Slime Molds: Bryophyte Associations
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Lehman Caves Management Plan
National Park Service U.S. Department of the Interior Great Basin National Park Lehman Caves Management Plan June 2019 ON THE COVER Photograph of visitors on tour of Lehman Caves NPS Photo ON THIS PAGE Photograph of cave shields, Grand Palace, Lehman Caves NPS Photo Shields in the Grand Palace, Lehman Caves. Lehman Caves Management Plan Great Basin National Park Baker, Nevada June 2019 Approved by: James Woolsey, Superintendent Date Executive Summary The Lehman Caves Management Plan (LCMP) guides management for Lehman Caves, located within Great Basin National Park (GRBA). The primary goal of the Lehman Caves Management Plan is to manage the cave in a manner that will preserve and protect cave resources and processes while allowing for respectful recreation and scientific use. More specifically, the intent of this plan is to manage Lehman Caves to maintain its geological, scenic, educational, cultural, biological, hydrological, paleontological, and recreational resources in accordance with applicable laws, regulations, and current guidelines such as the Federal Cave Resource Protection Act and National Park Service Management Policies. Section 1.0 provides an introduction and background to the park and pertinent laws and regulations. Section 2.0 goes into detail of the natural and cultural history of Lehman Caves. This history includes how infrastructure was built up in the cave to allow visitors to enter and tour, as well as visitation numbers from the 1920s to present. Section 3.0 states the management direction and objectives for Lehman Caves. Section 4.0 covers how the Management Plan will meet each of the objectives in Section 3.0. -
Protozoologica Special Issue: Protists in Soil Processes
Acta Protozool. (2012) 51: 201–208 http://www.eko.uj.edu.pl/ap ActA doi:10.4467/16890027AP.12.016.0762 Protozoologica Special issue: Protists in Soil Processes Review paper Ecology of Soil Eumycetozoans Steven L. STEPHENSON1 and Alan FEEST2 1Department of Biological Sciences, University of Arkansas, Fayetteville, Arkansas, USA; 2Institute of Advanced Studies, University of Bristol and Ecosulis ltd., Newton St Loe, Bath, United Kingdom Abstract. Eumycetozoans, commonly referred to as slime moulds, are common to abundant organisms in soils. Three groups of slime moulds (myxogastrids, dictyostelids and protostelids) are recognized, and the first two of these are among the most important bacterivores in the soil microhabitat. The purpose of this paper is first to provide a brief description of all three groups and then to review what is known about their distribution and ecology in soils. Key words: Amoebae, bacterivores, dictyostelids, myxogastrids, protostelids. INTRODUCTION that they are amoebozoans and not fungi (Bapteste et al. 2002, Yoon et al. 2008, Baudalf 2008). Three groups of slime moulds (myxogastrids, dic- One of the idiosyncratic branches of the eukary- tyostelids and protostelids) are recognized (Olive 1970, otic tree of life consists of an assemblage of amoe- 1975). Members of the three groups exhibit consider- boid protists referred to as the supergroup Amoebozoa able diversity in the type of aerial spore-bearing struc- (Fiore-Donno et al. 2010). The most diverse members tures produced, which can range from exceedingly of the Amoebozoa are the eumycetozoans, common- small examples (most protostelids) with only a single ly referred to as slime moulds. Since their discovery, spore to the very largest examples (certain myxogas- slime moulds have been variously classified as plants, trids) that contain many millions of spores. -
Comparative Genomics of the Social Amoebae Dictyostelium Discoideum
Sucgang et al. Genome Biology 2011, 12:R20 http://genomebiology.com/2011/12/2/R20 RESEARCH Open Access Comparative genomics of the social amoebae Dictyostelium discoideum and Dictyostelium purpureum Richard Sucgang1†, Alan Kuo2†, Xiangjun Tian3†, William Salerno1†, Anup Parikh4, Christa L Feasley5, Eileen Dalin2, Hank Tu2, Eryong Huang4, Kerrie Barry2, Erika Lindquist2, Harris Shapiro2, David Bruce2, Jeremy Schmutz2, Asaf Salamov2, Petra Fey6, Pascale Gaudet6, Christophe Anjard7, M Madan Babu8, Siddhartha Basu6, Yulia Bushmanova6, Hanke van der Wel5, Mariko Katoh-Kurasawa4, Christopher Dinh1, Pedro M Coutinho9, Tamao Saito10, Marek Elias11, Pauline Schaap12, Robert R Kay8, Bernard Henrissat9, Ludwig Eichinger13, Francisco Rivero14, Nicholas H Putnam3, Christopher M West5, William F Loomis7, Rex L Chisholm6, Gad Shaulsky3,4, Joan E Strassmann3, David C Queller3, Adam Kuspa1,3,4* and Igor V Grigoriev2 Abstract Background: The social amoebae (Dictyostelia) are a diverse group of Amoebozoa that achieve multicellularity by aggregation and undergo morphogenesis into fruiting bodies with terminally differentiated spores and stalk cells. There are four groups of dictyostelids, with the most derived being a group that contains the model species Dictyostelium discoideum. Results: We have produced a draft genome sequence of another group dictyostelid, Dictyostelium purpureum, and compare it to the D. discoideum genome. The assembly (8.41 × coverage) comprises 799 scaffolds totaling 33.0 Mb, comparable to the D. discoideum genome size. Sequence comparisons suggest that these two dictyostelids shared a common ancestor approximately 400 million years ago. In spite of this divergence, most orthologs reside in small clusters of conserved synteny. Comparative analyses revealed a core set of orthologous genes that illuminate dictyostelid physiology, as well as differences in gene family content. -
Myxomycetes NMW 2012Orange, Updated KS 2017.Docx
Myxomycete (Slime Mould) Collection Amgueddfa Cymru-National Museum Wales (NMW) Alan Orange (2012), updated by Katherine Slade (2017) Myxomycetes (true or plasmodial slime moulds) belong to the Eumycetozoa, within the Amoebozoa, a group of eukaryotes that are basal to a clade containing animals and fungi. Thus although they have traditionally been studied by mycologists they are distant from the true fungi. Arrangement & Nomenclature Slime Mould specimens in NMW are arranged in alphabetical order of the currently accepted name (as of 2012). Names used on specimen packets that are now synonyms are cross referenced in the list below. The collection currently contains 157 Myxomycete species. Specimens are mostly from Britain, with a few from other parts of Europe or from North America. The current standard work for identification of the British species is: Ing, B. 1999. The Myxomycetes of Britain and Ireland. An Identification Handbook. Slough: Richmond Publishing Co. Ltd. Nomenclature follows the online database of Slime Mould names at www.eumycetozoa.com (accessed 2012). This database is largely in line with Ing (1999). Preservation The feeding stage is a multinucleate motile mass known as a plasmodium. The fruiting stage is a dry, fungus-like structure containing abundant spores. Mature fruiting bodies of Myxomycetes can be collected and dried, and with few exceptions (such as Ceratiomyxa) they preserve well. Plasmodia cannot be preserved, but it is useful to record the colour if possible. Semi-mature fruiting bodies may continue to mature if collected with the substrate and kept in a cool moist chamber. Collected plasmodia are unlikely to fruit. Specimens are stored in boxes to prevent crushing; labels should not be allowed to touch the specimen. -
A Revised Classification of Naked Lobose Amoebae (Amoebozoa
Protist, Vol. 162, 545–570, October 2011 http://www.elsevier.de/protis Published online date 28 July 2011 PROTIST NEWS A Revised Classification of Naked Lobose Amoebae (Amoebozoa: Lobosa) Introduction together constitute the amoebozoan subphy- lum Lobosa, which never have cilia or flagella, Molecular evidence and an associated reevaluation whereas Variosea (as here revised) together with of morphology have recently considerably revised Mycetozoa and Archamoebea are now grouped our views on relationships among the higher-level as the subphylum Conosa, whose constituent groups of amoebae. First of all, establishing the lineages either have cilia or flagella or have lost phylum Amoebozoa grouped all lobose amoe- them secondarily (Cavalier-Smith 1998, 2009). boid protists, whether naked or testate, aerobic Figure 1 is a schematic tree showing amoebozoan or anaerobic, with the Mycetozoa and Archamoe- relationships deduced from both morphology and bea (Cavalier-Smith 1998), and separated them DNA sequences. from both the heterolobosean amoebae (Page and The first attempt to construct a congruent molec- Blanton 1985), now belonging in the phylum Per- ular and morphological system of Amoebozoa by colozoa - Cavalier-Smith and Nikolaev (2008), and Cavalier-Smith et al. (2004) was limited by the the filose amoebae that belong in other phyla lack of molecular data for many amoeboid taxa, (notably Cercozoa: Bass et al. 2009a; Howe et al. which were therefore classified solely on morpho- 2011). logical evidence. Smirnov et al. (2005) suggested The phylum Amoebozoa consists of naked and another system for naked lobose amoebae only; testate lobose amoebae (e.g. Amoeba, Vannella, this left taxa with no molecular data incertae sedis, Hartmannella, Acanthamoeba, Arcella, Difflugia), which limited its utility. -
A Survey of Myxomycetes from the Black Hills of South Dakota and the Bear Lodge Mountains of Wyoming
Proceedings of the South Dakota Academy of Science, Vol. 89 (2010) 45 A SURVEY OF MYXOMYCETES FROM THE BLACK HILLS OF SOUTH DAKOTA AND THE BEAR LODGE MOUNTAINS OF WYOMING A. Gabel1*, E. Ebbert2, M. Gabel1 and L. Zierer2 1Biology Department Black Hills State University 1200 University Spearfish, South Dakota 57799 2Deceased *[email protected] ABSTRACT Fruiting bodies of slime molds were collected intermittently from the field from 1990-2009. During the summers of 2007-2009 slime molds also were cultured in moist chambers from downed, decaying wood, dried deciduous leaf litter, and dried grass litter that was gathered three times each summer from four areas at each of the following six sites. Alabaugh Canyon and Boles/Redbird Canyons were dry, prairie/woodlands in Fall River and Custer Counties in the southern Black Hills. Pony Gulch and Spring Creek, in the central hills were moist, broad gulches in Pennington County, and the northern hills sites were Botany Bay and Grigg’s Gulch, narrow, moist canyons in Lawrence County. Contents of a total of 648 cultures were examined. Presence of a species in a culture was considered to be a collection and some cultures contained more than one species. Eighty-two species from both field and culture surveys were identified, and 62 are considered as new records for the Black Hills, and 61 for western South Dakota. Six hundred fifty-seven collections representing 65 spe- cies developed in culture included species from all orders of Myxomycetes. Only five species occurred at a relative abundance > 5% and 20 occurred only once. -
Methods Useful in Bringing Field Collections Of
1. USEFUL METHODS FOR BRINGING FIELD COLLECTIONS 1 OF MYXOMYCETES INTO AGAR CULTURE Rationale for getting a wide range of Myxomycetes into agar culture. Although Physarum and Didymium (Aldrich and Daniel, 1982) have served as excellent model systems for study, they give only a partial view of the biology of the Myxomycetes. There is a pressing need to get a wide range of Myxomycetes into agar culture to be used in the instruction of high school, undergraduate, graduate and post-graduate students as well as to provide material for student research projects. Further, these cultures will serve as primary research organisms in laboratories around the world. As Prof. Spiegel has noted, “Chemical sequences derived from a diversity of authentic cultures will make it easier for molecular systematists to build phylogenies. Also, such sequences when derived from cultures representing a wide taxonomic range, will make it easier to recognize myxomycete “chemical signatures” so that we can more confidently use sequences from species that will not go into culture. For those cultures that can be induced to go spore to spore, it will be possible for developmental geneticists to track changes in gene expression and to compare the patterns of gene expression across the Myxomycetes and with other organisms. Also sporulating cultures will allow the design of a range of experiments to determine the stability (phenotypic plasticity) of characters in the sporophore.” Since only morphological features of the sporophores are currently used to identify Myxomycetes, it behooves us to fully understand character variability under different culture conditions. 1 An overview of these methods is published in Haskins and Wrigley de Basanta (2008). -
A Study of Taxonomy and Distributions of Genus Stemonitis(Myxomycetes)
四天王寺国際仏教大学紀要 第45号(2008年 3 月) A Study of Taxonomy and Distributions of Genus Stemonitis(Myxomycetes) Takami HATANO (平成19年 9 月25日受理 最終原稿平成19年12月10日受理) The author has collected Myxomycetes in Japan and foreign countries for 40 years from 1967 to 2006, and studied taxonomically about 600 specimens of 12 species belong to the Genus Stemonitis in this study. This result is very important to discuss in a taxonomical and a morphological point. It is also mentioned localities in Japan and World distribution of these species. This result is very important to make clear the distribution of Myxomycetes in an ecological point. It is proposed following some new findings in taxonomical and distributional points in this study. Sporangia of S. axifera and some species are crowded and sporangia of S. pallida and a few species are solitary or gregarious in its occurrence. The size of a sporangium of 12 species is 0.3-0.7mm in diameter, 4-10mm in height. A stalk is 0.9- 3.0mm in length, a mesh of capillitial threads is 12-42μm in diameter. The color of sporangium has two types. One is light brown as S. axifera, the other one is black or ferruginous as S. fusca. The spore shape of 12 speices is globose, 6-9μm in average diameter. The surface pattern of a spore has three types of warted, spiny and reticulated. It made clear the collection localities in Japan and some foreign countries. S. fusca and some species are commonly developed and S. herbatica and some speices are rarely developed. It also made the arrangement of the world distribution from the representative literatures. -
Myxomycetes of Taiwan XXV. the Family Stemonitaceae
Taiwania, 59(3): 210‒219, 2014 DOI: 10.6165/tai.2014.59.210 RESEARCH ARTICLE Myxomycetes of Taiwan XXV. The Family Stemonitaceae Chin-Hui Liu* and Jong-How Chang Institute of Plant Science, National Taiwan University, Taipei, Taiwan 106, R.O.C. * Corresponding author. Email: [email protected] (Manuscript received 22 February 2014; accepted 30 May 2014) ABSTRACT: Species of ten genera of Stemonitaceae, including Collaria, Comatricha, Enerthenema, Lamproderma, Macbrideola, Paradiacheopsis, Stemonaria, Stemonitis, Stemonitopsis, and Symphytocarpus, collected from Taiwan are critically revised. Of the 42 species recorded, Enerthenema intermedium and Stemonitopsis subcaespitosa are new to Taiwan, thus are described and illustrated in this paper. Keys to the species of all genera, and to the genera of the family are also provided. KEY WORDS: Myxomycetes, Stemonitaceae, Taiwan, taxonomy. INTRODUCTION 4’. Fruiting body more than 0.5 mm tall; sporangia cylindrical …..... 5 5. Outermost branches of capillitium united to form a delicate, complete surface net ………………………...…………. Stemonitis The family Stemonitaceae is a monotypic family of 5’. No surface net ………………………………………... Stemonaria the order Stemonitales. It contains 16 genera and 202 6. Peridium persistent, usually iridescent …………….. Lamproderma species in the world (Lado, 2005–2013). In this paper 6’. Peridium disappearing in mature fruiting bodies, at most leaving a collar or a few flakes ……………………………………………... 7 we present a list of 40 taxa including their ecological 7. Capillitium sparse, not anastomosing, with few branches ………… data compiled from the previous records of this family …………………………………………..……….. Paradiacheopsis in Taiwan and 2 new records of Taiwan, Enerthenema 7’. Capillitium usually abundant, anastomosing ……………….....… 8 intermedium and Stemonitopsis subcaespitosa. 8. Surface net of capillitium present, over at least the lower portion; sporangia cylindrical ……………………………….. -
Yüzüncü Yıl Üniversitesi Fen Bilimleri Enstitüsü Dergisi
Yüzüncü Yıl ÜniversitesiFen Bilimleri Enstitüsü Dergisi Cilt 26, Sayı 1 (Nisan), 1-10, 2021 Yüzüncü Yıl Üniversitesi Fen Bilimleri Enstitüsü Dergisi http://dergipark.gov.tr/yyufbed Research Article (Araştırma Makalesi) Myxomycetes Growing on Culture Logs Pleurotus ostreatus (Jacq.) P. Kumm. and Lentinula edodes (Berk.) Pegler Gönül EROĞLU*1, Sinan ALKAN2, Gıyasettin KAŞIK1 1Selçuk University, Faculty of Science, Department of Biology, 42130, Konya, Turkey 2Selçuk University, Çumra School of Applied Sciences, Organic Agriculture Administration Department, 42500, Konya, Turkey Gönül EROĞLU, ORCID No: 0000-0001-6323-2077, Sinan ALKAN, ORCID No: 0000-0001-7725-1957, Gıyasettin KAŞIK, ORCID No: 0000-0001-8304-6554 *Corresponding author e-mail: [email protected] Article Info Abstract: In this study, it was aimed to identify myxomycetes that develop on natural and synthetic logs used in culture mushroom cultivation. For this study, the logs brought Received: 17.07.2020 from three different regions (Sızma village-Konya, Hadim-Konya, Yenice-Karabük) in Accepted: 22.02.2021 2015 and the synthetic logs were applied the procedure required for culture mushroom Published April 2021 cultivation and then the spawn of Pleurotus ostreatus (Jacq.) P. Kumm. and Lentinula DOI: edodes (Berk.) Pegler were inoculated to the logs. The inoculated logs were taken to the Keywords mushroom growing room where climatic conditions such as humidity, temperature and Cultivated mushroom, lighting were provided automatically. While checking the growth of the cultivated Myxomycetes, fungi, it was observed that the myxomycetes plasmodium and sporocarp also developed Moist chamber culture on the culture logs. Myxomycetes develop on organic plant debris, which is their natural environment, and are also developed in the laboratory using the moist chamber technique. -
The Occurrence of Myxomycetes on Different Decay Stages of Trunks of Picea Abies, Pinus Sylvestris and Betula Spp. in a Small Oldgrowth Forest in Southern Finland
Karstenia 42: 13- 22, 2002 The occurrence of myxomycetes on different decay stages of trunks of Picea abies, Pinus sylvestris and Betula spp. in a small oldgrowth forest in southern Finland TARJA UKKOLA UKKOLA, T. 2002: The occurrence of myxomycetes on different decay stages of trunks of Picea abies, Pinus sylvestris and Betula spp. in a small oldgrowth forest in southern Finland. - Karstenia 42: 13- 22. Helsinki. ISSN 0453-3402. The occurrence of myxomycetes was studied on fallen trunks of Picea abies, Pinus sylvestris, and Betula spp. (B. pendula and B. pubescens) in a small oldgrowth forest in southern Finland in May 1998 - September 1999. The study site is located in Luukkaa Recreation Area, and was left in pristine state in 1966. The sample trunks were chosen to represent different stages of decomposition and checked every second or fourth > eek in all for 17 times. A total of 325 myxomycete specimens representing 44 taxa in 16 genera were observed. Four taxa, Comatricha pulchella var. fusca, Lycogala exiguum, Licea cf. pus ilia, and Physarum bethelii are new records to Finland. During the study, myxomycetes were most abundant on decomposing trunks of Betula spp. (123 specimens), especially on well-decayed trunks. The species diversity was about the same on all studied tree species: 27 taxa were recorded on P abies and P sylvestris, and 22 on Betula spp. The largest di ersity was on two pine trunks with fairly soft wood (a total of 19 taxa). The common myxomycetes, Ceratiomyxa fruticulosa and Lycogala epidendrum, represent generalists in this study, being abundant and present at nearly all decay stages of all studied tree species. -
Slime Moulds
Queen’s University Biological Station Species List: Slime Molds The current list has been compiled by Richard Aaron, a naturalist and educator from Toronto, who has been running the Fabulous Fall Fungi workshop at QUBS between 2009 and 2019. Dr. Ivy Schoepf, QUBS Research Coordinator, edited the list in 2020 to include full taxonomy and information regarding species’ status using resources from The Natural Heritage Information Centre (April 2018) and The IUCN Red List of Threatened Species (February 2018); iNaturalist and GBIF. Contact Ivy to report any errors, omissions and/or new sightings. Based on the aforementioned criteria we can expect to find a total of 33 species of slime molds (kingdom: Protozoa, phylum: Mycetozoa) present at QUBS. Species are Figure 1. One of the most commonly encountered reported using their full taxonomy; common slime mold at QUBS is the Dog Vomit Slime Mold (Fuligo septica). Slime molds are unique in the way name and status, based on whether the species is that they do not have cell walls. Unlike fungi, they of global or provincial concern (see Table 1 for also phagocytose their food before they digest it. details). All species are considered QUBS Photo courtesy of Mark Conboy. residents unless otherwise stated. Table 1. Status classification reported for the amphibians of QUBS. Global status based on IUCN Red List of Threatened Species rankings. Provincial status based on Ontario Natural Heritage Information Centre SRank. Global Status Provincial Status Extinct (EX) Presumed Extirpated (SX) Extinct in the