Morphometric Analysis of Brain in Newborn with Congenital Diaphragmatic Hernia
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Gyrification from Constrained Cortical Expansion
Gyrification from constrained cortical expansion Tuomas Tallinena, Jun Young Chungb, John S. Bigginsc, and L. Mahadevand,e,f,1 aDepartment of Physics and Nanoscience Center, University of Jyväskylä, FI-40014 Jyväskylä, Finland; bSchool of Engineering and Applied Sciences, Harvard University, Cambridge, MA 02138; cCavendish Laboratory, Cambridge University, Cambridge CB3 0HE, United Kingdom; dWyss Institute for Biologically Inspired Engineering, eKavli Institute for Bionano Science and Technology, and fSchool of Engineering and Applied Sciences, Department of Organismic and Evolutionary Biology, and Department of Physics, Harvard University, Cambridge, MA 02138 Edited* by John W. Hutchinson, Harvard University, Cambridge, MA, and approved July 15, 2014 (received for review April 1, 2014) The exterior of the mammalian brain—the cerebral cortex—has from an unregulated and unpatterned growth of the cortex rel- a conserved layered structure whose thickness varies little across ative to sublayers. species. However, selection pressures over evolutionary time scales Nevertheless, there is as yet no explicit biologically and physi- have led to cortices that have a large surface area to volume ratio in cally plausible model that can convincingly reproduce individual some organisms, with the result that the brain is strongly convo- sulci and gyri, let alone the complex patterns of sulci and gyri luted into sulci and gyri. Here we show that the gyrification can found in the brain. Early attempts to mechanically model brain arise as a nonlinear consequence of a simple mechanical instability folding (13) were rooted in the physics of wrinkling and assumed driven by tangential expansion of the gray matter constrained by a thin stiff layer of gray matter that grows relative to a thick soft the white matter. -
Advanced Morphometric Techniques Applied to The
UNIVERSIDAD POLITÉCNICA DE MADRID ESCUELA TÉCNICA SUPERIOR DE INGENIEROS DE TELECOMUNICACIÓN ADVANCED MORPHOMETRIC TECHNIQUES APPLIED TO THE STUDY OF HUMAN BRAIN ANATOMY TESIS DOCTORAL Yasser Alemán Gómez Ingeniero en Tecnologías Nucleares y Energéticas Máster en Neurociencias Madrid, 2015 DEPARTAMENTO DE INGENIERÍA ELECTRÓNICA ESCUELA TÉCNICA SUPERIOR DE INGENIEROS DE TELECOMUNICACIÓN PHD THESIS ADVANCED MORPHOMETRIC TECHNIQUES APPLIED TO THE STUDY OF HUMAN BRAIN ANATOMY AUTHOR Yasser Alemán Gómez Ing. en Tecnologías Nucleares y Energéticas MSc en Neurociencias ADVISOR Manuel Desco Menéndez, MScE, MD, PhD Madrid, 2015 Departamento de Ingeniería Electrónica Escuela Técnica Superior de Ingenieros de Telecomunicación Universidad Politécnica de Madrid Ph.D. Thesis Advanced morphometric techniques applied to the study of human brain anatomy Tesis doctoral Técnicas avanzadas de morfometría aplicadas al estudio de la anatomía cerebral humana Author: Yasser Alemán Gómez Advisor: Manuel Desco Menéndez Committee: Andrés Santos Lleó Universidad Politécnica de Madrid, Madrid, Spain Javier Pascau Gonzalez-Garzón Universidad Carlos III de Madrid, Madrid, Spain Raymond Salvador Civil FIDMAG – Germanes Hospitalàries, Barcelona, Spain Pablo Campo Martínez-Lage Universidad Autónoma de Madrid, Madrid, Spain Juan Domingo Gispert López Universidad Pompeu Fabra, Barcelona, Spain María Jesús Ledesma Carbayo Universidad Politécnica de Madrid, Madrid, Spain Juan José Vaquero López Universidad Carlos III de Madrid, Madrid, Spain Esta Tesis ha sido desarrollada en el Laboratorio de Imagen Médica de la Unidad de Medicina y Cirugía Experimental del Instituto de Investigación Sanitaria Gregorio Marañón y en colaboración con el Servicio de Psiquiatría del Niño y del Adolescente del Departamento de Psiquiatría del Hospital General Universitario Gregorio Marañón de Madrid, España. Tribunal nombrado por el Sr. -
Tool-Use and the Chimpanzee Brain: an Investigation of Gray and White Matter, and a Focused Study of Inferior Parietal Microstructure
Tool-use and the Chimpanzee Brain: An Investigation of Gray and White Matter, and a Focused Study of Inferior Parietal Microstructure by Laura Denise Reyes A.B. in Psychology, June 2008, Dartmouth College M.A. in Anthropology, May 2011, New Mexico State University M.Phil in Hominid Paleobiology, June 2013, The George Washington University A Dissertation submitted to The Faculty of The Columbian College of Arts and Sciences of The George Washington University in partial fulfillment of the requirements for the degree of Doctor of Philosophy August 31, 2017 Chet C. Sherwood Professor of Anthropology The Columbian College of Arts and Sciences of The George Washington University certifies that Laura D. Reyes has passed the Final Examination for the degree of Doctor of Philosophy as of May 3, 2017. This is the final and approved form of the dissertation. Tool-use and the Chimpanzee Brain: An Investigation of Gray and White Matter, and a Focused Study of Inferior Parietal Microstructure Laura Denise Reyes Dissertation Research Committee: Chet C. Sherwood, Professor of Anthropology, Dissertation Director Kimberley Phillips, Professor of Psychology, Trinity University, Committee Member Scott Mackey, Assistant Professor of Psychiatry, University of Vermont, Committee Member ii © Copyright 2017 by Laura Denise Reyes All rights reserved. iii Acknowledgments The author would like to thank her parents, Loretta and Francisco Reyes; her grandparents, Celia and Ralph Lopez and Paula and Francisco Reyes; and all of her family and friends who offered support during the course of her education, especially Amelia Villaseñor and Chrisandra Kufeldt. The author acknowledges the dissertation committee, Brenda Bradley (Chair), Chet Sherwood (Advisor), David Braun, Scott Mackey, Kimberley Phillips, and Sarah Shomstein, as well as the following funding sources: National Science Foundation Doctoral Dissertation Research Improvement Grant BCS-1455629 and GWU Provost’s Fellowship. -
Congenital Microcephaly
View metadata, citation and similar papers at core.ac.uk brought to you by CORE provided by Sussex Research Online American Journal of Medical Genetics Part C (Seminars in Medical Genetics) ARTICLE Congenital Microcephaly DIANA ALCANTARA AND MARK O'DRISCOLL* The underlying etiologies of genetic congenital microcephaly are complex and multifactorial. Recently, with the exponential growth in the identification and characterization of novel genetic causes of congenital microcephaly, there has been a consolidation and emergence of certain themes concerning underlying pathomechanisms. These include abnormal mitotic microtubule spindle structure, numerical and structural abnormalities of the centrosome, altered cilia function, impaired DNA repair, DNA Damage Response signaling and DNA replication, along with attenuated cell cycle checkpoint proficiency. Many of these processes are highly interconnected. Interestingly, a defect in a gene whose encoded protein has a canonical function in one of these processes can often have multiple impacts at the cellular level involving several of these pathways. Here, we overview the key pathomechanistic themes underlying profound congenital microcephaly, and emphasize their interconnected nature. © 2014 Wiley Periodicals, Inc. KEY WORDS: cell division; mitosis; DNA replication; cilia How to cite this article: Alcantara D, O'Driscoll M. 2014. Congenital microcephaly. Am J Med Genet Part C Semin Med Genet 9999:1–16. INTRODUCTION mid‐gestation although glial cell division formation of the various cortical layers. and consequent brain volume enlarge- Furthermore, differentiating and devel- Congenital microcephaly, an occipital‐ ment does continue after birth [Spalding oping neurons must migrate to their frontal circumference of equal to or less et al., 2005]. Impaired neurogenesis is defined locations to construct the com- than 2–3 standard deviations below the therefore most obviously reflected clini- plex architecture and laminar layered age‐related population mean, denotes cally as congenital microcephaly. -
S41598-019-48446-0[1]
Edinburgh Research Explorer Network analysis of canine brain morphometry links tumour risk to oestrogen deficiency and accelerated brain ageing Citation for published version: Rzechorzek, N, Saunders, O, Hiscox, L, Schwarz, T, Marioni-Henry, K, Argyle, D, Schoenebeck, J & Freeman, T 2019, 'Network analysis of canine brain morphometry links tumour risk to oestrogen deficiency and accelerated brain ageing', Scientific Reports. https://doi.org/10.1038/s41598-019-48446-0 Digital Object Identifier (DOI): 10.1038/s41598-019-48446-0 Link: Link to publication record in Edinburgh Research Explorer Document Version: Publisher's PDF, also known as Version of record Published In: Scientific Reports Publisher Rights Statement: Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. General rights Copyright for the publications made accessible via the Edinburgh Research Explorer is retained by the author(s) and / or other copyright owners and it is a condition of accessing these publications that users recognise and abide by the legal requirements associated with these rights. -
A Practical Introduction to Landmark-Based Geometric Morphometrics
A PRACTICAL INTRODUCTION TO LANDMARK-BASED GEOMETRIC MORPHOMETRICS MARK WEBSTER Department of the Geophysical Sciences, University of Chicago, 5734 South Ellis Avenue, Chicago, IL 60637 and H. DAVID SHEETS Department of Physics, Canisius College, 2001 Main Street, Buffalo, NY 14208 ABSTRACT.—Landmark-based geometric morphometrics is a powerful approach to quantifying biological shape, shape variation, and covariation of shape with other biotic or abiotic variables or factors. The resulting graphical representations of shape differences are visually appealing and intuitive. This paper serves as an introduction to common exploratory and confirmatory techniques in landmark-based geometric morphometrics. The issues most frequently faced by (paleo)biologists conducting studies of comparative morphology are covered. Acquisition of landmark and semilandmark data is discussed. There are several methods for superimposing landmark configu- rations, differing in how and in the degree to which among-configuration differences in location, scale, and size are removed. Partial Procrustes superimposition is the most widely used superimposition method and forms the basis for many subsequent operations in geometric morphometrics. Shape variation among superimposed con- figurations can be visualized as a scatter plot of landmark coordinates, as vectors of landmark displacement, as a thin-plate spline deformation grid, or through a principal components analysis of landmark coordinates or warp scores. The amount of difference in shape between two configurations can be quantified as the partial Procrustes distance; and shape variation within a sample can be quantified as the average partial Procrustes distance from the sample mean. Statistical testing of difference in mean shape between samples using warp scores as variables can be achieved through a standard Hotelling’s T2 test, MANOVA, or canonical variates analysis (CVA). -
Changes in Cerebral Morphology Consequent to Peripheral Autonomic Denervation
NeuroImage 18 (2003) 908–916 www.elsevier.com/locate/ynimg Changes in cerebral morphology consequent to peripheral autonomic denervation Hugo D. Critchley,a,b,* Catriona D. Good,a John Ashburner,a Richard S. Frackowiak,a Christopher J. Mathias,b,c and Raymond J. Dolana a Wellcome Department of Imaging Neuroscience, Institute of Neurology, UCL, 12 Queen Square, London WC1N 3BG, UK b Autonomic Unit, National Hospital for Neurology & Neurosurgery and Institute of Neurology, UCL, Queen Square, London WC1N 3BG, UK c Neurovascular Medicine Unit, St. Mary’s Hospital, ICSM, London W2 1NY, UK Received 14 June 2002; accepted 12 November 2002 Abstract Pure autonomic failure (PAF) is characterized by an acquired, selective, peripheral denervation of the autonomic nervous system. Patients with PAF fail to generate bodily states of arousal via the autonomic nervous system in response to physical or cognitive effort. We used voxel-based morphometry to test the hypothesis that changes in the morphology of brain regions involved in autonomic control would arise as a consequence to the longstanding absence of peripheral autonomic responses in PAF patients. Optimized voxel-based morphometry of structural magnetic resonance scans was used to test for regional differences in grey and white matter in 15 PAF patients and matched controls. There were no group differences observed in global measures of grey matter, white matter, or cerebrospinal fluid (CSF). We identified morphometric differences reflecting regional decreases in grey matter volume and concentration in anterior cingulate and insular cortices in PAF patients relative to controls. Morphometric differences in brainstem and subcortical regions did not reach statistical significance. -
Systematic Morphology of Fishes in the Early 21St Century
Copeia 103, No. 4, 2015, 858–873 When Tradition Meets Technology: Systematic Morphology of Fishes in the Early 21st Century Eric J. Hilton1, Nalani K. Schnell2, and Peter Konstantinidis1 Many of the primary groups of fishes currently recognized have been established through an iterative process of anatomical study and comparison of fishes that has spanned a time period approaching 500 years. In this paper we give a brief history of the systematic morphology of fishes, focusing on some of the individuals and their works from which we derive our own inspiration. We further discuss what is possible at this point in history in the anatomical study of fishes and speculate on the future of morphology used in the systematics of fishes. Beyond the collection of facts about the anatomy of fishes, morphology remains extremely relevant in the age of molecular data for at least three broad reasons: 1) new techniques for the preparation of specimens allow new data sources to be broadly compared; 2) past morphological analyses, as well as new ideas about interrelationships of fishes (based on both morphological and molecular data) provide rich sources of hypotheses to test with new morphological investigations; and 3) the use of morphological data is not limited to understanding phylogeny and evolution of fishes, but rather is of broad utility to understanding the general biology (including phenotypic adaptation, evolution, ecology, and conservation biology) of fishes. Although in some ways morphology struggles to compete with the lure of molecular data for systematic research, we see the anatomical study of fishes entering into a new and exciting phase of its history because of recent technological and methodological innovations. -
The Hominoid-Specific Gene TBC1D3 Promotes Generation of Basal Neural
1 The hominoid-specific gene TBC1D3 promotes generation of basal neural 2 progenitors and induces cortical folding in mice 3 4 Xiang-Chun Ju1,3,9, Qiong-Qiong Hou1,3,9, Ai-Li Sheng1, Kong-Yan Wu1, Yang Zhou8, 5 Ying Jin8, Tieqiao Wen7, Zhengang Yang6, Xiaoqun Wang2,5, Zhen-Ge Luo1,2,3,4 6 7 1Institute of Neuroscience, State Key Laboratory of Neuroscience, Shanghai Institutes for 8 Biological Sciences, Chinese Academy of Sciences, Shanghai, China. 9 2CAS Center for Excellence in Brain Science and Intelligence Technology, Shanghai, 10 China. 11 3Chinese Academy of Sciences University, Beijing, China. 12 4ShanghaiTech University, Shanghai, China 13 5Institute of Biophysics, Chinese Academy of Sciences, Beijing, China. 14 6Institutes of Brain Science, State Key Laboratory of Medical Neurobiology, Fudan 15 University, Shanghai, China. 16 7School of Life Sciences, Shanghai University, Shanghai, China. 17 8The Institute of Health Sciences, Shanghai Institutes for Biological Sciences, Chinese 18 Academy of Sciences, Shanghai, China. 19 9Co-first author 20 Correspondence should be addressed to Z.G.L ([email protected]) 21 22 Author contributions 23 X.-C.J and Q.-Q. H performed most experiments, analyzed data and wrote the paper. 24 A.-L.S helped with in situ hybridization. K.-Y.W assisted with imaging analysis. T.W 25 helped with the construction of nestin promoter construct. Y. Z and Y. J helped with 26 ReNeuron cell culture and analysis. Z.Y provided human fetal samples and assisted with 1 27 immunohistochemistry analysis. X.W provided help with live-imaging analysis. Z.-G.L 28 supervised the whole study, designed the research, analyzed data and wrote the paper. -
Comparative Anatomy and Functional Morphology University of California at Berkeley Department of Integrative Biology (5 Units)
Comparative Anatomy and Functional Morphology University of California at Berkeley Department of Integrative Biology (5 Units) Course Description: This course is an in-depth look at the biology of form and function. We will examine vertebrate anatomy to understand how structures develop, how they have evolved, and how they interact with one another to allow animals to live in a variety of environments. We will study the integration of the skeletal, muscular, nervous, vascular, respiratory, digestive, endocrine, and urogenital systems to explore the historical and present diversity of vertebrate animals. Format: This course will include lecture, discussion, and laboratory sessions. Lectures will focus primarily on broad concepts and ideas. Discussion sections will emphasize how to both read and analyze primary scientific literature. Laboratory sessions will allow students to physically explore the morphologies of a diversity of taxa and will include museum specimens as well as dissections of whole animals. Lecture: Monday, Tuesday, Wednesday, and Thursday, 9:30-11:00a.m. Discussion: Monday and Thursday, 11:00a.m. or 12:00p.m. Laboratory: Monday, Tuesday, Wednesday, and Thursday, 2:00-5:00p.m. All students must take lectures, discussion sections, and laboratory sections concurrently. Attendance of all sections is required. Goals: 1. A comparative approach will allow students to gain experience in identifying similarities and differences among taxa and further their understanding of how both evolutionary and environmental contexts influence the morphology and function. 2. Students will improve their ability to ask questions and answer them using scientific methodology. 3. Students will gain factual knowledge of terms and concepts regarding vertebrate anatomy and functional morphology. -
Brain Morphometry in 22Q11.2 Deletion Syndrome: an Exploration of Diferences in Cortical Thickness, Surface Area, and Their Contribution to Cortical Volume M
www.nature.com/scientificreports OPEN Brain morphometry in 22q11.2 deletion syndrome: an exploration of diferences in cortical thickness, surface area, and their contribution to cortical volume M. Gudbrandsen1, E. Daly1, C. M. Murphy1,2, C. E. Blackmore1,2, M. Rogdaki3,4, C. Mann5, A. Bletsch5, L. Kushan6, C. E. Bearden6,7, D. G. M. Murphy1, M. C. Craig1,8 & Christine Ecker1,5* 22q11.2 Deletion Syndrome (22q11.2DS) is the most common microdeletion in humans, with a heterogenous clinical presentation including medical, behavioural and psychiatric conditions. Previous neuroimaging studies examining the neuroanatomical underpinnings of 22q11.2DS show alterations in cortical volume (CV), cortical thickness (CT) and surface area (SA). The aim of this study was to identify (1) the spatially distributed networks of diferences in CT and SA in 22q11.2DS compared to controls, (2) their unique and spatial overlap, as well as (3) their relative contribution to observed diferences in CV. Structural MRI scans were obtained from 62 individuals with 22q11.2DS and 57 age- and-gender-matched controls (aged 6–31). Using FreeSurfer, we examined diferences in vertex-wise estimates of CV, CT and SA at each vertex, and compared the frequencies of vertices with a unique or overlapping diference for each morphometric feature. Our fndings indicate that CT and SA make both common and unique contributions to volumetric diferences in 22q11.2DS, and in some areas, their strong opposite efects mask diferences in CV. By identifying the neuroanatomic variability in 22q11.2DS, and the separate contributions of CT and SA, we can start exploring the shared and distinct mechanisms that mediate neuropsychiatric symptoms across disorders, e.g. -
Bacterial Size, Shape and Arrangement & Cell Structure And
Lecture 13, 14 and 15: bacterial size, shape and arrangement & Cell structure and components of bacteria and Functional anatomy and reproduction in bacteria Bacterial size, shape and arrangement Bacteria are prokaryotic, unicellular microorganisms, which lack chlorophyll pigments. The cell structure is simpler than that of other organisms as there is no nucleus or membrane bound organelles.Due to the presence of a rigid cell wall, bacteria maintain a definite shape, though they vary as shape, size and structure. When viewed under light microscope, most bacteria appear in variations of three major shapes: the rod (bacillus), the sphere (coccus) and the spiral type (vibrio). In fact, structure of bacteria has two aspects, arrangement and shape. So far as the arrangement is concerned, it may Paired (diplo), Grape-like clusters (staphylo) or Chains (strepto). In shape they may principally be Rods (bacilli), Spheres (cocci), and Spirals (spirillum). Size of Bacterial Cell The average diameter of spherical bacteria is 0.5- 2.0 µm. For rod-shaped or filamentous bacteria, length is 1-10 µm and diameter is 0.25-1 .0 µm. E. coli , a bacillus of about average size is 1.1 to 1.5 µm wide by 2.0 to 6.0 µm long. Spirochaetes occasionally reach 500 µm in length and the cyanobacterium Accepted wisdom is that bacteria are smaller than eukaryotes. But certain cyanobacteria are quite large; Oscillatoria cells are 7 micrometers diameter. The bacterium, Epulosiscium fishelsoni , can be seen with the naked eye (600 mm long by 80 mm in diameter). One group of bacteria, called the Mycoplasmas, have individuals with size much smaller than these dimensions.