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Probabilistic Models of Species Discovery and Biodiversity
Probabilistic models of species discovery and biodiversity comparisons Stewart M. Ediea,1, Peter D. Smitsb, and David Jablonskia,b,1 aDepartment of the Geophysical Sciences, University of Chicago, Chicago, IL 60637; and bCommittee on Evolutionary Biology, University of Chicago, Chicago, IL 60637 Contributed by David Jablonski, February 16, 2017 (sent for review October 3, 2016; reviewed by Gene Hunt, Mark McPeek, and Andy Purvis) Inferring large-scale processes that drive biodiversity hinges on tion. We use this model to assess the stability of observed differ- understanding the phylogenetic and spatial pattern of species rich- ences in regional and among-clade diversity for a major animal ness. However, clades and geographic regions are accumulating group that has accrued newly described species at an unabated newly described species at an uneven rate, potentially affecting rate for the past 165 years: the marine bivalves. the stability of currently observed diversity patterns. Here, we In our Bayesian time series model [available from Zenodo present a probabilistic model of species discovery to assess the (doi.org/10.5281/zenodo.159033)], the number of species de- uncertainty in diversity levels among clades and regions. We use scribed in a given year is a function of the long- and short-term a Bayesian time series regression to estimate the long-term trend trends in description rate. We first model the trajectory of in the rate of species description for marine bivalves and find a dis- species accumulation using only the history of currently valid tinct spatial bias in the accumulation of new species. Despite these species description beginning with Linnaeus (14), the start- biases, probabilistic estimates of future species richness show con- ing point of formal taxonomy. -
Pectinoidea (Bivalvia: Propeamussiidae, Entoliidae and Pectinidae) from the Tarava Seamounts, Society Islands and the Tuamotu Archipelago (French Polynesia)
Pectinoidea (Bivalvia: Propeamussiidae, Entoliidae and Pectinidae) from the Tarava Seamounts, Society Islands and the Tuamotu Archipelago (French Polynesia) Henk H. DIJKSTRA Naturalis Biodiversity Center, Department of Marine Zoology, P.O. Box 9517, 2300 RA Leiden (The Netherlands) [email protected] Philippe MAESTRATI Muséum national d’Histoire naturelle, Département Systématique et Évolution, UMR 7138, case postale 51, 57, rue Cuvier, F-75231 Paris cedex 05 (France) [email protected] Dijkstra H. H. & Maestrati P. 2013. — Pectinoidea (Bivalvia: Propeamussiidae, Entoliidae and Pectinidae) from the Tarava Seamounts, Society Islands and the Tuamotu Archipelago (French Polynesia). Zoosystema 35 (3): 361-375. http://dx.doi.org/10.5252/z2013n3a2 ABSTRACT Eighteen species of Pectinoidea (six Propeamussiidae Abbott, 1954, one KEY WORDS Bivalvia, Entoliidae Teppner, 1922, eleven Pectinidae Rafinesque, 1815) are listed from French Polynesia, the Tarava Seamounts, Society Islands and Tuamotu Archipelago, French littoral, Polynesia. Four Propeamussiidae species (Parvamussium lamellatum n. sp., bathyal, new species, Parvamussium scutulatum n. sp., Parvamussium vesiculosum n. sp., Cyclopecten new records. comptulus n. sp.) are new to science. RÉSUMÉ Pectinoidea (Bivalvia: Propeamussiidae, Entoliidae and Pectinidae) des Monts sous- marins Tarava, des Îles de la Société et de l’Archipel des Tuamotu (Polynésie française). Dix-huit espèces de Pectinoidea (six Propeamussiidae Abbott, 1954, un Ento- MOTS CLÉS Bivalvia, liidae Teppner, 1922, onze Pectinidae Rafinesque, 1815) ont été récoltées des Polynésie française, Monts sous-marins Tarava, des Îles de la Société, et de l’Archipel des Tuamotu, littoral, Polynésie française. Quatre espèces de Propeamussiidae (Parvamussium lamel- bathyal, espèces nouvelles, latum n. sp., Parvamussium scutulatum n. sp., Parvamussium vesiculosum n. sp., nouvelles occurences. -
From the Indonesian Archipelago
A contribution to the knowledge of the pectinacean Mollusca (Bivalvia: Propeamussiidae, Entoliidae, Pectinidae) from the Indonesian Archipelago H.H. Dijkstra Dijkstra, H.H. A contribution to the knowledge of the pectinacean Mollusca (Bivalvia: Propea- mussiidae, Entoliidae, Pectinidae) from the Indonesian Archipelago. Zool. Verh. Leiden 271, 24.xii.l991: l-57, figs. 1-94, 1 table. — ISSN 0024-1652. Key words: Mollusca; Bivalvia; Propeamussiidae; Entoliidae; Pectinidae; taxonomy; Indonesia. Abstract: During the Indonesian-Dutch SNELLIUS -II Expedition (1984-1985) to the Indonesian Archipelago 46 pectinacean species were collected from the Flores Sea and Banda Sea (5°52'-9°57'S, 118°12'-123°58'E) at littoral to bathyal depth (835 m). One new pectinid genus, viz. Glorichlamys gen. nov., six new propeamussiids, viz. Parvamussium araneum spec. nov., Parvamussium carbaseum spec. nov., Parvamussium cassium spec. nov., Parvamussium undosum spec. nov., Parvamussium virgatum spec. nov., Cyclopecten cancellus spec. nov., and one new entoliid, viz. Pectinella aequoris spec. nov. are described. Twelve new records of Pectinacea for this region are mentioned. For Ostrea squamosa Gmelin, 1791 a lectotype is designated. In addition Pectinidae of the SNELLIUS-Expedition (1929- 1930) to the eastern region of Indonesia, and material collected by Dr B.W. Hoeksema near Sulawesi (1985, 1986) are reported upon. H.H. Dijkstra, Zoological Museum Amsterdam, P.O. Box 4766, 1009 AT Amsterdam, The Netherlands. Contents Introduction 3 Acknowledgements and abbreviations 5 Systematic part 6 Propeamussiidae 6 Entoliidae 23 Pectinidae 25 References 50 Index 55 Introduction For several centuries already Pectinidae are known from the Indonesian Archi• pelago. These were brought to Europe by explorers and commercial travellers. -
Foster Et Al., 2017A.Pdf
Provided by the author(s) and University College Dublin Library in accordance with publisher policies. Please cite the published version when available. Title A silicified Early Triassic marine assemblage from Svalbard Authors(s) Foster, William J.; Danise, Silvia; Twitchett, Richard J. Publication date 2016-11-10 Publication information Journal of Systematic Palaeontology, 15 (10): 851-877 Publisher Taylor & FrancisNatural Environment Research Council (NERC) grant [NE/I005641] Item record/more information http://hdl.handle.net/10197/10921 Publisher's statement This is an Open Access article distributed under the terms of the Creative Commons Attribution License http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. Publisher's version (DOI) 10.1080/14772019.2016.1245680 Downloaded 2021-10-01T07:17:08Z The UCD community has made this article openly available. Please share how this access benefits you. Your story matters! (@ucd_oa) © Some rights reserved. For more information, please see the item record link above. Journal of Systematic Palaeontology, 2016 http://dx.doi.org/10.1080/14772019.2016.1245680 A silicified Early Triassic marine assemblage from Svalbard William J. Fostera,b,c*, Silvia Daniseb,d and Richard J. Twitchettc aJackson School of Geosciences, University of Texas, Austin, TX 78712, USA; bEarth Sciences, Plymouth University, Plymouth, PL4 8AA, UK; cDepartment of Earth Sciences, Natural History Museum, London, SW7 5BD, UK; dDepartment of Geology, University of Georgia, Athens, GA 30602, USA (Received 7 December 2015; accepted 31 August 2016) Understanding how the marine biosphere recovered from the late Permian mass extinction event is a major evolutionary question. -
Notes on the Mountain Limestone and Lower Carboniferous Rocks of the Fifeshire Coast from Burntisland to St Andrews
( 385 ) XVI.—Notes on the Mountain Limestone and Lower Carboniferous Rocks of the Fifeshire Coast from Burntisland to St Andrews. By the Rev. THOMAS BROWN, Edinburgh. (Read 17th April 1860.) Introduction. Mountain Limestone—continued. I. General Course of Strata. 2. Estuarine Strata, F to L. II. Trap Rocks. 3. Limestone L. III. Mountain Limestone. IV. Lower Carboniferous. 1. Six Upper Limestones, A to F. Myalina Beds. Corals. Petrified Trees. Shells. Marine Beds. Crustacea. Fossils. Fish. V. Results—The Two Groups defined. Tuberculated Fish. Introduction. In this paper I shall first refer to the circumstances under which the follow- ing observations were made. I had gone in the autumn of 1856 for a few weeks to Elie on the Fife coast, and was induced, as a means of relaxation and exercise in the open air, to pay some attention to the geology of the neighbourhood, resuming for a brief interval what was once a favourite pursuit. About a mile to the east of the village, I found a stratum well deserving attention—a thin bed of limestone—dipping in- land a little beyond the cliff on which stands the ruined Castle of Ardross. The fossil shells which it contained were of unusual form, and beautifully preserved ; there were fish remains of two or three species, and a small group of crustaceans still more remarkable. Among the fish I thought I could detect the large scales of an Irish species—the Holoirtijchius Fortlockii—and among the crustaceans there were the valves of Dithyrocaris, a genus particularly characteristic of the Irish beds. At once the question arose whether these fossils might not serve as links connecting this Ardross bed with the Irish series. -
TREATISE ONLINE Number 48
TREATISE ONLINE Number 48 Part N, Revised, Volume 1, Chapter 31: Illustrated Glossary of the Bivalvia Joseph G. Carter, Peter J. Harries, Nikolaus Malchus, André F. Sartori, Laurie C. Anderson, Rüdiger Bieler, Arthur E. Bogan, Eugene V. Coan, John C. W. Cope, Simon M. Cragg, José R. García-March, Jørgen Hylleberg, Patricia Kelley, Karl Kleemann, Jiří Kříž, Christopher McRoberts, Paula M. Mikkelsen, John Pojeta, Jr., Peter W. Skelton, Ilya Tëmkin, Thomas Yancey, and Alexandra Zieritz 2012 Lawrence, Kansas, USA ISSN 2153-4012 (online) paleo.ku.edu/treatiseonline PART N, REVISED, VOLUME 1, CHAPTER 31: ILLUSTRATED GLOSSARY OF THE BIVALVIA JOSEPH G. CARTER,1 PETER J. HARRIES,2 NIKOLAUS MALCHUS,3 ANDRÉ F. SARTORI,4 LAURIE C. ANDERSON,5 RÜDIGER BIELER,6 ARTHUR E. BOGAN,7 EUGENE V. COAN,8 JOHN C. W. COPE,9 SIMON M. CRAgg,10 JOSÉ R. GARCÍA-MARCH,11 JØRGEN HYLLEBERG,12 PATRICIA KELLEY,13 KARL KLEEMAnn,14 JIřÍ KřÍž,15 CHRISTOPHER MCROBERTS,16 PAULA M. MIKKELSEN,17 JOHN POJETA, JR.,18 PETER W. SKELTON,19 ILYA TËMKIN,20 THOMAS YAncEY,21 and ALEXANDRA ZIERITZ22 [1University of North Carolina, Chapel Hill, USA, [email protected]; 2University of South Florida, Tampa, USA, [email protected], [email protected]; 3Institut Català de Paleontologia (ICP), Catalunya, Spain, [email protected], [email protected]; 4Field Museum of Natural History, Chicago, USA, [email protected]; 5South Dakota School of Mines and Technology, Rapid City, [email protected]; 6Field Museum of Natural History, Chicago, USA, [email protected]; 7North -
Silver Creek Hydraulic Limestone Southeastern Indiana
, \ " THE Silver Creek Hydraulic Limestone OF Southeastern Indiana. By C. E. SIEBENTHAL. 1900. / ! LETTER OF TRANSMITTAL. Bloomington, Ind., January 10, 1901. Dear Sir-I have the honor to transmit herewith my report upon the "Silver Creek Hydraulic Limestone," written in 1899 and em bodying the results of field work done in that year, but recently gone over and brought down to date. I take pleasure in acknowledging the services of Messrs. H. M. Adkinson and F. H. H.Calhoun, gradu ate students at the University of Chicago, who generously gave their assistance in the gathering of the data for the paper. The thanks of the Survey are also due to Prof. Stuart Weller, of the University of Chicago, for valuable assistance in the paleontological part of this report. Respectfully submitted, C. E. SIEBENTHAL. Prof. W. S. Blatchley, State Geologist. (332) ,\ THE SILVER CREEK. HYDRAULIC LIMESTONE OF SOUTHEASTERN INDIANA. By U. E. SIEBENTHAL. OUTLINK 1. STRATIGRAPHY. Historical Resume. 1827. 1. A. Lapham. 1841. Jas.Hall. 1843. Dr. A. Clapp. 1843. D. D. Owen. 1843. H. D. Rogers. 1847. Yandell & Bhumal'lI. 1857. Maj. S. S. Lyon. 1859. Lyon and CassedllY· 1860. Maj. S. S. Lyon, 1874. W. W. Borden. 1875. W. W. Borden. 1879. Jas. Hall. 1897. Aug. F. Foerste. 1899. E. M. Kindle. Stratigraphy and Paleontology. Knobstone. Rockford limestone. New Albany black shale. Sellersburg limestone. Silver Creek hydraulic IimestOlIP. Jefl'ersonville limestone. Pendleton sandstone. Upper Silurian. Lower Silurian. Local Details of Distribution and Structure. Clark County. River region. Silver Creek region. Charlestown region. Scott County. Lexington region. Woods Fork region. -
Smithsonian Miscellaneous Collections
VOL. 52, PL. IX SMITHSONIAN MISCELLANEOUS COLLECTIONS HENRY NETTELROTH Vol. 52 1908 Smithsonian Miscellaneous Collections Vol. V Quarterly issue Part 2 THE XETTELROTH COLLECTION OF INVERTEBRATE FOSSILS By R. S. BASSLER (With 3 Plates) One of the most important accessions in the division of strati- graphic paleontology during the year 1907 was the collection of the late Henry Nettelroth, acquired jointly by the Smithsonian Institu- tion and the U. S. National Museum from his sons, H. H. Nettel- roth and Dr. Alexander Nettelroth, of Louisville, Kentucky. The registration and installation of these specimens was recently com- pleted, and it seemed in order, as well as very desirable on account of Mr. Nettelroth's work in science and of the valuable nature of his collection, to publish an article upon the subject. The collection is composed entirely of invertebrate fossils, mainly from the Silurian and Devonian strata of Indiana and Kentucky, although many other American as well as foreign localities are represented. The total number of specimens is rather small compared with the number of species represented, the collection comprising about 8,000 specimens, registered under nearly 1,000 entries; but all of the material is the best that could be had. Mr. Nettelroth prided himself upon the fact that his cabinet contained only choice specimens, representing years of careful selection. Imperfect material was retained only when it showed something of scientific interest. In exchanging. Air. Nettelroth also insisted upon a few good specimens rather than numerous poor representatives of a species. Likewise he paid par- ticular attention to a class of fossils, the mollusca, which is seldom well represented in the cabinets of even the best collectors. -
Early Triassic (Late Griesbachian) Gastropods from South China (Shanggan, Guangxi)
Swiss J Geosci (2010) 103:121–128 DOI 10.1007/s00015-010-0005-5 Early Triassic (Late Griesbachian) gastropods from South China (Shanggan, Guangxi) Andrzej Kaim • Alexander Nu¨tzel • Hugo Bucher • Thomas Bru¨hwiler • Nicolas Goudemand Received: 17 December 2009 / Accepted: 2 February 2010 / Published online: 9 June 2010 Ó Swiss Geological Society 2010 Abstract An Early Triassic (Griesbachian) gastropod about gastropods from the aftermath of the end-Permian fauna is reported from South China (Shanggan, Guangxi) mass extinction event. The gastropod association from and consists of four species: Bellerophon abrekensis, Shanggan shares one species with Primorye, Far East Wannerispira shangganensis Kaim & Nu¨tzel sp. nov., Russia (B. abrekensis). Two species, W. shangganensis and Naticopsis sp., and Palaeonarica guangxinensis Kaim & P. guangxinensis, closely resemble specimens reported Nu¨tzel sp. nov. The taxon Wannerispira Kaim & Nu¨tzel from the Griesbachian of Oman. This could suggest that nom. nov. replaces Pagodina Wanner non Van Beneden. Griesbachian gastropod faunas of the Tethys were rather This is the first report of Bellerophon abrekensis from homogenous although the data are still scarce. China. Previously, it was only known from its type locality in Far East Russia. Wannerispira shangganensis sp. is the Keywords Gastropoda Á China Á Early Triassic Á first certain Triassic report of the Permian subfamily Extinction Á Recovery Á Taxonomy Neilsoniinae and represents a holdover taxon. The neritimorph Palaeonarica is reported for the first time from the Early Triassic and this is the oldest occurrence of this genus. Introduction Compared with other Griesbachian gastropods, the present material is relatively well preserved so that the taxonomy The fauna in the immediate aftermath of the end-Permian rests on rather firm ground. -
A Discussion of the Geology and an Isopach Map of the Pennsylvanian System in Wyoming and Adjacent Areas B
Montana Tech Library Digital Commons @ Montana Tech Bachelors Theses and Reports, 1928 - 1970 Student Scholarship 5-1948 A Discussion of the Geology and an Isopach Map of the Pennsylvanian System in Wyoming and Adjacent Areas B. R. Alto Follow this and additional works at: http://digitalcommons.mtech.edu/bach_theses Part of the Ceramic Materials Commons, Environmental Engineering Commons, Geology Commons, Geophysics and Seismology Commons, Metallurgy Commons, Other Engineering Commons, and the Other Materials Science and Engineering Commons Recommended Citation Alto, B. R., "A Discussion of the Geology and an Isopach Map of the Pennsylvanian System in Wyoming and Adjacent Areas" (1948). Bachelors Theses and Reports, 1928 - 1970. 239. http://digitalcommons.mtech.edu/bach_theses/239 This Bachelors Thesis is brought to you for free and open access by the Student Scholarship at Digital Commons @ Montana Tech. It has been accepted for inclusion in Bachelors Theses and Reports, 1928 - 1970 by an authorized administrator of Digital Commons @ Montana Tech. For more information, please contact [email protected]. A DISCUSSION OF 1m GEOLOGY AND .AN ISOPACH 1VlAPOJ!' TII.E PEN-NSYLVANIAN SYSTElJ IN WYOMING AND ADa-ACEl~T AREAS by B. R. Alto A Thesis Submitted to the Department or Geology in partial fulfilbuent of the requirements for the Degree or Bachelor of Science in Geological Engineering Montana School of Mines Butte, Montana :May, 1948 A DISCUSSION OF [raE GEOLOGY AND AN ISOPACH ~ OF THE PENNSYLVANIAN SYSTEM IN WYOMING AND ADJACENT AREAS by B. R. Alto A Thesis Submitted to the Department of Geology in partial fulfillment of the requirements for the Degree of ~achelor of Science in Geological Engineering 19150 Montana School of Mines Butte, Montana May, 1948 CONTENTS ~ Page <t> ~ Introduction • • • • • • • • • • 1 )ow-.. -
Boas Poster (NHRE 2013)
Phylogenetics within Bellerophon: Breaking down a classic wastebasket taxon Caitlin M. Boas1 and Peter J. Wagner2 1 City University of New York - Brooklyn College - Earth and Environmental Sciences 2 Smithsonian National Museum of Natural History - Department of Paleobiology Introduction Results First described by de Montfort in 1808, the genus Bellerophon typifies an extinct group of Paleozoic gastropods, the Bellerophontina. With rare exceptions, these snails have planispiral-coiling and thus superficially resemble nautiloids and ammonites rather than “normal” snails. Bellerophon species were marine, and are found from carbonate and siliciclastic rocks B. propinquus B. lineatus T. striatus B. aff. newberryi B. vasulites A. koeni A. maera indicating shallow water and subtidal environments. This results in a variety of * * preservational modes that must be accommodated when scoring character states. Although workers have established numerous new genera from species A. labyrinthodes B. plicatus B. aff. tangentialis B. sublaevis B. munsteri B. bicarenus B. umbilicaris originally assigned to Bellerophon, there are over 150 species currently assigned to this taxon in the Paleobiology Database. Planispiral coiling of naturally sectioned silicified Bellerophon deflectus specimen. B. tangentialis B. jeffersonensis B. aff. scissile B. scissile B. costatus B. gibsoni B. vespertinus Problem B. needlensis B. graphicus P. aff. megalius P. megalius B. wewokanus B. stevensianus P. percarinatus Bellerophon is an old taxon that typifies a suborder. Like most such taxa, it is assigned dozens of species * and is a likely “wastebasket” taxon. This can hide origination and extinction dynamics as well as trends B. harrodi B. crassus B. aff. crassus B. singularis B. huecoensis B. hilli B. deflectus in morphologic evolution. -
Bibliography and Index
Bulletin No. 203. Series G, Miscellaneous, 23 DEPARTMENT OF THE INTERIOR UNITED STATES GEOLOGICAL SURVEY CHARLES .1). YVALCOTT, DIRECTOR BIBLIOGRAPHY AND INDEX FOR T I-I E Y E A. R 1 9 O 1 BY FRED BOUGHTON "WEEKS WASHINGTON - GOVERNMENT PRINTING OFFICE 1902 CONTENTS, Page. Letter of transmittal....................................................... 5 Introduction ......... 4 ................................................... 7 List of publications examined ............................................. 9 Bibliography ............................................................ 13 Addenda to bibliographies for previous years............................... 95 Classified key to the index ...........'.......... ............................ 97 Index ..................................................................... 103 LETTER OF TRANSM1TTAL. DEPARTMENT OF THE INTERIOR, UNITED STATES GEOLOGICAL SURVEY, Washington, D. 0., July % SIR: I have the honor to transmit herewith the manuscript of a Bibliography and Index of North American Geology, Paleontology, Petrology, and Mineralogy for the Year 1901, and to request that it be published as a Bulletin of the Survey. Yours respectfully, F. B. WEEKS. Hon. CHARLES D. WALCOTT, director United State* Geological Survey. BIBLIOGRAPHY AND INDEX OF NORTH AMERICAN GEOLOGY, PALEONTOLOGY, PETROLOGY, AND MINERALOGY FOR THE YEAR 1901. By FRED BOUGHTON WEEKS. INTRODUCTION. The preparation and arrangement of the material of the Bibliog raphy and Index for 1901 is similar to that adopted for the previous publications.(Bulletins Nos. 130, 135, 146, 149, 156, 162, 172, 188, and 189). Several papers that should have been entered in the pre vious bulletins are here recorded, and the date of publication is given with each entry. Bibliography. The bibliography consists of full titles of separate papers, arranged alphabetically by authors' names, an abbreviated reference to the publication in which the paper is printed, and a brief description of the contents, each paper being numbered for index reference.