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Biodiversity of Plasmodial Slime Moulds (Myxogastria): Measurement and Interpretation
Protistology 1 (4), 161–178 (2000) Protistology August, 2000 Biodiversity of plasmodial slime moulds (Myxogastria): measurement and interpretation Yuri K. Novozhilova, Martin Schnittlerb, InnaV. Zemlianskaiac and Konstantin A. Fefelovd a V.L.Komarov Botanical Institute of the Russian Academy of Sciences, St. Petersburg, Russia, b Fairmont State College, Fairmont, West Virginia, U.S.A., c Volgograd Medical Academy, Department of Pharmacology and Botany, Volgograd, Russia, d Ural State University, Department of Botany, Yekaterinburg, Russia Summary For myxomycetes the understanding of their diversity and of their ecological function remains underdeveloped. Various problems in recording myxomycetes and analysis of their diversity are discussed by the examples taken from tundra, boreal, and arid areas of Russia and Kazakhstan. Recent advances in inventory of some regions of these areas are summarised. A rapid technique of moist chamber cultures can be used to obtain quantitative estimates of myxomycete species diversity and species abundance. Substrate sampling and species isolation by the moist chamber technique are indispensable for myxomycete inventory, measurement of species richness, and species abundance. General principles for the analysis of myxomycete diversity are discussed. Key words: slime moulds, Mycetozoa, Myxomycetes, biodiversity, ecology, distribu- tion, habitats Introduction decay (Madelin, 1984). The life cycle of myxomycetes includes two trophic stages: uninucleate myxoflagellates General patterns of community structure of terrestrial or amoebae, and a multi-nucleate plasmodium (Fig. 1). macro-organisms (plants, animals, and macrofungi) are The entire plasmodium turns almost all into fruit bodies, well known. Some mathematics methods are used for their called sporocarps (sporangia, aethalia, pseudoaethalia, or studying, from which the most popular are the quantita- plasmodiocarps). -
Slime Molds: Biology and Diversity
Glime, J. M. 2019. Slime Molds: Biology and Diversity. Chapt. 3-1. In: Glime, J. M. Bryophyte Ecology. Volume 2. Bryological 3-1-1 Interaction. Ebook sponsored by Michigan Technological University and the International Association of Bryologists. Last updated 18 July 2020 and available at <https://digitalcommons.mtu.edu/bryophyte-ecology/>. CHAPTER 3-1 SLIME MOLDS: BIOLOGY AND DIVERSITY TABLE OF CONTENTS What are Slime Molds? ....................................................................................................................................... 3-1-2 Identification Difficulties ...................................................................................................................................... 3-1- Reproduction and Colonization ........................................................................................................................... 3-1-5 General Life Cycle ....................................................................................................................................... 3-1-6 Seasonal Changes ......................................................................................................................................... 3-1-7 Environmental Stimuli ............................................................................................................................... 3-1-13 Light .................................................................................................................................................... 3-1-13 pH and Volatile Substances -
Arcyria Cinerea (Bull.) Pers
Myxomycete diversity of the Altay Mountains (southwestern Siberia, Russia) 1* 2 YURI K. NOVOZHILOV , MARTIN SCHNITTLER , 3 4 ANASTASIA V. VLASENKO & KONSTANTIN A. FEFELOV *[email protected] 1,3V.L. Komarov Botanical Institute of the Russian Academy of Sciences 197376 St. Petersburg, Russia, 2Institute of Botany and Landscape Ecology, Ernst-Moritz-Arndt University D-17487 Greifswald, Germany, 4Institute of Plant and Animal Ecology of the Russian Academy of Sciences Ural Division, 620144 Yekaterinburg, Russia Abstract ― A survey of 1488 records of myxomycetes found within a mountain taiga-dry steppe vegetation gradient has identified 161 species and 41 genera from the southeastern Altay mountains and adjacent territories of the high Ob’ river basin. Of these, 130 species were seen or collected in the field and 59 species were recorded from moist chamber cultures. Data analysis based on the species accumulation curve estimates that 75–83% of the total species richness has been recorded, among which 118 species are classified as rare (frequency < 0.5%) and 7 species as abundant (> 3% of all records). Among the 120 first species records for the Altay Mts. are 6 new records for Russia. The southeastern Altay taiga community assemblages appear highly similar to other taiga regions in Siberia but differ considerably from those documented from arid regions. The complete and comprehensive illustrated report is available at http://www.Mycotaxon.com/resources/weblists.html. Key words ― biodiversity, ecology, slime moulds Introduction Although we have a solid knowledge about the myxomycete diversity of coniferous boreal forests of the European part of Russia (Novozhilov 1980, 1999, Novozhilov & Fefelov 2001, Novozhilov & Lebedev 2006, Novozhilov & Schnittler 1997, Schnittler & Novozhilov 1996) the species associated with this vegetation type in Siberia are poorly studied. -
Some Critically Endangered Species from Turkey
Fungal Conservation issue 4: February 2014 Fungal Conservation Note from the Editor This issue of Fungal Conservation is being put together in the glow of achievement associated with the Third International Congress on Fungal Conservation, held in Muğla, Turkey in November 2013. The meeting brought together people committed to fungal conservation from all corners of the Earth, providing information, stimulation, encouragement and general happiness that our work is starting to bear fruit. Especial thanks to our hosts at the University of Muğla who did so much behind the scenes to make the conference a success. This issue of Fungal Conservation includes an account of the meeting, and several papers based on presentations therein. A major development in the world of fungal conservation happened late last year with the launch of a new website (http://iucn.ekoo.se/en/iucn/welcome) for the Global Fungal Red Data List Initiative. This is supported by the Mohamed bin Zayed Species Conservation Fund, which also made a most generous donation to support participants from less-developed nations at our conference. The website provides a user-friendly interface to carry out IUCN-compliant conservation assessments, and should be a tool that all of us use. There is more information further on in this issue of Fungal Conservation. Deadlines are looming for the 10th International Mycological Congress in Thailand in August 2014 (see http://imc10.com/2014/home.html). Conservation issues will be featured in several of the symposia, with one of particular relevance entitled "Conservation of fungi: essential components of the global ecosystem”. There will be room for a limited number of contributed papers and posters will be very welcome also: the deadline for submitting abstracts is 31 March. -
Towards a Phylogenetic Classification of the Myxomycetes
Phytotaxa 399 (3): 209–238 ISSN 1179-3155 (print edition) https://www.mapress.com/j/pt/ PHYTOTAXA Copyright © 2019 Magnolia Press Article ISSN 1179-3163 (online edition) https://doi.org/10.11646/phytotaxa.399.3.5 Towards a phylogenetic classification of the Myxomycetes DMITRY V. LEONTYEV1*¶, MARTIN SCHNITTLER2¶, STEVEN L. STEPHENSON3, YURI K. NOVOZHILOV4 & OLEG N. SHCHEPIN4 1Department of Botany, H.S. Skovoroda Kharkiv National Pedagogical University, Valentynivska 2, Kharkiv 61168 Ukraine. 2Institute of Botany and Landscape Ecology, Ernst Moritz Arndt University Greifswald, Soldmannstr. 15, Greifswald 17487, Germany. 3Department of Biological Sciences, University of Arkansas, Fayetteville, Arkansas 72701, USA. 4Laboratory of Systematics and Geography of Fungi, The Komarov Botanical Institute of the Russian Academy of Sciences, Prof. Popov Street 2, 197376 St. Petersburg, Russia. * Corresponding author E-mail: [email protected] ¶ These authors contributed equally to this work. In memoriam Irina O. Dudka Abstract The traditional classification of the Myxomycetes (Myxogastrea) into five orders (Echinosteliales, Liceales, Trichiales, Stemonitidales and Physarales), used in all monographs published since 1945, does not properly reflect evolutionary re- lationships within the group. Reviewing all published phylogenies for myxomycete subgroups together with a 18S rDNA phylogeny of the entire group serving as an illustration, we suggest a revised hierarchical classification, in which taxa of higher ranks are formally named according to the International Code of Nomenclature for algae, fungi and plants. In addition, informal zoological names are provided. The exosporous genus Ceratiomyxa, together with some protosteloid amoebae, constitute the class Ceratiomyxomycetes. The class Myxomycetes is divided into a bright- and a dark-spored clade, now formally named as subclasses Lucisporomycetidae and Columellomycetidae, respectively. -
Dissertation
DISSERTATION Titel der Dissertation Molecular Phylogeny and Taxonomy of the Physarum notabile Species Complex (Myxomycetes) Verfasser Mikhail Okun angestrebter akademischer Grad Doctor of Philosophy (PhD) Wien, 2014 Studienkennzahl lt. A 094 490 Studienblatt: Dissertationsgebiet lt. Molekulare Biologie Studienblatt: Betreut von: Univ.-Prof. Dr. Arndt von Haeseler 2 Abstract Im Gegensatz zu Tieren und Pflanzen sind die Modelle der Verbreitung von mikroskopischen Organismen eher schlecht erforscht. Der Grund dafür sind ihre geringe Größe und bestimmte Merkmale des Lebenszyklus. Zur selben Zeit trägt die geringe Größe zusammen mit der hohen ökologischen Toleranz zur weltweiten Verbreitung der Mikroorganismen bei. In letzter Zeit wurden die Modelle des Kosmopolitismus (Fenchel, 2005; Fenchel, Finlay, 2004; Finlay, Fenchel, 2004) sowie des „Moderate Endemism“ (Foissner, 2006) im Bezug auf Mikroorganismen öfters diskutiert (Fontaneto, 2011; Martiny et al., 2006). Um diese Fragen genauer zu studieren, sind Modell-Mikroorganismen benötigt, die leicht im Feld sowohl auch im Labor identifiziert werden. Eine solcher Gruppen sind die Myxomyceten (Eumycetozoa). Die Gruppe beinhaltet ca. 1000 Spezies in 5 Ordnungen (Martin, Alexopoulos, 1969; Olive, 1975). Als aktive Bakteriophagen sind Myxomyceten wichtige Regulatoren der bakteriellen Biota in Böden. Die Erforschung der Phylogenie der Myxomyceten trägt dazu bei, die evolutionäre Geschichte der Protisten besser zu verstehen (Adl et al., 2012). Bis vor kurzem basierte das taxonomische System der Myxomyceten fast ausschließlich auf den morphologischen Eigenschaften der Fruchtkörper (Sporokarpen) (Martin, Alexopoulos, 1969; Schnittler et al., 2012) und das morphologische Spezies-Konzept wurde überwiegend benutzt. Erst im letzten Jahrzehnt wurden die Ergebnisse von molekularen Studien an Myxomyceten veröffentlicht (Fiore-Donno et al., 2008). Dennoch ist das taxonomische System der Myxomyceten sehr unstabil (Schnittler et al., 2012). -
Revisions to the Classification, Nomenclature, and Diversity of Eukaryotes
PROF. SINA ADL (Orcid ID : 0000-0001-6324-6065) PROF. DAVID BASS (Orcid ID : 0000-0002-9883-7823) DR. CÉDRIC BERNEY (Orcid ID : 0000-0001-8689-9907) DR. PACO CÁRDENAS (Orcid ID : 0000-0003-4045-6718) DR. IVAN CEPICKA (Orcid ID : 0000-0002-4322-0754) DR. MICAH DUNTHORN (Orcid ID : 0000-0003-1376-4109) PROF. BENTE EDVARDSEN (Orcid ID : 0000-0002-6806-4807) DR. DENIS H. LYNN (Orcid ID : 0000-0002-1554-7792) DR. EDWARD A.D MITCHELL (Orcid ID : 0000-0003-0358-506X) PROF. JONG SOO PARK (Orcid ID : 0000-0001-6253-5199) DR. GUIFRÉ TORRUELLA (Orcid ID : 0000-0002-6534-4758) Article DR. VASILY V. ZLATOGURSKY (Orcid ID : 0000-0002-2688-3900) Article type : Original Article Corresponding author mail id: [email protected] Adl et al.---Classification of Eukaryotes Revisions to the Classification, Nomenclature, and Diversity of Eukaryotes Sina M. Adla, David Bassb,c, Christopher E. Laned, Julius Lukeše,f, Conrad L. Schochg, Alexey Smirnovh, Sabine Agathai, Cedric Berneyj, Matthew W. Brownk,l, Fabien Burkim, Paco Cárdenasn, Ivan Čepičkao, Ludmila Chistyakovap, Javier del Campoq, Micah Dunthornr,s, Bente Edvardsent, Yana Eglitu, Laure Guillouv, Vladimír Hamplw, Aaron A. Heissx, Mona Hoppenrathy, Timothy Y. Jamesz, Sergey Karpovh, Eunsoo Kimx, Martin Koliskoe, Alexander Kudryavtsevh,aa, Daniel J. G. Lahrab, Enrique Laraac,ad, Line Le Gallae, Denis H. Lynnaf,ag, David G. Mannah, Ramon Massana i Moleraq, Edward A. D. Mitchellac,ai , Christine Morrowaj, Jong Soo Parkak, Jan W. Pawlowskial, Martha J. Powellam, Daniel J. Richteran, Sonja Rueckertao, Lora Shadwickap, Satoshi Shimanoaq, Frederick W. Spiegelap, Guifré Torruella i Cortesar, Noha Youssefas, Vasily Zlatogurskyh,at, Qianqian Zhangau,av. -
Slimes in the City: the Diversity of Myxomycetes from Inner-City and Semi-Urban Parks in Sydney, Australia
Fungal Ecology 39 (2019) 37e44 Contents lists available at ScienceDirect Fungal Ecology journal homepage: www.elsevier.com/locate/funeco Slimes in the city: The diversity of myxomycetes from inner-city and semi-urban parks in Sydney, Australia * Arisa Hosokawa a, Chris R. Reid b, Tanya Latty a, a School of Life and Environmental Sciences, University of Sydney, Sydney, New South Wales, Australia b Department of Biological Sciences, Macquarie University, Sydney, NSW, 2109, Australia article info abstract Article history: Natural and agricultural areas are rapidly becoming urbanised, causing changes in habitat structure and Received 28 January 2018 diversity. Although the effect of urbanisation on the diversity of terrestrial plants and animals has been Received in revised form well studied, there is a significant gap in our understanding of how urbanisation impacts diversity in 24 October 2018 protists. Here, we measure the diversity of plasmodial slime moulds (a group of large, macroscopic Accepted 8 November 2018 protists also known as myxomycetes) in inner-city and semi-urban parks. We studied the impact of a Available online 14 December 2018 range of environmental characteristics (pH, temperature, canopy cover, area of green space and substrate Corresponding Editor: Prof. L. Boddy type) on species richness and composition of myxomycetes. We also examined the influence of different degrees of urban development surrounding these parks. Species composition was significantly different Keywords: between substrate types but not between inner-city and semi-urban parks. Temperature was the only Inner-city environmental characteristic that affected diversity, having a negative effect on myxomycete presence. Parks Our findings suggest that myxomycete diversity in urban parks is driven by factors at the substrate level, Plasmodial slime moulds and not by the park's location within the city (inner city or semi-urban). -
Volume 2, Chapter 3-3: Slime Molds: Ecology and Habitats
Glime, J. M. 2019. Slime Molds: Ecology and Habitats – Bark and Logs. Chapt. 3-3. In: Glime, J. M. Bryophyte Ecology. 3-3-1 Volume 2. Bryological Interaction. Ebook sponsored by Michigan Technological University and the International Association of Bryologists. Last updated 18 July 2020 and available at <https://digitalcommons.mtu.edu/bryophyte-ecology/>. CHAPTER 3-3 SLIME MOLDS: ECOLOGY AND HABITATS – BARK AND LOGS TABLE OF CONTENTS Habitats ............................................................................................................................................................... 3-3-2 Bark Associations................................................................................................................................................ 3-3-2 Liverwort vs Moss Associations ................................................................................................................ 3-3-11 Limiting Factors ......................................................................................................................................... 3-3-13 Log and Stump Associations ............................................................................................................................. 3-3-15 Comparison of Checklists .......................................................................................................................... 3-3-22 Where Bryophyte and Slime Mold Meet ................................................................................................... 3-3-32 What Do -
First Steps in Myxomycete Conservation Activities.Pdf
Fungal Conservation issue 4: February 2014 First steps in myxomycete conservation activities Tetyana Krivomaz Email [email protected] Myxomycetes an ideal model for building conservation strategy Slime moulds are eukaryotic, phagotrophic, fungus-like organisms, which living nearly in all terrestrial ecosystems. In previous systems slime molds include several groups: Myxomycetes -“true slime moulds”, Protosteliomycetes – microscopic relatives of Myxomycetes, Dictyosteliomycetes –soil inhabitants, Copromyxida – animal dung inhabitants, Acrasida – with individual independent cells that can act as one organism, Plasmodiophoromycota – cell parasitic species. All this groups have a plasmodial stage in their life cycle. Modern systems recognize only Dictyosteliomycetes, Protosteliomycetes and Myxomycetes (Adl et al., 2012). Copromyxida belong to the same phylogenic branch as Amoebozoa. No close relatives are known for Acrasida and Plasmodiophoromycota. The conservation strategy model begins with Myxomycetes, characterized by a remarkable transformation from an animal-like to a fungus-like form. These organisms develop very rapidly, have a high reproductive potential, and seem to possess effective dispersal mechanisms. Myxomycetes tend to be rather inconspicuous. Most parts of the myxomycete life cycle exist as vegetative stages, mobile free- living plasmodia that typically thrive in cool and shady moist places. They feed on bacteria, protozoa, yeast cells, fungi, organic remains etc. After a period of feeding and growth, fruiting bodies develop in drier and more exposed locations. Most are relatively ephemeral. They contain numerous spores which can be dispersed by wind and will eventually germinate and develop into a plasmodium under suitable conditions. Myxomycetes spend a portion of their life cycle in a state where their very presence in a given habitat can be exceedingly difficult if not impossible to determine. -
Towards a Phylogenetic Classification of the Myxomycetes
Phytotaxa 399 (3): 209–238 ISSN 1179-3155 (print edition) https://www.mapress.com/j/pt/ PHYTOTAXA Copyright © 2019 Magnolia Press Article ISSN 1179-3163 (online edition) https://doi.org/10.11646/phytotaxa.399.3.5 Towards a phylogenetic classification of the Myxomycetes DMITRY V. LEONTYEV1*¶, MARTIN SCHNITTLER2¶, STEVEN L. STEPHENSON3, YURI K. NOVOZHILOV4 & OLEG N. SHCHEPIN4 1Department of Botany, H.S. Skovoroda Kharkiv National Pedagogical University, Valentynivska 2, Kharkiv 61168 Ukraine. 2Institute of Botany and Landscape Ecology, Ernst Moritz Arndt University Greifswald, Soldmannstr. 15, Greifswald 17487, Germany. 3Department of Biological Sciences, University of Arkansas, Fayetteville, Arkansas 72701, USA. 4Laboratory of Systematics and Geography of Fungi, The Komarov Botanical Institute of the Russian Academy of Sciences, Prof. Popov Street 2, 197376 St. Petersburg, Russia. * Corresponding author E-mail: [email protected] ¶ These authors contributed equally to this work. In memoriam Irina O. Dudka Abstract The traditional classification of the Myxomycetes (Myxogastrea) into five orders (Echinosteliales, Liceales, Trichiales, Stemonitidales and Physarales), used in all monographs published since 1945, does not properly reflect evolutionary re- lationships within the group. Reviewing all published phylogenies for myxomycete subgroups together with a 18S rDNA phylogeny of the entire group serving as an illustration, we suggest a revised hierarchical classification, in which taxa of higher ranks are formally named according to the International Code of Nomenclature for algae, fungi and plants. In addition, informal zoological names are provided. The exosporous genus Ceratiomyxa, together with some protosteloid amoebae, constitute the class Ceratiomyxomycetes. The class Myxomycetes is divided into a bright- and a dark-spored clade, now formally named as subclasses Lucisporomycetidae and Columellomycetidae, respectively. -
A Review of Neotropical Myxomycetes (1828-2008)
Anales del Jardín Botánico de Madrid Vol. 65(2): 211-254 julio-diciembre 2008 ISSN: 0211-1322 A Review of Neotropical Myxomycetes (1828-2008) by Carlos Lado & Diana Wrigley de Basanta Real Jardín Botánico, CSIC, Plaza de Murillo 2, 28014 Madrid, Spain. [email protected] Abstract Resumen Lado, C. & Wrigley de Basanta, D. 2008. A Review of Neotropi- Lado, C. & Wrigley de Basanta, D. 2008. Revisión de los My- cal Myxomycetes (1828-2008). Anales Jard. Bot. Madrid 65(2): xomycetes del Neotrópico (1828-2008). Anales Jard. Bot. Ma- 211-254. drid 65(2): 211-254 (en inglés). A synthesis of the accumulated knowledge on myxomycetes Se realiza una síntesis sobre el conocimiento actual de los My- recorded from the Neotropical region is presented in this paper. xomycetes en el Neotrópico. La biodiversidad de estos microor- The biodiversity of these microorganisms in the Neotropics has ganismos en la región neotropical ha sido subestimada, pero been underestimated, and this paper shows that half the known este trabajo demuestra que la mitad de las especies conocidas species in the world have been recorded from the region. The en el mundo se han citado de esta región. La monografía que monograph by M.L. Farr, for the series Flora Neotropica, pub- M.L. Farr publicó en 1976, para la serie Flora Neotrópica, se ha lished in 1976, has been taken as a baseline. The records pro- tomado como punto de partida para la realización de este tra- duced after this date, some older obscure records, and data bajo. A ella se han incorporado las citas publicadas después de from recently published catalogues, monographs and other pa- esta fecha, algunas más antiguas pero raras, y datos de catálo- pers have been incorporated.