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Zootaxa, Integrative Taxonomy of Malagasy Treefrogs
Zootaxa 2383: 1–82 (2010) ISSN 1175-5326 (print edition) www.mapress.com/zootaxa/ Monograph ZOOTAXA Copyright © 2010 · Magnolia Press ISSN 1175-5334 (online edition) ZOOTAXA 2383 Integrative taxonomy of Malagasy treefrogs: combination of molecular genetics, bioacoustics and comparative morphology reveals twelve additional species of Boophis FRANK GLAW1, 5, JÖRN KÖHLER2, IGNACIO DE LA RIVA3, DAVID R. VIEITES3 & MIGUEL VENCES4 1Zoologische Staatssammlung München, Münchhausenstr. 21, 81247 München, Germany 2Department of Natural History, Hessisches Landesmuseum Darmstadt, Friedensplatz 1, 64283 Darmstadt, Germany 3Museo Nacional de Ciencias Naturales-Consejo Superior de Investigaciones Científicas (CSIC), C/ José Gutiérrez Abascal 2, 28006 Madrid, Spain 4Zoological Institute, Technical University of Braunschweig, Spielmannstr. 8, 38106 Braunschweig, Germany 5Corresponding author. E-mail: [email protected] Magnolia Press Auckland, New Zealand Accepted by S. Castroviejo: 8 Dec. 2009; published: 26 Feb. 2010 Frank Glaw, Jörn Köhler, Ignacio De la Riva, David R. Vieites & Miguel Vences Integrative taxonomy of Malagasy treefrogs: combination of molecular genetics, bioacoustics and com- parative morphology reveals twelve additional species of Boophis (Zootaxa 2383) 82 pp.; 30 cm. 26 February 2010 ISBN 978-1-86977-485-1 (paperback) ISBN 978-1-86977-486-8 (Online edition) FIRST PUBLISHED IN 2010 BY Magnolia Press P.O. Box 41-383 Auckland 1346 New Zealand e-mail: [email protected] http://www.mapress.com/zootaxa/ © 2010 Magnolia Press All rights reserved. No part of this publication may be reproduced, stored, transmitted or disseminated, in any form, or by any means, without prior written permission from the publisher, to whom all requests to reproduce copyright material should be directed in writing. -
Correlates of Eye Colour and Pattern in Mantellid Frogs
SALAMANDRA 49(1) 7–17 30Correlates April 2013 of eyeISSN colour 0036–3375 and pattern in mantellid frogs Correlates of eye colour and pattern in mantellid frogs Felix Amat 1, Katharina C. Wollenberg 2,3 & Miguel Vences 4 1) Àrea d‘Herpetologia, Museu de Granollers-Ciències Naturals, Francesc Macià 51, 08400 Granollers, Catalonia, Spain 2) Department of Biology, School of Science, Engineering and Mathematics, Bethune-Cookman University, 640 Dr. Mary McLeod Bethune Blvd., Daytona Beach, FL 32114, USA 3) Department of Biogeography, Trier University, Universitätsring 15, 54286 Trier, Germany 4) Zoological Institute, Division of Evolutionary Biology, Technical University of Braunschweig, Spielmannstr. 8, 38106 Braunschweig, Germany Corresponding author: Miguel Vences, e-mail: [email protected] Manuscript received: 18 March 2013 Abstract. With more than 250 species, the Mantellidae is the most species-rich family of frogs in Madagascar. These frogs are highly diversified in morphology, ecology and natural history. Based on a molecular phylogeny of 248 mantellids, we here examine the distribution of three characters reflecting the diversity of eye colouration and two characters of head colouration along the mantellid tree, and their correlation with the general ecology and habitat use of these frogs. We use Bayesian stochastic character mapping, character association tests and concentrated changes tests of correlated evolu- tion of these variables. We confirm previously formulated hypotheses of eye colour pattern being significantly correlated with ecology and habits, with three main character associations: many tree frogs of the genus Boophis have a bright col- oured iris, often with annular elements and a blue-coloured iris periphery (sclera); terrestrial leaf-litter dwellers have an iris horizontally divided into an upper light and lower dark part; and diurnal, terrestrial and aposematic Mantella frogs have a uniformly black iris. -
Larval Morphology and Development of the Malagasy Frog Mantidactylus Betsileanus
SALAMANDRA 49(4) 186–200 30 December 2013Sarah ScheldISSN 0036–3375 et al. Larval morphology and development of the Malagasy frog Mantidactylus betsileanus Sarah Scheld 1,2,4, R. G. Bina Perl 1,2,3, Anna Rauhaus 1, Detlef Karbe 1, Karin van der Straeten 1, J. Susanne Hauswaldt 3, Roger Daniel Randrianiaina 3, Anna Gawor 1, Miguel Vences 3 & Thomas Ziegler 1,2 1) Cologne Zoo, Riehler Str. 173, 50735 Köln, Germany 2) Cologne Biocenter, University of Cologne, Zülpicher Str. 47b, 50674 Köln, Germany 3) Zoological Institute, Technical University of Braunschweig, Mendelssohnstr. 4, 38106 Braunschweig, Germany 4) Institute of Ecology, University of Innsbruck, Technikerstr. 25, 6020 Innsbruck, Austria Corresponding author: Thomas Ziegler, e-mail: [email protected] Manuscript received: 21 September 2013 Abstract. The Mantellidae is a species-rich family of neobatrachian frogs endemic to Madagascar and Mayotte. Although tadpoles have been described from many mantellids, detailed studies of their early embryonic development are rare. We provide a documentation of the developmental stages of Mantidactylus betsileanus, a common mantellid frog of Madagas- car’s eastern rainforests, based on clutches deposited and raised in captivity. Metamorphosis was completed after 89 days on average. External gills were not recognizable in the embryos, similar to three other, previously studied mantellids, which apparently constitutes a difference to the mantellid sister group, the Rhacophoridae. We also provide updated de- scriptions of the species’ larval morphology at stage 25 and stage 36, respectively, from captive bred and wild-caught indi- viduals, and report variations in the keratodont row formula from 0/2, 1/1, 1/3 to 1:1+1/3. -
CO1 DNA Barcoding Amphibians: Take the Chance, Meet the Challenge
Molecular Ecology Resources (2008) 8, 235–246 doi: 10.1111/j.1471-8286.2007.01964.x DNABlackwell Publishing Ltd BARCODING CO1 DNA barcoding amphibians: take the chance, meet the challenge M. ALEX SMITH,* NIKOLAI A. POYARKOV JR† and PAUL D. N. HEBERT* *Biodiversity Institute of Ontario, University of Guelph, Guelph, Ontario, Canada N1G 2W1, †Department of Vertebrate Zoology, Biological Faculty, Lomonosov Moscow State University, Moscow 119121, Russia Abstract Although a mitochondrial DNA barcode has been shown to be of great utility for species identification and discovery in an increasing number of diverse taxa, caution has been urged with its application to one of the most taxonomically diverse vertebrate groups — the amphibians. Here, we test three of the perceived shortcomings of a CO1 DNA barcode’s utility with a group of Holarctic amphibians: primer fit, sequence variability and overlapping intra- and interspecific variability. We found that although the CO1 DNA barcode priming regions were variable, we were able to reliably amplify a CO1 fragment from degenerate primers and primers with G-C residues at the 3′ end. Any overlap between intra- and inter- specific variation in our taxonomic sampling was due to introgressive hybridization (Bufo/ Anaxyrus), complex genetics (Ambystoma) or incomplete taxonomy (Triturus). Rates of hybridization and species discovery are not expected to be greater for amphibians than for other vertebrate groups, and thus problems with the utility of using a single mitochondrial gene for species identification will not be specific to amphibians. Therefore, we conclude that there is greater potential for a CO1 barcode’s use with amphibians than has been reported to date. -
Biodiversity Hotspots: Distribution and Protection of Conservation Priority Areas
Biodiversity Hotspots . Frank E. Zachos l Jan Christian Habel Editors Biodiversity Hotspots Distribution and Protection of Conservation Priority Areas - - Editors Dr. habil. Jan Christian Habel Dr. habil. Frank E. Zachos Muse´e National d´Histoire Naturelle Naturhistorisches Museum Wien Luxembourg Mammal Collection 25, rue Mu¨nster Burgring 7 2160 Luxembourg, Luxembourg 1010 Vienna, Austria [email protected] [email protected] ISBN 978-3-642-20991-8 e-ISBN 978-3-642-20992-5 DOI 10.1007/978-3-642-20992-5 Springer Heidelberg Dordrecht London New York Library of Congress Control Number: 2011936795 # Springer-Verlag Berlin Heidelberg 2011 This work is subject to copyright. All rights are reserved, whether the whole or part of the material is concerned, specifically the rights of translation, reprinting, reuse of illustrations, recitation, broadcasting, reproduction on microfilm or in any other way, and storage in data banks. Duplication of this publication or parts thereof is permitted only under the provisions of the German Copyright Law of September 9, 1965, in its current version, and permission for use must always be obtained from Springer. Violations are liable to prosecution under the German Copyright Law. The use of general descriptive names, registered names, trademarks, etc. in this publication does not imply, even in the absence of a specific statement, that such names are exempt from the relevant protective laws and regulations and therefore free for general use. Cover illustrations: Front cover: Coral reefs are among the most diverse habitats on the planet. The front cover photograph was taken by Jonas Thormar in the Red Sea and shows a bombora, or isolated piece of reef, near Eilat, Israel. -
Larval Systematics of the Peninsular Malaysian Ranidae (Amphibia: Anura)
LARVAL SYSTEMATICS OF THE PENINSULAR MALAYSIAN RANIDAE (AMPHIBIA: ANURA) LEONG TZI MING NATIONAL UNIVERSITY OF SINGAPORE 2005 LARVAL SYSTEMATICS OF THE PENINSULAR MALAYSIAN RANIDAE (AMPHIBIA: ANURA) LEONG TZI MING B.Sc. (Hons.) A THESIS SUBMITTED FOR THE DEGREE OF DOCTOR OF PHILOSOPHY DEPARTMENT OF BIOLOGICAL SCIENCES THE NATIONAL UNIVERSITY OF SINGAPORE 2005 This is dedicated to my dad, mum and brothers. i ACKNOWLEDGEMENTS I am grateful to the many individuals and teams from various institutions who have contributed to the completion of this thesis in various avenues, of which encouragement was the most appreciated. They are, not in any order of preference, from the National University of Singapore (NUS): A/P Peter Ng, Tan Heok Hui, Kelvin K. P. Lim, Darren C. J. Yeo, Tan Swee Hee, Daisy Wowor, Lim Cheng Puay, Malcolm Soh, Greasi Simon, C. M. Yang, H. K. Lua, Wang Luan Keng, C. F. Lim, Yong Ann Nee; from the National Parks Board (Singapore): Lena Chan, Sharon Chan; from the Nature Society (Singapore): Subaraj Rajathurai, Andrew Tay, Vilma D’Rozario, Celine Low, David Teo, Rachel Teo, Sutari Supari, Leong Kwok Peng, Nick Baker, Tony O’Dempsey, Linda Chan; from the Wildlife Department (Malaysia): Lim Boo Liat, Sahir bin Othman; from the Forest Research Institute of Malaysia (FRIM): Norsham Yaakob, Terry Ong, Gary Lim; from WWF (Malaysia): Jeet Sukumaran; from the Economic Planning Unit, Malaysia (EPU): Puan Munirah; from the University of Sarawak (UNIMAS): Indraneil Das; from the National Science Museum, Thailand: Jairujin Nabhitabhata, Tanya Chan-ard, Yodchaiy Chuaynkern; from the University of Kyoto: Masafumi Matsui; from the University of the Ryukyus: Hidetoshi Ota; from my Indonesian friends: Frank Bambang Yuwono, Ibu Mumpuni (MZB), Djoko Iskandar (ITB); from the Philippine National Museum (PNM): Arvin C. -
Vences B131.Pdf
andreone update:•5-12 Pessani 31-10-2008 17:08 Pagina 419 A Conservation Strategy for the Monografie del Museo Regionale di Scienze Naturali Amphibians of Madagascar di Torino, XLV (2008): pp. 419-438 Franco ANDREONE1, Neil A. COX2, Frank GLAW3, Jörn KÖHLER4, Nirhy H. C. RABIBISOA5, Herilala RANDRIAMAHAZO6, Harison RANDRIANASOLO5, Christopher J. RAXWORTHY7, Simon N. STUART2, Denis VALLAN8, Miguel VENCES9 Update of the Global Amphibian Assessment for Madagascar in light of species discoveries, nomenclature changes, and new field information ABSTRACT We updated the Global Amphibian Assessment for Malagasy amphibians, including considerations on the species described or resurrected between 2005-2007, and newly available information on other taxa. The revised assessment allowed us to include 66 threatened species: 6 Critically Endangered, 31 Endangered, and 29 Vulnerable. Three species formerly assessed as Critically Endangered (Mantella expectata, M. viridis, and Scaphiophryne gottlebei) are downlisted to Endangered, since they are more widespread than formerly presumed. Other recently described species have been assessed as threatened: seven are categorised as Endangered (Boophis tampoka, Gephyromantis azzurrae, G. runewsweeki, Mantidactylus noralottae, Tsingymantis antitra, Cophyla berara, and Plethodontohyla fonetana), and a single species (Boophis sambirano) categorised as Vulnerable. The little known and enigmatic Mantella manery, formerly assessed as Data Deficient, has been recently found on the Tsaratanana Massif. In view of this enlarged distribution and ongoing degradation of the habitats where it lives, it has been re-assessed as Vulnerable. Key words: Amphibians, Conservation, Global Amphibian Assessment, Madagascar, New assessment. 1 Museo Regionale di Scienze Naturali, Torino. 2 Center for Applied Biodiversity Science, Washington. 3 Zoologische Staatssammlung München. -
From Specimens to the Tree-Of-Life: Tackling Tropical Arthropod Diversity
FROM SPECIMENS TO THE TREE-OF-LIFE: TACKLING TROPICAL ARTHROPOD DIVERSITY DARREN YEO B.Sc. (Hons), NUS A THESIS SUBMITTED FOR THE DEGREE OF DOCTOR OF PHILOSOPHY DEPARTMENT OF BIOLOGICAL SCIENCES NATIONAL UNIVERSITY OF SINGAPORE AND DEPARTMENT OF LIFE SCIENCES IMPERIAL COLLEGE LONDON 2018 Supervisors: Professor Rudolf Meier, Main Supervisor Professor Alfried P. Vogler, Co-Supervisor Examiners: Assistant Professor Huang Danwei Dr. Thomas Bell Professor Dalton De Souza Amorim i Declaration I hereby declare that this thesis is my original work and it has been written by me in its entirety. I have duly acknowledged all the sources of information which have been used in the thesis. This thesis has also not been submitted for any degree in any university previously. _____________________________ Darren Yeo 03 August 2018 The copyright of this thesis rests with the author and is made available under a Creative Commons Attribution Non-Commercial No Derivatives licence. Researchers are free to copy, distribute or transmit the thesis on the condition that they attribute it, that they do not use it for commercial purposes and that they do not alter, transform or build upon it. For any reuse or redistribution, researchers must make clear to others the licence terms of this work ii Acknowledgements I am deeply grateful towards the following people, without whom this thesis would not have been possible: Prof. Rudolf Meier, who has had the central role in shaping my growth as a researcher, student and teacher. Thank you for always being supportive, conscientious and patient with me throughout my PhD studies. I am truly thankful to have a supervisor both passionate and well-versed in this field, who is able to spark and nurture my interest for entomology and molecular biology. -
(DEA) Rofondies
UNIVERSITE D’ANTANANARIVO FACULTE DES SCIENCES DEPARTEMENT DE BIOLOGIE ANIMALE DEPARTEMENT DE BIOLOGIE ANIMALE Latimeria chalumnae MEMOIRE POUR L’OBTENTION DU Diplôme d ’Etudes Approfondies (D.E.A.) Formation Doctorale : Sciences de la vie Option : Biologie, Ecologie et Conservation Animales ETUDE PHENOLOGIQUE D’ Anodonthyla montana Angel, 1925 et de Mantidactylus madecassus (Millot & Guibé, 1950) , AMPHIBIENS ENDEMIQUES DU HAUT MASSIF D’ANDRINGITRA Présenté par : Madame FALIARISOA Edwige Devant le JURY composé de : Président : Mada me Noromalala RASOAMAMPIONONA RAMINOSOA (Professeur) Rapporteur : Monsieu r. Achille Philipe RASELIMANANA (Maître de Conférences) Examinateur(s) : - Mada me Marie Jeanne RAHERILALAO (Maître de Conférences) - Mada me Jeanne RASAMY RAZANABOLANA (Maître de Conférences) Soutenu publiquement le : 29 avril 2011 UNIVERSITE D’ANTANANARIVO FACULTE DES SCIENCES DEPARTEMENT DE BIOLOGIE ANIMALE DEPARTEMENT DE BIOLOGIE ANIMALE Latimeria chalumnae MEMOIRE POUR L’OBTENTION DU Diplôme d ’Etudes Approfondies (D.E.A.) Formation Doctorale : Sciences de la vie Option : Biologie, Ecologie et Conservation Animales ETUDE PHENOLOGIQUE D’ Anodonthyla montana Angel, 1925 et de Mantidactylus madecassus (Millot & Guibé, 1950) , AMPHIBIENS ENDEMIQUES DU HAUT MASSIF D’ANDRINGITRA Présenté par : Madame FALIARISOA Edwige Devant le JURY composé de : Président : Mada me Noromalala RASOAMAMPIONONA RAMINOSOA (Professeur) Rapporteur : Monsieu r. Achille Philipe RASELIMANANA (Maître de Conférences) Examinateur(s) : - Mada me Marie Jeanne RAHERILALAO -
Haute Matsiatra)
Zoosyst. Evol. 97 (2) 2021, 315–343 | DOI 10.3897/zse.97.63936 Uncovering the herpetological diversity of small forest fragments in south-eastern Madagascar (Haute Matsiatra) Francesco Belluardo1, Darwin Díaz Quirós1, Javier Lobón-Rovira1, Gonçalo M. Rosa2,3, Malalatiana Rasoazanany4, Franco Andreone5, Angelica Crottini1,6 1 CIBIO Centro de Investigação em Biodiversidade e Recursos Genéticos, Universidade do Porto, Rua Padre Armando Quintas, Campus de Vairão, 4485–661, Vairão, Portugal 2 Institute of Zoology, Zoological Society of London, Outer Circle, Regent’s Park, NW1, 4RY, London, United Kingdom 3 Centre for Ecology, Evolution and Environmental Changes (CE3C), Faculdade de Ciências da Universidade de Lisboa, Campo Grande, Edifício C2, 5° Piso, Sala 2.5.46, 1749–016, Lisboa, Portugal 4 Mention Zoologie et Biodiversité Animal, Domaine des Sciences et Technologies, Université d’Antananarivo, B.P. 906, 101, Antananarivo, Madagascar 5 Museo Regionale di Scienze Naturali, Via G. Giolitti, 36, 10123, Torino, Italy 6 Departamento de Biologia, Faculdade de Ciências da Universidade do Porto, Rua Campo Alegre, 4169–007, Porto, Portugal http://zoobank.org/5381781A-2801-4240-9ACE-F53CE3264B70 Corresponding author: Francesco Belluardo ([email protected]) Academic editor: Johannes Penner ♦ Received 3 February 2021 ♦ Accepted 20 May 2021 ♦ Published 1 July 2021 Abstract Madagascar has historically suffered from high fragmentation of forested habitats, often leading to biodiversity loss. Neverthless, forest fragments still retain high levels of biological diversity. The Haute Matsiatra Region (south-eastern Madagascar) hosts the renowned Andringitra National Park and several surrounding isolated forest fragments embedded in a matrix of human-dominated landscape. During a herpetological survey conducted in the Region, we visited a total of 25 sites. -
Deciphering Amphibian Diversity Through DNA Barcoding: Chances and Challenges Miguel Vences1,*, Meike Thomas2, Ronald M
Phil. Trans. R. Soc. B (2005) 360, 1859–1868 doi:10.1098/rstb.2005.1717 Published online 14 September 2005 Deciphering amphibian diversity through DNA barcoding: chances and challenges Miguel Vences1,*, Meike Thomas2, Ronald M. Bonett3 and David R. Vieites3 1Institute for Biodiversity and Ecosystem Dynamics, Zoological Museum, University of Amsterdam, Mauritskade 61, 1092 AD Amsterdam, The Netherlands 2Department of Genetics, University of Cologne, Zu¨lpicher Strasse 47, 50674 Cologne, Germany 3Museum of Vertebrate Zoology and Department of Integrative Biology, University of California, 3101 Valley Life Sciences Building, Berkeley, CA 94720-3160, USA Amphibians globally are in decline, yet there is still a tremendous amount of unrecognized diversity, calling for an acceleration of taxonomic exploration. This process will be greatly facilitated by a DNA barcoding system; however, the mitochondrial population structure of many amphibian species presents numerous challenges to such a standardized, single locus, approach. Here we analyse intra- and interspecific patterns of mitochondrial variation in two distantly related groups of amphibians, mantellid frogs and salamanders, to determine the promise of DNA barcoding with cytochrome oxidase subunit I (cox1) sequences in this taxon. High intraspecific cox1 divergences of 7–14% were observed (18% in one case) within the whole set of amphibian sequences analysed. These high values are not caused by particularly high substitution rates of this gene but by generally deep mitochondrial divergences within and among amphibian species. Despite these high divergences, cox1 sequences were able to correctly identify species including disparate geographic variants. The main problems with cox1 barcoding of amphibians are (i) the high variability of priming sites that hinder the application of universal primers to all species and (ii) the observed distinct overlap of intraspecific and interspecific divergence values, which implies difficulties in the definition of threshold values to identify candidate species. -
Diversity, External Morphology and ‘Reverse Taxonomy’ in the Specialized Tadpoles of Malagasy River Bank Frogs of the Subgenus Ochthomantis (Genus Mantidactylus)
Contributions to Zoology, 80 (1) 17-65 (2011) Diversity, external morphology and ‘reverse taxonomy’ in the specialized tadpoles of Malagasy river bank frogs of the subgenus Ochthomantis (genus Mantidactylus) Roger-Daniel Randrianiaina1, 2, 5, Axel Strauß1, Julian Glos3, Frank Glaw4, Miguel Vences1 1 Division of Evolutionary Biology, Zoological Institute, Technical University of Braunschweig, Spielmannstr. 8, 38106 Braunschweig, Germany 2 Département de Biologie Animale, Université d’Antananarivo, BP 906, Antananarivo 101, Madagascar 3 Zoological Institute, University of Hamburg, Martin-Luther-King Platz 3, 20146 Hamburg, Germany 4 Zoologische Staatssammlung München, Münchhausenstr. 21, 81247 München, Germany 5 E-mail: [email protected] Key words: Amphibia, Mantellidae, Madagascar, tadpole morphology, DNA barcoding. Abstract Contents We provide detailed morphological descriptions of the tadpoles Introduction ...................................................................................... 17 of Malagasy river bank frogs of the subgenera Ochthomantis Material and methods ..................................................................... 18 and Maitsomantis (genus Mantidactylus, family Mantellidae), Morphological study of tadpoles ........................................... 18 and data on relative abundance and habitat preferences of Och- Molecular analyses .................................................................. 19 thomantis species from Ranomafana National Park in south- Habitat preference analysis ..................................................