Dimensional Gas Chromatography
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Solid phase microextraction coupled to comprehensive two- dimensional gas chromatography–time-of-flight mass spectrometry for metabolite profiling of apples: Potential of non-invasive in vivo sampling assay in characterization of metabolome by Sanja Risticevic A thesis presented to the University of Waterloo in fulfillment of the thesis requirement for the degree of Doctor of Philosophy in Chemistry Waterloo, Ontario, Canada, 2012 Sanja Risticevic 2012 Author’s Declaration I hereby declare that I am the sole author of this thesis. This is a true copy of the thesis, including any required final revisions, as accepted by my examiners. I understand that my thesis may be made electronically available to the public. ii Abstract The objective of the current research project relies on implementation of solvent-free, green and environmentally friendly solid phase microextraction (SPME) sample preparation alternative in the area of complex sample characterization. The advantages that the technique offers in comparison to traditional methods of sample preparation including solvent-free implementation, short sample preparation times, small sample amount requirements, advanced automation capability and minimization of matrix effects are effectively employed during ex vivo and laboratory investigations of complex samples. More important, the underlying features of the technique including miniaturized format, nonexhaustive extraction recoveries and on-site compatibility were fully exploited in order to investigate the metabolome of biological systems directly on the site. Hence, in vivo SPME extraction format was employed in direct immersion SPME sampling of biological systems, hence eliminating the crucial prerequisites associated with multiple preparative steps and incorporation of metabolism quenching that are encountered during implementation of traditional sample preparation methods in global metabolite analysis. Furthermore, in vivo sampling format was hyphenated to comprehensive two-dimensional gas chromatography – time-of-flight mass spectrometry (GCxGC-ToFMS) for high-resolution sampling of volatile and semivolatile metabolites in ‘Honeycrisp’ apples. The initial stages of the project involved evaluation of performance characteristics of commercial SPME extraction coatings in terms of extraction selectivity, extraction sensitivity and desorption efficiency by employing headspace SPME analysis of both aqueous standards spiked with representative volatile and semivolatile metabolites as well as the apple homogenate. DVB/CAR/PDMS coating was selected on the basis of optimum metabolite coverage and extraction sensitivity and was consequently employed during ex vivo and in vivo sampling assays corresponding to determination of volatile and iii semivolatile metabolites. The former extraction methodology incorporated appropriate sample preparation steps for quenching metabolic activity so that the relevant metabolome profile is not biased against unstable metabolites and those that are susceptible to inter-metabolite conversions which adversely impact preservation of metabolite identity. The two sample preparation assays were compared in terms of metabolite coverage and analytical precision in order to identify SPME route toward characterization of more representative metabolome and determination of instantaneous and more ‘true’ metabolism snapshoot. This is the first report illustrating the implementation of in vivo direct immersion SPME assay for non invasive determination of endogenous fruit metabolites whose profiles and contents are highly correlated to a multitude of influential fruit quality traits. iv Acknowledgements I am very grateful to many many people from University of Waterloo and external industrial and government organizations for completion of this wonderful project. First of all, I am thankful to my supervisor, Dr. Janusz Pawliszyn for giving me the opportunity to have such a wonderful and exciting PhD project, the project whose completion has not only been rewarding contribution to the field of analytical chemistry and his research group, but also has been important in extending the range of my own expertise. Throughout the years, I have been intensively and continuously learning new concepts from all possible dimensions that were composing my project, including sample preparation, in vivo SPME, comprehensive two-dimensional gas chromatography and time-of- flight mass spectrometry. I am proud of the extent of knowledge and level of excellence that I acquired during my PhD years and how much I have matured as a scientist and an analytical chemist during the period of my PhD program. Thank you professor Pawliszyn for giving me time to learn new methodology and to comprehensively investigate the effects of many experimental conditions and variables on the quality of the analytical method. Thank you so much, because I realize that my instrumental investigations not only made me learn and learn and learn but also resulted in the development of robust and high- quality SPME-GCxGC-ToFMS method that I am proud of and that has been impressing me on daily basis with acquisition of reliable data sets. I am also very grateful for the financial support that you offered, for the opportunity to engage and be responsible for SPME course coordination and organization, for having your support to participate in international meetings and conferences and for the assignment of laboratory manager role. Thank you for allowing me to be comprehensive and detailed, for trusting in reliability and accuracy of my results and for believing in me and my capabilities in encountering daily challenges. v I am also very grateful to my advisory committee member, Dr. Jennifer DeEll from Ontario Ministry of Agriculture, Food and Rural Affairs (OMAFRA) (Simcoe, ON, Canada) for allowing the access to representative and reliable metabolomics sample sets, for editing my manuscripts and giving me valuable feedback on improving my written thesis document. It was my pleasure to have Dr. Michael Chong on my advisory committee and I am grateful to him about discussions on differential metabolites and their uniqueness to ex vivo and in vivo SPME modes of sampling. It was my pleasure to have Dr. Wojciech Gabryelski, Dr. Simon Chuong and Dr. Hans-Gerd Janssen on my committee and I thank them for contributing to improvement of my written thesis document. I am thanking my committee members for providing the excellent feedback about the organization, quality and structure of my thesis, for indicating that my results were valuable to the field of analytical chemistry and for nominating my thesis for award. I would also like to acknowledge Mr. Olivier Niquette and Mr. Chris Warren from LECO (St. Joseph, MI, USA) for allowing the cost-effective addition of GCxGC-ToFMS instrument to our InFAReL laboratory to be employed in my PhD project. I am thankful for your support during installation, configuration and maintenance of the instrument during all the years of my PhD project. I am grateful to Mr. Olivier Niquette for listening about my research, for being interested in and enthusiastic about my results, and for spending long hours and days trying to resolve a particular instrumental problem in the light of me being able to proceed with experiments and to have a more reliable method. I am also very grateful to Mr. Chris Warren and Dr. Tomas Kovalczuk for approving and organizing my participation at EUROanalysis conference in Belgrade (Serbia, September 2011) as it was my pleasure to do so and to present my results on LECO Pegasus 4D GCxGC- ToFMS system. I am grateful to Mr. Len Sidisky from Supelco (Bellefonte, PA, USA) for providing Supelcowax second dimension column for second dimension separation on GCxGC-ToFMS system. Special acknowledgment and vi gratefulness goes to Dr. Jack Cochran from Restek (Bellefonte, PA, USA) for carefully listening to my concerns about retention time stability in second dimension and providing the column on which such challenges were overcome. The possibility of performing automated data processing and alignment of metabolites greatly enhanced the speed of processing and generation of data matrices compatible with subsequent multivariate analysis. I am thankful to personnel from Gerstel (Linthicum, MD, USA), including Mr. Edward Pfannkoch, Mr. Jim Daley and Mr. Tim Pence for configuration of MultiPurpose Sampler (MPS 2), for considering the issues with autosampler configuration a high priority and for helping resolve multiple problems with autosampler configuration, installation and operation in impressively efficient and timely manner. I thank the two hard working people in the chemistry department at University of Waterloo, Mr. Kenneth Gosselink and Mr. Matthew Sternbauer from Chem Stores for going out of their way many times to assist me in organizations and preparations for in vivo sampling. I thank Erica Silva, my coworker and friend for attending on-site sampling sessions and for being inspired by my project and the results I was acquiring. I will never forget how much your presence has meant to me. I thank you for being a good friend and a great listener. I thank my two very best ‘coworker’ friends and amazing coworkers, Dr. Dajana Vuckovic and Dr. Rosalba Vatinno, for unconditional support and friendship, for being always there, for enjoying the collaborative activities that we were involved in, and for constantly impressing me with their dedication, motivation, enthusiasm, positive energy, hard work and amazing research potential.