Evolutionary Morphology, Innovation, and the Synthesis of Evolutionary and Developmental Biology
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From Developmental Constraint to Evolvability
From Developmental Constraint to Evolvability How Concepts Figure in Explanation and Disciplinary Identity Ingo Brigandt Department of Philosophy, University of Alberta 2-40 Assiniboia Hall, Edmonton, AB T6G2E7, Canada [email protected] Abstract The concept of developmental constraint was at the heart of develop- mental approaches to evolution of the 1980s. While this idea was widely used to criticize neo-Darwinian evolutionary theory, critique does not yield an alternative framework that offers evolutionary explanations. In current Evo-devo the concept of constraint is of minor importance, whereas notions as evolvability are at the center of attention. The latter clearly defines an explanatory agenda for evolution- ary research, so that one could view the historical shift from ‘developmental con- straint’ towards ‘evolvability’ as the move from a concept that is a mere tool of criticism to a concept that establishes a positive explanatory project. However, by taking a look at how the concept of constraint was employed in the 1980s, I argue that developmental constraint was not just seen as restricting possibilities (‘con- straining’), but also as facilitating morphological change in several ways. Ac- counting for macroevolutionary transformation and the origin of novel form was an aim of these developmental approaches to evolution. Thus, the concept of de- velopmental constraint was part of a positive explanatory agenda long before the advent of Evo-devo as a genuine scientific discipline. In the 1980s, despite the lack of a clear disciplinary identity, this concept coordinated research among pale- ontologists, morphologists, and developmentally inclined evolutionary biologists. I discuss the different functions that scientific concepts can have, highlighting that instead of classifying or explaining natural phenomena, concepts such as ‘devel- opmental constraint’ and ‘evolvability’ are more important in setting explanatory agendas so as to provide intellectual coherence to scientific approaches. -
Advanced Morphometric Techniques Applied to The
UNIVERSIDAD POLITÉCNICA DE MADRID ESCUELA TÉCNICA SUPERIOR DE INGENIEROS DE TELECOMUNICACIÓN ADVANCED MORPHOMETRIC TECHNIQUES APPLIED TO THE STUDY OF HUMAN BRAIN ANATOMY TESIS DOCTORAL Yasser Alemán Gómez Ingeniero en Tecnologías Nucleares y Energéticas Máster en Neurociencias Madrid, 2015 DEPARTAMENTO DE INGENIERÍA ELECTRÓNICA ESCUELA TÉCNICA SUPERIOR DE INGENIEROS DE TELECOMUNICACIÓN PHD THESIS ADVANCED MORPHOMETRIC TECHNIQUES APPLIED TO THE STUDY OF HUMAN BRAIN ANATOMY AUTHOR Yasser Alemán Gómez Ing. en Tecnologías Nucleares y Energéticas MSc en Neurociencias ADVISOR Manuel Desco Menéndez, MScE, MD, PhD Madrid, 2015 Departamento de Ingeniería Electrónica Escuela Técnica Superior de Ingenieros de Telecomunicación Universidad Politécnica de Madrid Ph.D. Thesis Advanced morphometric techniques applied to the study of human brain anatomy Tesis doctoral Técnicas avanzadas de morfometría aplicadas al estudio de la anatomía cerebral humana Author: Yasser Alemán Gómez Advisor: Manuel Desco Menéndez Committee: Andrés Santos Lleó Universidad Politécnica de Madrid, Madrid, Spain Javier Pascau Gonzalez-Garzón Universidad Carlos III de Madrid, Madrid, Spain Raymond Salvador Civil FIDMAG – Germanes Hospitalàries, Barcelona, Spain Pablo Campo Martínez-Lage Universidad Autónoma de Madrid, Madrid, Spain Juan Domingo Gispert López Universidad Pompeu Fabra, Barcelona, Spain María Jesús Ledesma Carbayo Universidad Politécnica de Madrid, Madrid, Spain Juan José Vaquero López Universidad Carlos III de Madrid, Madrid, Spain Esta Tesis ha sido desarrollada en el Laboratorio de Imagen Médica de la Unidad de Medicina y Cirugía Experimental del Instituto de Investigación Sanitaria Gregorio Marañón y en colaboración con el Servicio de Psiquiatría del Niño y del Adolescente del Departamento de Psiquiatría del Hospital General Universitario Gregorio Marañón de Madrid, España. Tribunal nombrado por el Sr. -
A Practical Introduction to Landmark-Based Geometric Morphometrics
A PRACTICAL INTRODUCTION TO LANDMARK-BASED GEOMETRIC MORPHOMETRICS MARK WEBSTER Department of the Geophysical Sciences, University of Chicago, 5734 South Ellis Avenue, Chicago, IL 60637 and H. DAVID SHEETS Department of Physics, Canisius College, 2001 Main Street, Buffalo, NY 14208 ABSTRACT.—Landmark-based geometric morphometrics is a powerful approach to quantifying biological shape, shape variation, and covariation of shape with other biotic or abiotic variables or factors. The resulting graphical representations of shape differences are visually appealing and intuitive. This paper serves as an introduction to common exploratory and confirmatory techniques in landmark-based geometric morphometrics. The issues most frequently faced by (paleo)biologists conducting studies of comparative morphology are covered. Acquisition of landmark and semilandmark data is discussed. There are several methods for superimposing landmark configu- rations, differing in how and in the degree to which among-configuration differences in location, scale, and size are removed. Partial Procrustes superimposition is the most widely used superimposition method and forms the basis for many subsequent operations in geometric morphometrics. Shape variation among superimposed con- figurations can be visualized as a scatter plot of landmark coordinates, as vectors of landmark displacement, as a thin-plate spline deformation grid, or through a principal components analysis of landmark coordinates or warp scores. The amount of difference in shape between two configurations can be quantified as the partial Procrustes distance; and shape variation within a sample can be quantified as the average partial Procrustes distance from the sample mean. Statistical testing of difference in mean shape between samples using warp scores as variables can be achieved through a standard Hotelling’s T2 test, MANOVA, or canonical variates analysis (CVA). -
Activities of The
activities of the Inhalt Contents Seite Page 2 1 Jahresrückblick und Struktur des KLI Review 2010 and Structure of the KLI 6 2 Projekte Projects 2.1 Bewerbungen / Applications 2.2 Junior Gastwissenschaftler / Junior Visiting Fellows 2.3 Postdoktoranden-Stipendien / Postdoctoral Fellowships 2.4 Senior Stipendiaten / Senior Fellows 2.5 Austausch-Stipendium / Exchange Felllowship 2.6 Gastwissenschaftler / Visiting Scientists 32 3 Wissenschaftliche Veranstaltungen Meetings and Lectures 3.1 Altenberg Workshops 3.2 Symposia 3.3 Rupert Riedl Lecture 3.4 Mittagsdiskussionen / Brown Bag Discussions 50 4 Publikationen Publications 4.1 Vienna Series in Theoretical Biology 4.2 Sammelbände und Bücher / Edited Volumes and Books 4.3 Fachartikel / Professional Papers 4.4 Artikel im Druck / Papers in Press 4.5 Zeitschrift Biological Theory / Journal 4.6 Vorträge und Kongressbeiträge / Scientific Presentations 70 5 Weitere Aktivitäten Further Activities 5.1 EASPLS Graduate Meeting 5.2 Zusätzliche Förderungen Jahresrückblick und Struktur des KLI Review 2010 and Structure of the KLI 61 Through its in-house activities and freshly conceived workshops and seminar series the KLI has uniquely provided a context for rethinking major questions in developmental, cognitive, and evolutionary biology. Stuart Newman, New York Medical College Jahresrückblick und Struktur des KLI Review 2010 and Structure of the KLI 1.1 Jahresrückblick 2010 The Year in Review Der weltweit zu beobachtende Wandel der akademischen Institutionen hat in 3 den letzten Jahren auch Österreich voll erfasst. Das Gespenst der „Nützlichkeit“ geht um. Teils erzwungen, teils in vorauseilendem bürokratischen Eifer bemessen die Universitäten ihre eigenen Leistungen immer mehr nach ökonomistischen Managementkriterien. Die eigentlichen Aufgaben der akademischen Einrichtun- gen – Erkennen, Verstehen, Analyse, Wissen, Kritik, Diskurs, Bildung – die funda- mental auf intellektueller Unabhängigkeit beruhen, werden unter dem Gewicht sogenannter Effizienzkriterien zunehmend zurückgedrängt. -
Systematic Morphology of Fishes in the Early 21St Century
Copeia 103, No. 4, 2015, 858–873 When Tradition Meets Technology: Systematic Morphology of Fishes in the Early 21st Century Eric J. Hilton1, Nalani K. Schnell2, and Peter Konstantinidis1 Many of the primary groups of fishes currently recognized have been established through an iterative process of anatomical study and comparison of fishes that has spanned a time period approaching 500 years. In this paper we give a brief history of the systematic morphology of fishes, focusing on some of the individuals and their works from which we derive our own inspiration. We further discuss what is possible at this point in history in the anatomical study of fishes and speculate on the future of morphology used in the systematics of fishes. Beyond the collection of facts about the anatomy of fishes, morphology remains extremely relevant in the age of molecular data for at least three broad reasons: 1) new techniques for the preparation of specimens allow new data sources to be broadly compared; 2) past morphological analyses, as well as new ideas about interrelationships of fishes (based on both morphological and molecular data) provide rich sources of hypotheses to test with new morphological investigations; and 3) the use of morphological data is not limited to understanding phylogeny and evolution of fishes, but rather is of broad utility to understanding the general biology (including phenotypic adaptation, evolution, ecology, and conservation biology) of fishes. Although in some ways morphology struggles to compete with the lure of molecular data for systematic research, we see the anatomical study of fishes entering into a new and exciting phase of its history because of recent technological and methodological innovations. -
Comparative Anatomy and Functional Morphology University of California at Berkeley Department of Integrative Biology (5 Units)
Comparative Anatomy and Functional Morphology University of California at Berkeley Department of Integrative Biology (5 Units) Course Description: This course is an in-depth look at the biology of form and function. We will examine vertebrate anatomy to understand how structures develop, how they have evolved, and how they interact with one another to allow animals to live in a variety of environments. We will study the integration of the skeletal, muscular, nervous, vascular, respiratory, digestive, endocrine, and urogenital systems to explore the historical and present diversity of vertebrate animals. Format: This course will include lecture, discussion, and laboratory sessions. Lectures will focus primarily on broad concepts and ideas. Discussion sections will emphasize how to both read and analyze primary scientific literature. Laboratory sessions will allow students to physically explore the morphologies of a diversity of taxa and will include museum specimens as well as dissections of whole animals. Lecture: Monday, Tuesday, Wednesday, and Thursday, 9:30-11:00a.m. Discussion: Monday and Thursday, 11:00a.m. or 12:00p.m. Laboratory: Monday, Tuesday, Wednesday, and Thursday, 2:00-5:00p.m. All students must take lectures, discussion sections, and laboratory sections concurrently. Attendance of all sections is required. Goals: 1. A comparative approach will allow students to gain experience in identifying similarities and differences among taxa and further their understanding of how both evolutionary and environmental contexts influence the morphology and function. 2. Students will improve their ability to ask questions and answer them using scientific methodology. 3. Students will gain factual knowledge of terms and concepts regarding vertebrate anatomy and functional morphology. -
Bacterial Size, Shape and Arrangement & Cell Structure And
Lecture 13, 14 and 15: bacterial size, shape and arrangement & Cell structure and components of bacteria and Functional anatomy and reproduction in bacteria Bacterial size, shape and arrangement Bacteria are prokaryotic, unicellular microorganisms, which lack chlorophyll pigments. The cell structure is simpler than that of other organisms as there is no nucleus or membrane bound organelles.Due to the presence of a rigid cell wall, bacteria maintain a definite shape, though they vary as shape, size and structure. When viewed under light microscope, most bacteria appear in variations of three major shapes: the rod (bacillus), the sphere (coccus) and the spiral type (vibrio). In fact, structure of bacteria has two aspects, arrangement and shape. So far as the arrangement is concerned, it may Paired (diplo), Grape-like clusters (staphylo) or Chains (strepto). In shape they may principally be Rods (bacilli), Spheres (cocci), and Spirals (spirillum). Size of Bacterial Cell The average diameter of spherical bacteria is 0.5- 2.0 µm. For rod-shaped or filamentous bacteria, length is 1-10 µm and diameter is 0.25-1 .0 µm. E. coli , a bacillus of about average size is 1.1 to 1.5 µm wide by 2.0 to 6.0 µm long. Spirochaetes occasionally reach 500 µm in length and the cyanobacterium Accepted wisdom is that bacteria are smaller than eukaryotes. But certain cyanobacteria are quite large; Oscillatoria cells are 7 micrometers diameter. The bacterium, Epulosiscium fishelsoni , can be seen with the naked eye (600 mm long by 80 mm in diameter). One group of bacteria, called the Mycoplasmas, have individuals with size much smaller than these dimensions. -
Evolution & Development
DOI: 10.1111/ede.12315 RESEARCH Developmental structuring of phenotypic variation: A case study with a cellular automata model of ontogeny Wim Hordijk1 | Lee Altenberg2 1Konrad Lorenz Institute for Evolution and Cognition Research, Klosterneuburg, Abstract Austria Developmental mechanisms not only produce an organismal phenotype, but 2University of Hawai‘iatMānoa, they also structure the way genetic variation maps to phenotypic variation. ‘ Honolulu, Hawai i Here, we revisit a computational model for the evolution of ontogeny based on Correspondence cellular automata, in which evolution regularly discovered two alternative Wim Hordijk, Konrad Lorenz Institute for mechanisms for achieving a selected phenotype, one showing high modularity, Evolution and Cognition Research, the other showing morphological integration. We measure a primary variational Martinstrasse 12, 3400 Klosterneuburg, Austria. property of the systems, their distribution of fitness effects of mutation. We find Email: [email protected] that the modular ontogeny shows the evolution of mutational robustness and ontogenic simplification, while the integrated ontogeny does not. We discuss the wider use of this methodology on other computational models of development as well as real organisms. 1 | INTRODUCTION summarize, “almost anything can be changed if it shows phenotypic variation” and “combinations of traits, even The idea that phenotypic variation could ever be those unfavorably correlated, can be changed”). Once the “unbiased” is a historical artifact coming from two main premises of this “pan‐variationism” are accepted, pans- sources: First were the early characterizations of quanti- electionism is the natural conclusion—in other words, if tative genetic variation for single traits or small numbers variation is diffusing in every phenotypic direction, the of traits. -
Morphometric Analysis of Brain in Newborn with Congenital Diaphragmatic Hernia
brain sciences Article Morphometric Analysis of Brain in Newborn with Congenital Diaphragmatic Hernia Martina Lucignani 1, Daniela Longo 2, Elena Fontana 2, Maria Camilla Rossi-Espagnet 2,3, Giulia Lucignani 2, Sara Savelli 4, Stefano Bascetta 4, Stefania Sgrò 5, Francesco Morini 6, Paola Giliberti 6 and Antonio Napolitano 1,* 1 Medical Physics Department, Bambino Gesù Children’s Hospital, IRCCS, 00165 Rome, Italy; [email protected] 2 Neuroradiology Unit, Imaging Department, Bambino Gesù Children’s Hospital, IRCCS, 00165 Rome, Italy; [email protected] (D.L.); [email protected] (E.F.); [email protected] (M.C.R.-E.); [email protected] (G.L.) 3 NESMOS Department, Sant’Andrea Hospital, Sapienza University, 00189 Rome, Italy 4 Imaging Department, Bambino Gesù Children’s Hospital and Research Institute, 00165 Rome, Italy; [email protected] (S.S.); [email protected] (S.B.) 5 Department of Anesthesia and Critical Care, Bambino Gesù Children’s Hospital, IRCCS, 00165 Rome, Italy; [email protected] 6 Department of Medical and Surgical Neonatology, Bambino Gesù Children’s Hospital, IRCCS, 00165 Rome, Italy; [email protected] (F.M.); [email protected] (P.G.) * Correspondence: [email protected]; Tel.: +39-333-3214614 Abstract: Congenital diaphragmatic hernia (CDH) is a severe pediatric disorder with herniation of abdominal viscera into the thoracic cavity. Since neurodevelopmental impairment constitutes a common outcome, we performed morphometric magnetic resonance imaging (MRI) analysis on Citation: Lucignani, M.; Longo, D.; CDH infants to investigate cortical parameters such as cortical thickness (CT) and local gyrification Fontana, E.; Rossi-Espagnet, M.C.; index (LGI). -
Structure and Morphology Micro-‐Level Morphology
Chapter 2 Majority of illustraons in this presentaon are from Biological Psychology 4th edi3on (© Sinuer Publicaons) Structure and Morphology 1. To understand behavior, as it relates to many processes in the brain, it is important to study the structure or morphology of the brain. 2. We can study the structure of brain at the micro level, looking at small units like neurons, dendrites and receptors etc. or at the macro level, looking at the regions, areas, and nuclei and/or study the brain. 2 Micro-Level Morphology 1. To study the morphology of brain at the micro level tools and techniques had to be developed. One such development was the inven3on of the op3cal microscope (Leeuwenhoek, 17th century). 2. More recent developments include electron microscope with increased magnificaon. 3 1 Micro-Level Morphology 3. Looking at he brain meant cung the brain, staining it, and make them worthy of the microscope. Many different staining methods have developed. 4 Camillo Golgi 1. Golgi developed the silver method to stain the nerve 3ssue. 2. Believed that neurons connected in a (1737-1798 AD) “syncium”, by blending. This theory was called re3cular theory of neurons. 5 Ramón y Cajal 1. Cajal also used the silver method to stain the brain, but 2. Believed that neurons were separate and communicated through gaps (1852-1934) (synapse). This came to be known as the neuron doctrine. 6 2 Cells in Brain 7 Neurons There are 100 billion neurons in the human brain. Packed with 10 3mes more glial cells. Each neuron is divided into three parts; dendrites, cell body and axon. -
Species and Speciation
Species and Speciation Objectives: • Understand the Biological Species Concept its strengths and its weaknesses. • Understand the types of information biologists use when delineating species, and the strengths and weaknesses of these different sources of information. • Understand the terms cryptic species and sexual dimorphism , and be able to give examples of each. • Understand the difference between anagenesis and cladogenesis . • Understand the terms adaptive radiation , niche and key innovation . • Understand the difference between prezygotic and postzygotic reproductive barriers. • Be familiar with the diversity of Darwin’s Finches and understand the relationship between diet and beak form in these birds. • Understand the mechanics of producing bird songs, and know the components of song structure. • Understand the relationship between beak form and song structure in Darwin’s Finches, and know what is meant by vocal deviation . • Understand the importance of song structure in mate recognition in Darwin’s Finches and understand the impact that changes in beak form may have in the maintenance of distinct species of Darwin’s Finches. • Be comfortable with using Excel to generate a graph. Important Note!! – Throughout this Lab you will be asked to open up documents on your computer. All of these may be found online (see the course website, then go to Lab Information). Introduction: In a previous lab, the focus was on A C B changes in allele frequencies within a population. This is evolution, but it represents anagenesis (or evolution within a single branch Anagenesis of an evolutionary tree). This week we will turn our focus towards cladogenesis (or the branching of an evolutionary tree to produce Cladogenesis new clades – e.g. -
Ree-2005-Evolution.Pdf
EVOLUTION INTERNATIONAL JOURNAL OF ORGANIC EVOLUTION PUBLISHED BY THE SOCIETY FOR THE STUDY OF EVOLUTION Vol. 59 February 2005 No. 2 Evolution, 59(2), 2005, pp. 257±265 DETECTING THE HISTORICAL SIGNATURE OF KEY INNOVATIONS USING STOCHASTIC MODELS OF CHARACTER EVOLUTION AND CLADOGENESIS RICHARD H. REE Department of Botany, Field Museum of Natural History, 1400 South Lake Shore Drive, Chicago, Illinois 60605 E-mail: rree@®eldmuseum.org Abstract. Phylogenetic evidence for biological traits that increase the net diversi®cation rate of lineages (key in- novations) is most commonly drawn from comparisons of clade size. This can work well for ancient, unreversed traits and for correlating multiple trait origins with higher diversi®cation rates, but it is less suitable for unique events, recently evolved innovations, and traits that exhibit homoplasy. Here I present a new method for detecting the phylogenetic signature of key innovations that tests whether the evolutionary history of the candidate trait is associated with shorter waiting times between cladogenesis events. The method employs stochastic models of character evolution and cladogenesis and integrates well into a Bayesian framework in which uncertainty in historical inferences (such as phylogenetic relationships) is allowed. Applied to a well-known example in plants, nectar spurs in columbines, the method gives much stronger support to the key innovation hypothesis than previous tests. Key words. Aquilegia, Bayesian inference, character mapping, diversi®cation rate, macroevolution, phylogeny. Received June 11, 2004. Accepted November 10, 2004. The tempo of evolution is a subject of general interest to al. 1988), plant latex and resin canals (Farrell et al. 1991), evolutionary biologists, from nucleotide mutation rates with- ¯oral nectar spurs (Hodges 1997), and ¯ower symmetry (Sar- in populations to the proliferation of branches on the tree of gent 2004).