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An R Package for Visualizing Bayesian Phylogenetic Analyses from Revbayes
bioRxiv preprint doi: https://doi.org/10.1101/2021.05.10.443470; this version posted May 11, 2021. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. RevGadgets: an R Package for visualizing Bayesian phylogenetic analyses from RevBayes Carrie M. Tribble1, 2, 3, ∗, William A. Freyman4, Michael J. Landis5, Jun Ying Lim6, Joelle¨ Barido-Sottani7, Bjørn Tore Kopperud8, 9, Sebastian Hohna¨ 8, 9, and Michael R. May1, 2 1Department of Integrative Biology University of California, Berkeley, CA 94709, USA 2University Herbarium, University of California, Berkeley, CA 94709, USA 3Current address: School of Life Sciences, University of Hawai‘i at M¯anoa,Honolulu, HI, 96822, USA 423andMe, Inc., Sunnyvale, CA, 94086, USA 5Department of Biology, Washington University in St. Louis, MO 63130, USA 6School of Biological Sciences, Nanyang Technological University, Singapore 639798 7Department of Ecology, Evolution and Organismal Biology, Iowa State University, Ames, IA 50011, USA 8GeoBio-Center, Ludwig-Maximilians-Universit¨atM¨unchen,80333 Munich, Germany 9Department of Earth and Environmental Sciences, Paleontology & Geobiology, Ludwig-Maximilians-Universit¨atM¨unchen,80333 Munich, Germany ∗E-mail: [email protected] Summary 1. Statistical phylogenetic methods are the foundation for a wide range of evolutionary and epidemiological stud- ies. However, as these methods grow increasingly complex, users often encounter significant challenges with summarizing, visualizing, and communicating their key results. 2. We present RevGadgets, an R package for creating publication-quality figures from the results of a large variety of phylogenetic analyses performed in RevBayes (and other phylogenetic software packages). -
On the Socio-Sexual Behaviour of the Extinct Ursid Indarctos Arctoides: an Approach Based on Its Baculum Size and Morphology
View metadata, citation and similar papers at core.ac.uk brought to you by CORE provided by Digital.CSIC On the Socio-Sexual Behaviour of the Extinct Ursid Indarctos arctoides: An Approach Based on Its Baculum Size and Morphology Juan Abella1,2*, Alberto Valenciano3,4, Alejandro Pe´rez-Ramos5, Plinio Montoya6, Jorge Morales2 1 Institut Catala` de Paleontologia Miquel Crusafont, Universitat Auto`noma de Barcelona. Edifici ICP, Campus de la UAB s/n, Barcelona, Spain, 2 Museo Nacional de Ciencias Naturales-CSIC, Madrid, Spain, 3 Departamento de Geologı´a Sedimentaria y Cambio Medioambiental. Instituto de Geociencias (CSIC, UCM), Madrid, Spain, 4 Departamento de Paleontologı´a, Facultad de Ciencias Geolo´gicas UCM, Madrid, Spain, 5 Institut Cavanilles de Biodiversitat i Biologia Evolutiva, Universitat de Vale`ncia, Paterna, Spain, 6 Departament de Geologia, A` rea de Paleontologia, Universitat de Vale`ncia, Burjassot, Spain Abstract The fossil bacula, or os penis, constitutes a rare subject of study due to its scarcity in the fossil record. In the present paper we describe five bacula attributed to the bear Indarctos arctoides Depe´ret, 1895 from the Batallones-3 site (Madrid Basin, Spain). Both the length and morphology of this fossil bacula enabled us to make interpretative approaches to a series of ecological and ethological characters of this bear. Thus, we suggest that I. arctoides could have had prolonged periods of intromission and/or maintenance of intromission during the post-ejaculatory intervals, a multi-male mating system and large home range sizes and/or lower population density. Its size might also have helped females to choose from among the available males. -
ARTHROPODA Subphylum Hexapoda Protura, Springtails, Diplura, and Insects
NINE Phylum ARTHROPODA SUBPHYLUM HEXAPODA Protura, springtails, Diplura, and insects ROD P. MACFARLANE, PETER A. MADDISON, IAN G. ANDREW, JOCELYN A. BERRY, PETER M. JOHNS, ROBERT J. B. HOARE, MARIE-CLAUDE LARIVIÈRE, PENELOPE GREENSLADE, ROSA C. HENDERSON, COURTenaY N. SMITHERS, RicarDO L. PALMA, JOHN B. WARD, ROBERT L. C. PILGRIM, DaVID R. TOWNS, IAN McLELLAN, DAVID A. J. TEULON, TERRY R. HITCHINGS, VICTOR F. EASTOP, NICHOLAS A. MARTIN, MURRAY J. FLETCHER, MARLON A. W. STUFKENS, PAMELA J. DALE, Daniel BURCKHARDT, THOMAS R. BUCKLEY, STEVEN A. TREWICK defining feature of the Hexapoda, as the name suggests, is six legs. Also, the body comprises a head, thorax, and abdomen. The number A of abdominal segments varies, however; there are only six in the Collembola (springtails), 9–12 in the Protura, and 10 in the Diplura, whereas in all other hexapods there are strictly 11. Insects are now regarded as comprising only those hexapods with 11 abdominal segments. Whereas crustaceans are the dominant group of arthropods in the sea, hexapods prevail on land, in numbers and biomass. Altogether, the Hexapoda constitutes the most diverse group of animals – the estimated number of described species worldwide is just over 900,000, with the beetles (order Coleoptera) comprising more than a third of these. Today, the Hexapoda is considered to contain four classes – the Insecta, and the Protura, Collembola, and Diplura. The latter three classes were formerly allied with the insect orders Archaeognatha (jumping bristletails) and Thysanura (silverfish) as the insect subclass Apterygota (‘wingless’). The Apterygota is now regarded as an artificial assemblage (Bitsch & Bitsch 2000). -
Fossil Insects from the Late Oligocene Enspel Lagerstätte and Their Palaeobiogeographic and Palaeoclimatic Significance
Palaeobio Palaeoenv (2010) 90:49–58 DOI 10.1007/s12549-009-0013-5 ORIGINAL PAPER Fossil insects from the Late Oligocene Enspel Lagerstätte and their palaeobiogeographic and palaeoclimatic significance Sonja Wedmann & Markus Poschmann & Thomas Hörnschemeyer Received: 7 September 2009 /Revised: 30 September 2009 /Accepted: 26 October 2009 /Published online: 19 November 2009 # The Author(s) 2009. This article is published with open access at Springerlink.com Abstract Fossil insects can provide unique insights into document that the distribution of many insect groups in the evolutionary history, and their study has become increasingly Oligocene was distinctly wider than it is today. important in recent decades. In this paper, we give an over- view of the insect taphocoenosis from the upper Oligocene Keywords Enspel . Germany. Insects . Oligocene . Enspel Lagerstätte (Germany) and discuss taphonomic Palaeobiogeography. Paleogene . Taphocoenosis similarities with other localities. Among the fossil insects identified, terrestrial groups are highly dominant, with march flies (Bibionidae) and weevils (Curculionoidea) being the Introduction most common groups; aquatic insects are rare. We provide a detailed survey of the represented taxa, including new Fossil insects have been found in a wide range of different records of a predaceous diving beetle (Dytiscidae), a soldier deposits, and the record of insect fossils is surprisingly beetle (Cantharidae) and mayfly larvae (Ephemeroptera). diverse. Ambers around the world have yielded huge Updated information on the ants (Formicidae) and reticulated numbers of insect inclusions, but their record from other beetles (Cupedidae) is reported. The palaeoclimatic and deposits is probably equally large (e.g. Rasnitsyn and palaeobiogeographic inferences that can be drawn from the Quicke 2002; Grimaldi and Engel 2005). -
Bill Baggs Cape Florida State Park
Wekiva River Basin State Parks Approved Unit Management Plan STATE OF FLORIDA DEPARTMENT OF ENVIRONMENTAL PROTECTION Division of Recreation and Parks October 2017 TABLE OF CONTENTS INTRODUCTION ...................................................................................1 PURPOSE AND SIGNIFICANCE OF THE PARK ....................................... 1 Park Significance ................................................................................2 PURPOSE AND SCOPE OF THE PLAN..................................................... 7 MANAGEMENT PROGRAM OVERVIEW ................................................... 9 Management Authority and Responsibility .............................................. 9 Park Management Goals ...................................................................... 9 Management Coordination ................................................................. 10 Public Participation ............................................................................ 10 Other Designations ........................................................................... 10 RESOURCE MANAGEMENT COMPONENT INTRODUCTION ................................................................................. 13 RESOURCE DESCRIPTION AND ASSESSMENT..................................... 19 Natural Resources ............................................................................. 19 Topography .................................................................................. 19 Geology ...................................................................................... -
DUIM VAN DE PANDA Gratis Epub, Ebook
DUIM VAN DE PANDA GRATIS Auteur: Stephen Jay Gould Aantal pagina's: 303 pagina's Verschijningsdatum: none Uitgever: none EAN: 9789025400255 Taal: nl Link: Download hier Paleontoloog-superster overleden Je reageert onder je Twitter account. Je reageert onder je Facebook account. Houd me via e-mail op de hoogte van nieuwe reacties. Houd me via e-mail op de hoogte van nieuwe berichten. Spring naar inhoud. De extra duim van de panda Posted on januari 30, by kaspar55 — Plaats een reactie. Share this: Twitter Facebook. Vind ik leuk: Like Laden Geplaatst in De Pandabeer , Panda artikel , Panda informatie. Geef een reactie Reactie annuleren Vul je reactie hier in Vul je gegevens in of klik op een icoon om in te loggen. Uw vraag. Verstuur mijn vraag. Alle boeken zijn compleet en verkeren in normale antiquarische staat, tenzij anders beschreven. Kleine onvolkomenheden, zoals een ingeplakte ex- libris of een naam op het schutblad, zijn niet altijd vermeld U handelt deze order direct af met In libris libertas Na uw bestelling ontvangen u en In libris libertas een bevestiging per e-mail. In de e-mail staan de naam, adres, woonplaats en telefoonnummer van In libris libertas vermeld De Koper betaalt de verzendkosten, tenzij anders overeen gekomen In libris libertas kan betaling vooraf vragen Boekwinkeltjes. Als u een geschil hebt met één of meer gebruikers, dient u dit zelf op te lossen. U vrijwaart Boekwinkeltjes. Onthoud mijn gegevens. Uit onderz De ondernemingsrechtbank verwerpt het reddingsplan voor de plantagegroep van Hein Deprez. Hij staa Lees de volledige krant digitaal. Mijn DS Mijn account Afmelden. -
Honey Bee from Wikipedia, the Free Encyclopedia
Honey bee From Wikipedia, the free encyclopedia A honey bee (or honeybee) is any member of the genus Apis, primarily distinguished by the production and storage of honey and the Honey bees construction of perennial, colonial nests from wax. Currently, only seven Temporal range: Oligocene–Recent species of honey bee are recognized, with a total of 44 subspecies,[1] PreЄ Є O S D C P T J K Pg N though historically six to eleven species are recognized. The best known honey bee is the Western honey bee which has been domesticated for honey production and crop pollination. Honey bees represent only a small fraction of the roughly 20,000 known species of bees.[2] Some other types of related bees produce and store honey, including the stingless honey bees, but only members of the genus Apis are true honey bees. The study of bees, which includes the study of honey bees, is known as melittology. Western honey bee carrying pollen Contents back to the hive Scientific classification 1 Etymology and name Kingdom: Animalia 2 Origin, systematics and distribution 2.1 Genetics Phylum: Arthropoda 2.2 Micrapis 2.3 Megapis Class: Insecta 2.4 Apis Order: Hymenoptera 2.5 Africanized bee 3 Life cycle Family: Apidae 3.1 Life cycle 3.2 Winter survival Subfamily: Apinae 4 Pollination Tribe: Apini 5 Nutrition Latreille, 1802 6 Beekeeping 6.1 Colony collapse disorder Genus: Apis 7 Bee products Linnaeus, 1758 7.1 Honey 7.2 Nectar Species 7.3 Beeswax 7.4 Pollen 7.5 Bee bread †Apis lithohermaea 7.6 Propolis †Apis nearctica 8 Sexes and castes Subgenus Micrapis: 8.1 Drones 8.2 Workers 8.3 Queens Apis andreniformis 9 Defense Apis florea 10 Competition 11 Communication Subgenus Megapis: 12 Symbolism 13 Gallery Apis dorsata 14 See also 15 References 16 Further reading Subgenus Apis: 17 External links Apis cerana Apis koschevnikovi Etymology and name Apis mellifera Apis nigrocincta The genus name Apis is Latin for "bee".[3] Although modern dictionaries may refer to Apis as either honey bee or honeybee, entomologist Robert Snodgrass asserts that correct usage requires two words, i.e. -
Kretzoiarctos Gen. Nov., the Oldest Member of the Giant Panda Clade
Kretzoiarctos gen. nov., the Oldest Member of the Giant Panda Clade Juan Abella1*, David M. Alba2, Josep M. Robles2,3, Alberto Valenciano4,5, Cheyenn Rotgers2,3, Rau¨ l Carmona2,3, Plinio Montoya6, Jorge Morales1 1 Museo Nacional de Ciencias Naturales-Centro superior de Investigaciones Cientı´ficas (MNCN-CSIC), Madrid, Spain, 2 Institut Catala` de Paleontologia Miquel Crusafont, Cerdanyola del Valle`s, Barcelona, Spain, 3 FOSSILIA Serveis Paleontolo`gics i Geolo`gics, S.L., Sant Celoni, Barcelona, Spain, 4 Departamento de Geologı´a Sedimentaria y Cambio Clima´tico, Instituto de Geociencias; UCM-CSIC (Universidad Complutense de Madrid-Centro Superior de Investigaciones Cientı´ficas), Madrid, Spain, 5 Departamento de Paleontologı´a, Facultad de Ciencias Geolo´gicas UCM (Universidad Complutense de Madrid), Madrid, Spain, 6 Departament de Geologia, A` rea de Paleontologia, Universitat de Vale`ncia, Burjassot, Valencia, Spain Abstract The phylogenetic position of the giant panda, Ailuropoda melanoleuca (Carnivora: Ursidae: Ailuropodinae), has been one of the most hotly debated topics by mammalian biologists and paleontologists during the last century. Based on molecular data, it is currently recognized as a true ursid, sister-taxon of the remaining extant bears, from which it would have diverged by the Early Miocene. However, from a paleobiogeographic and chronological perspective, the origin of the giant panda lineage has remained elusive due to the scarcity of the available Miocene fossil record. Until recently, the genus Ailurarctos from the Late Miocene of China (ca. 8–7 mya) was recognized as the oldest undoubted member of the Ailuropodinae, suggesting that the panda lineage might have originated from an Ursavus ancestor. -
Master Universitario En Paleobiología Y Registro Fósil / Paleobiology and Fossil Record
MASTER UNIVERSITARIO EN PALEOBIOLOGÍA Y REGISTRO FÓSIL / PALEOBIOLOGY AND FOSSIL RECORD UNIVERSITAT AUTÒNOMA DE BARCELONA UNIVERSITAT DE BARCELONA Febrer 2018 1 1. DESCRIPCIÓN DEL TÍTULO 1.1 Denominación Denominación del título: Paleobiología y registro fósil/ Paleobiology and fossil record Especialidades: sin especialidades Créditos totales: 60 Rama de adscripción: Ciencias ISCED 1: Geología y Meteorología ISCED 2: Biología y Bioquímica 1.2 Universidad y centro solicitante: Universidad: Universitat Autònoma de Barcelona Centro: Facultad de Ciencias Universidad: Universidad de Barcelona Centro: Facultad de Ciencias de la Tierra Institut Català de Paleontologia. 1.3 Número de plazas de nuevo ingreso y tipo de enseñanza: Número de plazas de nuevo ingreso 2017/2018: 25 Número de plazas de nuevo ingreso 2018/2019: 25 Tipo de enseñanza: Presencial 1.4 Criterios y requisitos de matriculación Número mínimo y máximo de créditos de matrícula: Máster de 60 Tiempo completo Tiempo parcial créditos Mat.mínima Mat.máxima Mat.mínima Mat.máxima 1r curso 60 60 30 42 Resto de cursos 0 0 30 42 Normativa de permanencia 1.5 Resto de información necesaria para la expedición del Suplemento Europeo del Título No corresponde Profesiones a las que capacita No corresponde Lenguas utilizadas en el proceso formativo Inglés (85%), castellano (15%). 2 2. JUSTIFICACIÓN 2.1 Justificación del título propuesto, argumentando el interés académico, científico y profesional del mismo Este máster tiene sus antecedentes, en cuanto a temática y parte del profesorado, en el antiguo ‘Master en Paleontología’ que estaba muy dirigido a estudios sistemáticos y taxonómicos de los grupos tanto de plantas como de animales fósiles. La nueva propuesta incorpora conceptos que han tenido un gran desarrollo reciente en el campo de la biología (modelización ecológica, morfometría geométrica, paleofisiología, paleogenética, paleodemografía etc.) para proporcionar un enfoque más paleobiológico al registro fósil. -
Global Entomologies: Insects, Empires, and the ‘Synthetic Age’ *
Downloaded from http://past.oxfordjournals.org/ at Amherst College Library, Serials Section on October 31, 2013 , new edn charts in the 1 The Last Loop of the * Billboard ThePastandPresentSociety,Oxford,2013 I Oriental Rugs Today: A Guide to the Best New ß lu and Oktay Aslanapa, d o ´ (Istanbul, 2006). On the different materials used in lmecid I (1839–61) founded the Hereke ¨ Ella Fitzgerald: A Biography of the First Lady of Jazz British Military Spectacle: From the Napoleonic Wars through the , 2nd edn (Berkeley, 2003), 80; for more on the Hereke Imperial IN WORLD HISTORY (2013) (Cambridge, Mass., 1996), 68. Stuart Nicholson, GLOBAL ENTOMOLOGIES: INSECTS, A trio of more incongruous events, spanning three centuries, * Thanks to Nina Gordon, Steven Gray, Hannah Greenwald, Ken Kopp, Tricia 1 EMPIRES, AND THE ‘SYNTHETIC AGE’ doi:10.1093/pastj/gtt026 In November 1944, Decca RecordsElla released Fitzgerald an and album The Ink featuring Spots.‘I’m The Making two Believe’ tracks and on ‘Into the Eachspent record, Life seventeen Some Rain weeks Must at Fall’, United the States top and oftween inaugurated the the ‘First a Lady long-termMilt of collaboration Song’ Gabler. and be- Ottoman the A Sultan fabled Abdu century record producer before this musical milestone, the (New York, 1995), 81. EmmettCarpets Eiland, from the East Carpet Manufacture, see Ayt¸eFazly Past and Present Lipton, Benjamin Madley, JerryPeterson, Melillo, Khary Lalise Polk, Melillo, Elizabeth Michaelearlier Pryor O’Connor, versions and of Dawn this Theodore article. Waddelow for their input on might seem difficult totonishing imagine, feature. They yet depended these on the episodes tremendous share productive an as- Imperial Carpet Manufacture tohis produce Palace elaborate Dolmabahc¸e on silk the rugs Seagant for of carpets, Marmara. -
A Late Miocene Ursavus Skull from Guanghe, Gansu, China
-302 第52卷 第3期 古 脊 椎 动 物 学 报 pp. 265 2014年7月 VERTEBRATA PALASIATICA figs. 1-9 A Late Miocene Ursavus skull from Guanghe, Gansu, China QIU Zhan-Xiang DENG Tao WANG Ban-Yue (Key Laboratory of Vertebrate Evolution and Human Origins of Chinese Academy of Sciences, Institute of Vertebrate Paleontology and Paleoanthropology, Chinese Academy of Sciences Beijing 100044 [email protected]) Abstract An almost complete Ursavus skull in association with its mandible is described. The skull was recently found from upper part of Liushu Formation in Linxia Basin. Its stratigraphic level and geologic age are correlated to the late Bahean ALMA/S, ~8 Ma. It represents a new species, here named Ursavus tedfordi. Cladistic analysis is conducted using the TNT software, based on a matrix of 11 taxa and 37 characters. The tree 5 of the 8 most parsimonious trees is chosen as the most reliable to reflect the phylogenetic history of the ursid clade. As the tree 5 shows, after divergence from the Oligocene-Early Miocene hemicyonids (Cephalogale), the ursid clade first yielded two stem-taxa: Ballusia elmensis and B. orientalis, the latter of which being an aberrant branch. Then, two major subclades emerged: one comprising Kretzoiarctos, Agriarctos and Ailurarctos, the other containing all Ursavus species and their descendants including all living bears (excluding Ailuropoda). Kretzoiarctos may not be the direct ancestral form of the giant panda as Abella and colleagues (2012) suggested, but the ancestral form of the lineage of Indarctos (+Agriotherium ?). Among the numerous Ursavus species, U. tedfordi is the most advanced and closest related to the living bears (excluding Ailuropoda) in morphology, however, might belong to a side-branch, judging by the autapomorphies possessed by it. -
Icp Publications 2006-2021
ICP PUBLICATIONS 2006-2021 Last updated: 1 September 2021 In press and published online _______________________________________________________________________ SCI papers (indexed in JCR) 1. Abella, J., Martín-Perea, D. M., Valenciano, A., Hontecillas, D., Montoya, P., & Morales, J. (2021, published online). Coprolites in natural traps: direct evidence of bone eating carnivorans from the Late Miocene site of Batallones-3 (Madrid, Spain). Lethaia. https://doi.org/10.1111/let.12438 2. Agustí, J., Espresate, J., & Piñero, P. (2020, published in press). Dental variation in the endemic dormouse Hypnomys Bate 1918 and its implications for the palaeogeographic evolution of the Balearic Islands (Western Mediterranean) during the late Neogene-Quaternary. Historical Biology. https://doi.org/10.1080/08912963.2020.1852557 3. Alba, D. M., Robles, J. M., Valenciano, A., Abella, J., & Casanovas-Vilar, I. (2021, published online). A new species of Eomellivora from the latest Aragonian of Abocador de Can Mata (NE Iberian Peninsula). Historical Biology. https://doi.org/10.1080/08912963.2021.1943380 4. Arias-Martorell, J., Zeininger, A., & Kivell, T. L. (in press). Trabecular structure of the elbow reveals divergence in knuckle-walking biomechanical strategies of African apes. Evolution. 5. Bouchet, F., Urciuoli, A., Beaudet, A., Pina, M., Moyà-Solà, S., & Alba, D. M. (in press). Comparative anatomy of the carotid canal in the Miocene small-bodied catarrhine Pliobates cataloniae. Journal of Human Evolution. 6. Caballero, Ó., Montoya, P., Crespo, V. D., Morales, J., & Abella, J. (2020, published online). The autopodial skeleton of Paracamelus aguirrei (Morales 1984) (Tylopoda, Mammalia) from the late Miocene site of Venta del Moro (Valencia, Spain). Journal of Iberian Geology.