A Contribution to the Phylogeny and Taxonomy of Phlebiopsis (Polyporales, Basidiomycota)
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Major Clades of Agaricales: a Multilocus Phylogenetic Overview
Mycologia, 98(6), 2006, pp. 982–995. # 2006 by The Mycological Society of America, Lawrence, KS 66044-8897 Major clades of Agaricales: a multilocus phylogenetic overview P. Brandon Matheny1 Duur K. Aanen Judd M. Curtis Laboratory of Genetics, Arboretumlaan 4, 6703 BD, Biology Department, Clark University, 950 Main Street, Wageningen, The Netherlands Worcester, Massachusetts, 01610 Matthew DeNitis Vale´rie Hofstetter 127 Harrington Way, Worcester, Massachusetts 01604 Department of Biology, Box 90338, Duke University, Durham, North Carolina 27708 Graciela M. Daniele Instituto Multidisciplinario de Biologı´a Vegetal, M. Catherine Aime CONICET-Universidad Nacional de Co´rdoba, Casilla USDA-ARS, Systematic Botany and Mycology de Correo 495, 5000 Co´rdoba, Argentina Laboratory, Room 304, Building 011A, 10300 Baltimore Avenue, Beltsville, Maryland 20705-2350 Dennis E. Desjardin Department of Biology, San Francisco State University, Jean-Marc Moncalvo San Francisco, California 94132 Centre for Biodiversity and Conservation Biology, Royal Ontario Museum and Department of Botany, University Bradley R. Kropp of Toronto, Toronto, Ontario, M5S 2C6 Canada Department of Biology, Utah State University, Logan, Utah 84322 Zai-Wei Ge Zhu-Liang Yang Lorelei L. Norvell Kunming Institute of Botany, Chinese Academy of Pacific Northwest Mycology Service, 6720 NW Skyline Sciences, Kunming 650204, P.R. China Boulevard, Portland, Oregon 97229-1309 Jason C. Slot Andrew Parker Biology Department, Clark University, 950 Main Street, 127 Raven Way, Metaline Falls, Washington 99153- Worcester, Massachusetts, 01609 9720 Joseph F. Ammirati Else C. Vellinga University of Washington, Biology Department, Box Department of Plant and Microbial Biology, 111 355325, Seattle, Washington 98195 Koshland Hall, University of California, Berkeley, California 94720-3102 Timothy J. -
Phylogenetic Relationships of Rhizoctonia Fungi Within the Cantharellales
fungal biology 120 (2016) 603e619 journal homepage: www.elsevier.com/locate/funbio Phylogenetic relationships of Rhizoctonia fungi within the Cantharellales Dolores GONZALEZa,*, Marianela RODRIGUEZ-CARRESb, Teun BOEKHOUTc, Joost STALPERSc, Eiko E. KURAMAEd, Andreia K. NAKATANIe, Rytas VILGALYSf, Marc A. CUBETAb aInstituto de Ecologıa, A.C., Red de Biodiversidad y Sistematica, Carretera Antigua a Coatepec No. 351, El Haya, 91070 Xalapa, Veracruz, Mexico bDepartment of Plant Pathology, North Carolina State University, Center for Integrated Fungal Research, Campus Box 7251, Raleigh, NC 27695, USA cCBS Fungal Biodiversity Centre, Uppsalalaan 8, 3584 CT Utrecht, The Netherlands dDepartment of Microbial Ecology, Netherlands Institute of Ecology (NIOO/KNAW), Droevendaalsesteeg 10, 6708 PB Wageningen, The Netherlands eUNESP, Faculdade de Ci^encias Agronomicas,^ CP 237, 18603-970 Botucatu, SP, Brazil fDepartment of Biology, Duke University, Durham, NC 27708, USA article info abstract Article history: Phylogenetic relationships of Rhizoctonia fungi within the order Cantharellales were studied Received 2 January 2015 using sequence data from portions of the ribosomal DNA cluster regions ITS-LSU, rpb2, tef1, Received in revised form and atp6 for 50 taxa, and public sequence data from the rpb2 locus for 165 taxa. Data sets 1 January 2016 were analysed individually and combined using Maximum Parsimony, Maximum Likeli- Accepted 19 January 2016 hood, and Bayesian Phylogenetic Inference methods. All analyses supported the mono- Available online 29 January 2016 phyly of the family Ceratobasidiaceae, which comprises the genera Ceratobasidium and Corresponding Editor: Thanatephorus. Multi-locus analysis revealed 10 well-supported monophyletic groups that Joseph W. Spatafora were consistent with previous separation into anastomosis groups based on hyphal fusion criteria. -
Phylogenetic Classification of Trametes
TAXON 60 (6) • December 2011: 1567–1583 Justo & Hibbett • Phylogenetic classification of Trametes SYSTEMATICS AND PHYLOGENY Phylogenetic classification of Trametes (Basidiomycota, Polyporales) based on a five-marker dataset Alfredo Justo & David S. Hibbett Clark University, Biology Department, 950 Main St., Worcester, Massachusetts 01610, U.S.A. Author for correspondence: Alfredo Justo, [email protected] Abstract: The phylogeny of Trametes and related genera was studied using molecular data from ribosomal markers (nLSU, ITS) and protein-coding genes (RPB1, RPB2, TEF1-alpha) and consequences for the taxonomy and nomenclature of this group were considered. Separate datasets with rDNA data only, single datasets for each of the protein-coding genes, and a combined five-marker dataset were analyzed. Molecular analyses recover a strongly supported trametoid clade that includes most of Trametes species (including the type T. suaveolens, the T. versicolor group, and mainly tropical species such as T. maxima and T. cubensis) together with species of Lenzites and Pycnoporus and Coriolopsis polyzona. Our data confirm the positions of Trametes cervina (= Trametopsis cervina) in the phlebioid clade and of Trametes trogii (= Coriolopsis trogii) outside the trametoid clade, closely related to Coriolopsis gallica. The genus Coriolopsis, as currently defined, is polyphyletic, with the type species as part of the trametoid clade and at least two additional lineages occurring in the core polyporoid clade. In view of these results the use of a single generic name (Trametes) for the trametoid clade is considered to be the best taxonomic and nomenclatural option as the morphological concept of Trametes would remain almost unchanged, few new nomenclatural combinations would be necessary, and the classification of additional species (i.e., not yet described and/or sampled for mo- lecular data) in Trametes based on morphological characters alone will still be possible. -
Spelling out Jaapia Species
View metadata, citation and similar papers at core.ac.uk brought to you by CORE provided by Digital.CSIC Mycol Progress (2015) 14: 57 DOI 10.1007/s11557-015-1081-8 ORIGINAL ARTICLE Spelling out Jaapia species M. Teresa Telleria 1 & Margarita Dueñas1 & Ireneia Melo2 & Isabel Salcedo3 & María P. Martín1 Received: 23 March 2015 /Revised: 16 June 2015 /Accepted: 22 June 2015 /Published online: 9 July 2015 # German Mycological Society and Springer-Verlag Berlin Heidelberg 2015. This article is published with open access at Springerlink.com Abstract Jaapia is a wood-saprobic genus of corticioid fungi Keywords Basidiomycota . Agaricomycetes . Jaapiales . for which two species have been recognized: J. argillacea Corticioid fungi . Taxonomy . Barcoding . ITS . Bres. and J. ochroleuca (Bres.) Nannf. & J. Erikss. Whereas Morphological diagnostic characters the first one is easily recognized by its characteristic spores, the descriptions of the second indicated variable spores, which once led us to believe that J. ochroleuca could be a species Introduction complex rather than a single species. Eleven new ITS nrDNA sequences of J. ochroleuca were aligned with two obtained Jaapia was described by Bresadola (1911)toaccommodate from GenBank and four of J. argillacea. The molecular re- J. argillacea Bres., and for 20 years, this monotypic genus sults, parsimony analysis and KP2 distances clearly delimitate was accepted by several authors (von Höhnel 1912; Wakefield one highly supported Jaapia clade, with two subclades that and Pearson 1920; Bourdot and Galzin 1923, 1928; Rogers correspond to the two described species. Morphological stud- 1935). Nannfeldt and Eriksson (1953)consideredConiophora ies, including the holotype and isotype of J. -
Fungal Diversity in the Mediterranean Area
Fungal Diversity in the Mediterranean Area • Giuseppe Venturella Fungal Diversity in the Mediterranean Area Edited by Giuseppe Venturella Printed Edition of the Special Issue Published in Diversity www.mdpi.com/journal/diversity Fungal Diversity in the Mediterranean Area Fungal Diversity in the Mediterranean Area Editor Giuseppe Venturella MDPI • Basel • Beijing • Wuhan • Barcelona • Belgrade • Manchester • Tokyo • Cluj • Tianjin Editor Giuseppe Venturella University of Palermo Italy Editorial Office MDPI St. Alban-Anlage 66 4052 Basel, Switzerland This is a reprint of articles from the Special Issue published online in the open access journal Diversity (ISSN 1424-2818) (available at: https://www.mdpi.com/journal/diversity/special issues/ fungal diversity). For citation purposes, cite each article independently as indicated on the article page online and as indicated below: LastName, A.A.; LastName, B.B.; LastName, C.C. Article Title. Journal Name Year, Article Number, Page Range. ISBN 978-3-03936-978-2 (Hbk) ISBN 978-3-03936-979-9 (PDF) c 2020 by the authors. Articles in this book are Open Access and distributed under the Creative Commons Attribution (CC BY) license, which allows users to download, copy and build upon published articles, as long as the author and publisher are properly credited, which ensures maximum dissemination and a wider impact of our publications. The book as a whole is distributed by MDPI under the terms and conditions of the Creative Commons license CC BY-NC-ND. Contents About the Editor .............................................. vii Giuseppe Venturella Fungal Diversity in the Mediterranean Area Reprinted from: Diversity 2020, 12, 253, doi:10.3390/d12060253 .................... 1 Elias Polemis, Vassiliki Fryssouli, Vassileios Daskalopoulos and Georgios I. -
Identification and Tracking Activity of Fungus from the Antarctic Pole on Antagonistic of Aquatic Pathogenic Bacteria
INTERNATIONAL JOURNAL OF AGRICULTURE & BIOLOGY ISSN Print: 1560–8530; ISSN Online: 1814–9596 19F–079/2019/22–6–1311–1319 DOI: 10.17957/IJAB/15.1203 http://www.fspublishers.org Full Length Article Identification and Tracking Activity of Fungus from the Antarctic Pole on Antagonistic of Aquatic Pathogenic Bacteria Chuner Cai1,2,3, Haobing Yu1, Huibin Zhao2, Xiaoyu Liu1*, Binghua Jiao1 and Bo Chen4 1Department of Biochemistry and Molecular Biology, College of Basic Medicine, Naval Medical University, Shanghai, 200433, China 2College of Marine Ecology and Environment, Shanghai Ocean University, Shanghai, 201306, China 3Co-Innovation Center of Jiangsu Marine Bio-industry Technology, Lianyungang, Jiangsu, 222005, China 4Polar Research Institute of China, Shanghai, 200136, China *For correspondence: [email protected] Abstract To seek the lead compound with the activity of antagonistic aquatic pathogenic bacteria in Antarctica fungi, the work identified species of a previously collected fungus with high sensitivity to Aeromonas hydrophila ATCC7966 and Streptococcus agalactiae. Potential active compounds were separated from fermentation broth by activity tracking and identified in structure by spectrum. The results showed that this fungus had common characteristics as Basidiomycota in morphology. According to 18S rDNA and internal transcribed space (ITS) DNA sequencing, this fungus was identified as Bjerkandera adusta in family Meruliaceae. Two active compounds viz., veratric acid and erythro-1-(3, 5-dichlone-4- methoxyphenyl)-1, 2-propylene glycol were identified by nuclear magnetic resonance spectrum and mass spectrum. Veratric acid was separated for the first time from any fungus, while erythro-1-(3, 5-dichlone-4-methoxyphenyl)-1, 2-propylene glycol was once reported in Bjerkandera. -
Bibliotheksliste-Aarau-Dezember 2016
Bibliotheksverzeichnis VSVP + Nur im Leesesaal verfügbar, * Dissert. Signatur Autor Titel Jahrgang AKB Myc 1 Ricken Vademecum für Pilzfreunde. 2. Auflage 1920 2 Gramberg Pilze der Heimat 2 Bände 1921 3 Michael Führer für Pilzfreunde, Ausgabe B, 3 Bände 1917 3 b Michael / Schulz Führer für Pilzfreunde. 3 Bände 1927 3 Michael Führer für Pilzfreunde. 3 Bände 1918-1919 4 Dumée Nouvel atlas de poche des champignons. 2 Bände 1921 5 Maublanc Les champignons comestibles et vénéneux. 2 Bände 1926-1927 6 Negri Atlante dei principali funghi comestibili e velenosi 1908 7 Jacottet Les champignons dans la nature 1925 8 Hahn Der Pilzsammler 1903 9 Rolland Atlas des champignons de France, Suisse et Belgique 1910 10 Crawshay The spore ornamentation of the Russulas 1930 11 Cooke Handbook of British fungi. Vol. 1,2. 1871 12/ 1,1 Winter Die Pilze Deutschlands, Oesterreichs und der Schweiz.1. 1884 12/ 1,5 Fischer, E. Die Pilze Deutschlands, Oesterreichs und der Schweiz. Abt. 5 1897 13 Migula Kryptogamenflora von Deutschland, Oesterreich und der Schweiz 1913 14 Secretan Mycographie suisse. 3 vol. 1833 15 Bourdot / Galzin Hymenomycètes de France (doppelt) 1927 16 Bigeard / Guillemin Flore des champignons supérieurs de France. 2 Bände. 1913 17 Wuensche Die Pilze. Anleitung zur Kenntnis derselben 1877 18 Lenz Die nützlichen und schädlichen Schwämme 1840 19 Constantin / Dufour Nouvelle flore des champignons de France 1921 20 Ricken Die Blätterpilze Deutschlands und der angr. Länder. 2 Bände 1915 21 Constantin / Dufour Petite flore des champignons comestibles et vénéneux 1895 22 Quélet Les champignons du Jura et des Vosges. P.1-3+Suppl. -
9B Taxonomy to Genus
Fungus and Lichen Genera in the NEMF Database Taxonomic hierarchy: phyllum > class (-etes) > order (-ales) > family (-ceae) > genus. Total number of genera in the database: 526 Anamorphic fungi (see p. 4), which are disseminated by propagules not formed from cells where meiosis has occurred, are presently not grouped by class, order, etc. Most propagules can be referred to as "conidia," but some are derived from unspecialized vegetative mycelium. A significant number are correlated with fungal states that produce spores derived from cells where meiosis has, or is assumed to have, occurred. These are, where known, members of the ascomycetes or basidiomycetes. However, in many cases, they are still undescribed, unrecognized or poorly known. (Explanation paraphrased from "Dictionary of the Fungi, 9th Edition.") Principal authority for this taxonomy is the Dictionary of the Fungi and its online database, www.indexfungorum.org. For lichens, see Lecanoromycetes on p. 3. Basidiomycota Aegerita Poria Macrolepiota Grandinia Poronidulus Melanophyllum Agaricomycetes Hyphoderma Postia Amanitaceae Cantharellales Meripilaceae Pycnoporellus Amanita Cantharellaceae Abortiporus Skeletocutis Bolbitiaceae Cantharellus Antrodia Trichaptum Agrocybe Craterellus Grifola Tyromyces Bolbitius Clavulinaceae Meripilus Sistotremataceae Conocybe Clavulina Physisporinus Trechispora Hebeloma Hydnaceae Meruliaceae Sparassidaceae Panaeolina Hydnum Climacodon Sparassis Clavariaceae Polyporales Gloeoporus Steccherinaceae Clavaria Albatrellaceae Hyphodermopsis Antrodiella -
Notes on Lopharia Mirabilis (Berk. & Broome) Pat. in China
Fung. Sci. 17(1, 2): 31–38, 2002 Notes on Lopharia mirabilis (Berk. & Broome) Pat. in China Yu-Cheng Dai* Institute of Applied Ecology, Chinese Academy of Sciences, Shenyang 110016, China (Accepted May 2, 2002) ABSTRACT Lopharia mirabilis was re-collected from Northeast and Southwest China. The species was poorly known in China, and it was earlier known as Licentia yaochanica from Shanxi Province only. Its emended description is given based on the new collections and previous material. Specimens of the species from China, India, Ja- pan and Thailand are studied. The fungus is characterized by resupinate basidiocarps, irregularly poroid to irpicoid and partly labyrinthine hymenophore, dimitic hyphal system, dextrinoid and cyanophilous skeletal hyphae, prominent and distinctly amyloid cystidia, and ellipsoid basidiospores. The relationships between Lopharia and related genera are discussed. Key words: Basidiomycota, China, Lopharia mirabilis, taxonomy, wood-inhabiting fungi. Introduction and illustrations are presented here based on the type specimen of Licentia yaochanica, re- Lopharia mirabilis (Berk. & Broome) Pat. cent collections from China, and many other was re-collected from the temperate forest of specimens from India, Japan and Thailand. In Northeast China and subtropical forest of addition, specimens of Lopharia cinerascens Southwest China. The species was first re- from Kenya, Australia and New Zealand are ported in China as Licentia yaochanica Pilát studied, and relationships between Lopharia (Pilát, 1940). Over the past 60 years it has mirabilis and L. cinerascens are discussed. been cited by Tai (1979), but otherwise has remained almost forgotten in China. Boidin Materials and Methods (1960) treated Licentia as a synonym of Lo- pharia Kalch. -
Basidiomycota)
Mycol Progress DOI 10.1007/s11557-016-1210-z ORIGINAL ARTICLE Leifiporia rhizomorpha gen. et sp. nov. and L. eucalypti comb. nov. in Polyporaceae (Basidiomycota) Chang-Lin Zhao1 & Fang Wu1 & Yu-Cheng Dai1 Received: 21 March 2016 /Revised: 10 June 2016 /Accepted: 14 June 2016 # German Mycological Society and Springer-Verlag Berlin Heidelberg 2016 Abstract A new poroid wood-inhabiting fungal genus, Keywords Phylogenetic analysis . Polypores . Taxonomy . Leifiporia, is proposed, based on morphological and molecular Wood-rotting fungi evidence, which is typified by L. rhizomorpha sp. nov. The genus is characterized by an annual growth habit, resupinate basidiocarps with white to cream pore surface, a dimitic hyphal Introduction system with generative hyphae bearing clamp connections and branching mostly at right angles, skeletal hyphae present in the Polypores are a very important group of wood-inhabiting fungi subiculum only and distinctly thinner than generative hyphae, which have been extensively studied Among them, the IKI–,CB–, and ellipsoid, hyaline, thin-walled, smooth, IKI–, Polyporaceae is a diverse group of Polyporales, including spe- CB– basidiospores. Sequences of ITS and LSU nrRNA gene cies having annual to perennial, resupinate, pileate and stipitate regions of the studied samples were generated, and phyloge- basidiocarps, a monomitic to dimitic or trimitic hyphal structure netic analyses were performed with maximum likelihood, max- with simple septa or clamp connections on generative hyphae, imum parsimony and Bayesian inference methods. The phylo- and thin- to thick-walled, smooth to ornamented, cyanophilous genetic analysis based on molecular data of ITS + nLSU se- to acyanophilous basidiospores (Ryvarden and Johansen 1980; quences showed that Leifiporia belonged to the core Gilbertson and Ryvarden 1986, 1987;Dai2012; Ryvarden and polyporoid clade and was closely related to Diplomitoporus Melo 2014). -
80130Dimou7-107Weblist Changed
Posted June, 2008. Summary published in Mycotaxon 104: 39–42. 2008. Mycodiversity studies in selected ecosystems of Greece: IV. Macrofungi from Abies cephalonica forests and other intermixed tree species (Oxya Mt., central Greece) 1 2 1 D.M. DIMOU *, G.I. ZERVAKIS & E. POLEMIS * [email protected] 1Agricultural University of Athens, Lab. of General & Agricultural Microbiology, Iera Odos 75, GR-11855 Athens, Greece 2 [email protected] National Agricultural Research Foundation, Institute of Environmental Biotechnology, Lakonikis 87, GR-24100 Kalamata, Greece Abstract — In the course of a nine-year inventory in Mt. Oxya (central Greece) fir forests, a total of 358 taxa of macromycetes, belonging in 149 genera, have been recorded. Ninety eight taxa constitute new records, and five of them are first reports for the respective genera (Athelopsis, Crustoderma, Lentaria, Protodontia, Urnula). One hundred and one records for habitat/host/substrate are new for Greece, while some of these associations are reported for the first time in literature. Key words — biodiversity, macromycetes, fir, Mediterranean region, mushrooms Introduction The mycobiota of Greece was until recently poorly investigated since very few mycologists were active in the fields of fungal biodiversity, taxonomy and systematic. Until the end of ’90s, less than 1.000 species of macromycetes occurring in Greece had been reported by Greek and foreign researchers. Practically no collaboration existed between the scientific community and the rather few amateurs, who were active in this domain, and thus useful information that could be accumulated remained unexploited. Until then, published data were fragmentary in spatial, temporal and ecological terms. The authors introduced a different concept in their methodology, which was based on a long-term investigation of selected ecosystems and monitoring-inventorying of macrofungi throughout the year and for a period of usually 5-8 years. -
New Records of Polypores from Iran, with a Checklist of Polypores for Gilan Province
CZECH MYCOLOGY 68(2): 139–148, SEPTEMBER 27, 2016 (ONLINE VERSION, ISSN 1805-1421) New records of polypores from Iran, with a checklist of polypores for Gilan Province 1 2 MOHAMMAD AMOOPOUR ,MASOOMEH GHOBAD-NEJHAD *, 1 SEYED AKBAR KHODAPARAST 1 Department of Plant Protection, Faculty of Agricultural Sciences, University of Gilan, P.O. Box 41635-1314, Rasht 4188958643, Iran. 2 Department of Biotechnology, Iranian Research Organization for Science and Technology (IROST), P.O. Box 3353-5111, Tehran 3353136846, Iran; [email protected] *corresponding author Amoopour M., Ghobad-Nejhad M., Khodaparast S.A. (2016): New records of polypores from Iran, with a checklist of polypores for Gilan Province. – Czech Mycol. 68(2): 139–148. As a result of a survey of poroid basidiomycetes in Gilan Province, Antrodiella fragrans, Ceriporia aurantiocarnescens, Oligoporus tephroleucus, Polyporus udus,andTyromyces kmetii are newly reported from Iran, and the following seven species are reported as new to this province: Coriolopsis gallica, Fomitiporia punctata, Hapalopilus nidulans, Inonotus cuticularis, Oligo- porus hibernicus, Phylloporia ribis,andPolyporus tuberaster. An updated checklist of polypores for Gilan Province is provided. Altogether, 66 polypores are known from Gilan up to now. Key words: fungi, hyrcanian forests, poroid basidiomycetes. Article history: received 28 July 2016, revised 13 September 2016, accepted 14 September 2016, published online 27 September 2016. Amoopour M., Ghobad-Nejhad M., Khodaparast S.A. (2016): Nové nálezy chorošů pro Írán a checklist chorošů provincie Gilan. – Czech Mycol. 68(2): 139–148. Jako výsledek systematického výzkumu chorošotvarých hub v provincii Gilan jsou publikovány nové druhy pro Írán: Antrodiella fragrans, Ceriporia aurantiocarnescens, Oligoporus tephroleu- cus, Polyporus udus a Tyromyces kmetii.