference between prezygotic and postzygotic reproductive barriers. • Be familiar with the diversity of Darwin’s Finches and understand the relationship between diet and beak form in these birds. • Understand the mechanics of producing bird songs, and know the components of song structure. • Understand the relationship between beak form and song structure in Darwin’s Finches, and know what is meant by vocal deviation . • Understand the importance of song structure in mate recognition in Darwin’s Finches and understand the impact that changes in beak form may have in the maintenance of distinct species of Darwin’s Finches. • Be comfortable with using Excel to generate a graph. Important Note!! – Throughout this Lab you will be asked to open up documents on your computer. All of these may be found online (see the course website, then go to Lab Information). Introduction: In a previous lab, the focus was on A C B changes in allele frequencies within a population. This is evolution, but it represents anagenesis (or evolution within a single branch Anagenesis of an evolutionary tree). This week we will turn our focus towards cladogenesis (or the branching of an evolutionary tree to produce Cladogenesis new clades – e.g. -
EMPHASIS in EVOLUTION and SYSTEMATICS Emphasis Adviser: Dr
CHECK LIST FOR THE B.S. DEGREE IN BIOLOGY EMPHASIS IN EVOLUTION AND SYSTEMATICS Emphasis Adviser: Dr. Tod Reeder (LS-264), 2008-09 Catalog (Use this as a worksheet. Refer to your catalog for official requirements.) Systematicists and evolutionary biologists study patterns of evolutionary relationships among species and evolutionary processes underlying these patterns. Systematics involves detailed study of a group of organisms to determine its evolutionary relationships (phylogeny), clarify its classification, and assess trends in ecology, biogeography, and evolutionary processes. Evolutionary biology explores mechanisms of evolutionary change, including studies of natural selection, migration, mating systems, and genetic drift. Specific studies in systematics or evolutionary biology may encompass anatomy, behavior, biogeography, development, ecology, genetics, and molecular biology of both living and fossil organisms. Graduates can work in universities, museums, botanical gardens, and zoos or with federal, state, and private agencies. Positions may include basic or applied research, such as assessment of biodiversity or environmental quality. Acquisition of laboratory skills, such as electron microscopy or nucleotide sequencing, are required for careers in evolutionary biology. Students should make a particular effort to gain research experience through Undergraduate Research or Special Studies. PREPARATION FOR THE MAJOR (39 units of lower division courses) Biol 201A Principles of Cell & Molecular Biol. 4 ____ Math 121 Calculus for the Life Sciences I 3 ____ Biol 201B Principles of Organismal Biology 4 ____ Math 122 Calculus for the Life Sciences II 3 ____ Biol 215 Biostatistics 3 ____ Phys 180A Fundamentals of Physics 3 ____ Chem 200 General Chemistry 5 ____ Phys 182A Physical Measurements 1 ____ Chem 201 General Chemistry 5 ____ Phys 180B Fundamentals of Physics 3 ____ Chem 231 Organic Chemistry (or 232 and 232L) 4 ____ Phys 182B Physical Measurements 1 ____ The Biology and Microbiology majors are designated as impacted majors. -
Evolutionary Morphology, Innovation, and the Synthesis of Evolutionary and Developmental Biology
Biology and Philosophy 18: 309–345, 2003. © 2003 Kluwer Academic Publishers. Printed in the Netherlands. Evolutionary Morphology, Innovation, and the Synthesis of Evolutionary and Developmental Biology ALAN C. LOVE Department of History and Philosophy of Science University of Pittsburgh CL 1017 Pittsburgh, PA 15260 U.S.A. E-mail: [email protected] Abstract. One foundational question in contemporary biology is how to ‘rejoin’ evolution and development. The emerging research program (evolutionary developmental biology or ‘evo- devo’) requires a meshing of disciplines, concepts, and explanations that have been developed largely in independence over the past century. In the attempt to comprehend the present separation between evolution and development much attention has been paid to the split between genetics and embryology in the early part of the 20th century with its codification in the exclusion of embryology from the Modern Synthesis. This encourages a characterization of evolutionary developmental biology as the marriage of evolutionary theory and embryology via developmental genetics. But there remains a largely untold story about the significance of morphology and comparative anatomy (also minimized in the Modern Synthesis). Functional and evolutionary morphology are critical for understanding the development of a concept central to evolutionary developmental biology, evolutionary innovation. Highlighting the discipline of morphology and the concepts of innovation and novelty provides an alternative way of conceptualizing the ‘evo’ and the ‘devo’ to be synthesized. Key words: comparative anatomy, developmental genetics, embryology, evolutionary developmental biology, innovation, morphology, novelty, synthesis, typology 1. Introduction and methodology ... problems concerned with the orderly development of the individual are unrelated to those of the evolution of organisms through time .. -
Ree-2005-Evolution.Pdf
EVOLUTION INTERNATIONAL JOURNAL OF ORGANIC EVOLUTION PUBLISHED BY THE SOCIETY FOR THE STUDY OF EVOLUTION Vol. 59 February 2005 No. 2 Evolution, 59(2), 2005, pp. 257±265 DETECTING THE HISTORICAL SIGNATURE OF KEY INNOVATIONS USING STOCHASTIC MODELS OF CHARACTER EVOLUTION AND CLADOGENESIS RICHARD H. REE Department of Botany, Field Museum of Natural History, 1400 South Lake Shore Drive, Chicago, Illinois 60605 E-mail: rree@®eldmuseum.org Abstract. Phylogenetic evidence for biological traits that increase the net diversi®cation rate of lineages (key in- novations) is most commonly drawn from comparisons of clade size. This can work well for ancient, unreversed traits and for correlating multiple trait origins with higher diversi®cation rates, but it is less suitable for unique events, recently evolved innovations, and traits that exhibit homoplasy. Here I present a new method for detecting the phylogenetic signature of key innovations that tests whether the evolutionary history of the candidate trait is associated with shorter waiting times between cladogenesis events. The method employs stochastic models of character evolution and cladogenesis and integrates well into a Bayesian framework in which uncertainty in historical inferences (such as phylogenetic relationships) is allowed. Applied to a well-known example in plants, nectar spurs in columbines, the method gives much stronger support to the key innovation hypothesis than previous tests. Key words. Aquilegia, Bayesian inference, character mapping, diversi®cation rate, macroevolution, phylogeny. Received June 11, 2004. Accepted November 10, 2004. The tempo of evolution is a subject of general interest to al. 1988), plant latex and resin canals (Farrell et al. 1991), evolutionary biologists, from nucleotide mutation rates with- ¯oral nectar spurs (Hodges 1997), and ¯ower symmetry (Sar- in populations to the proliferation of branches on the tree of gent 2004). -
Evolutionary History of Life
Evolutionary history of life The evolutionary history of life on Earth traces the processes by which living and fossil organisms evolved, from the earliest emergence of life to the present. Earth formed about 4.5 billion years (Ga) ago and evidence suggests life emerged prior to 3.7 Ga.[1][2][3] (Although there is some evidence of life as early as 4.1 to 4.28 Ga, it remains controversial due to the possible non- biological formation of the purported fossils.[1][4][5][6][7]) The similarities among all known present-day species indicate that they have diverged through the process of evolution from a common ancestor.[8] Approximately 1 trillion species currently live on Earth[9] of which only 1.75–1.8 million have been named[10][11] and 1.6 million documented in a central database.[12] These currently living species represent less than one percent of all species that have ever lived on earth.[13][14] The earliest evidence of life comes from biogenic carbon signatures[2][3] and stromatolite fossils[15] discovered in 3.7 billion- Life timeline Ice Ages year-old metasedimentary rocks from western Greenland. In 2015, 0 — Primates Quater nary Flowers ←Earliest apes possible "remains of biotic life" were found in 4.1 billion-year-old P Birds h Mammals [16][17] – Plants Dinosaurs rocks in Western Australia. In March 2017, putative evidence of Karo o a n ← Andean Tetrapoda possibly the oldest forms of life on Earth was reported in the form of -50 0 — e Arthropods Molluscs r ←Cambrian explosion fossilized microorganisms discovered in hydrothermal -
Evolutionary Biology
EVOLUTIONARY BIOLOGY SUBDISCIPLINES OF EVOLUTIONARY BIOLOGY Behavioral Evolution • Evolution of mating systems, courtship behavior, foraging behavior, predator escape mechanisms, and cooperation. Evolutionary Developmental Biology (Evo-Devo) • Evolutionary change in the processes that translate genetic information (genotype) into its behavioral, anatomical, physiological, and biochemical characteristics (phenotype). Evolutionary Ecology • How the life histories, diets, and other ecological features of species evolve, and how these processes affect the composition and properties of communities and ecosystems, also, how species evolve in response to one another (e.g. evolution of predator-prey relationships). Evolutionary Genetics • The origin of variation; the patterns of variation within populations and species, along with the causes and consequences of these variations. Paleobiology • Large-scale evolutionary patterns in the fossil record. Examines origins and fates of lineages, major groups, and anatomical and behavioral novelties, evolutionary trends, and changes throughout geographic areas and geologic time. Evolutionary Physiology/Morphology • How physiological, biochemical, and anatomical features of an organism provide adaptation to its environment and lifeways. Also examines the history of these adaptations. Human Evolution • Many evolutionary biologists use conceptual issues of the subdisciplines to study a particular group of organisms. Of these groups, one draws special attention—the human lineage. Molecular Evolution • Investigates the history and causes of evolutionary changes in nucleotide sequences, the structure and number of genes, their physical arrangement on chromosomes, and other molecular phenomena, including the evolution of genomes. Systematics • Distinguishes and names species, infers phylogenetic relationships among species and classifies species based on their evolutionary relationships. CASE WESTERN RESERVE UNIVERSITY.