Diversity and Diversification Across the Global Radiation of Extant Bats by Jeff J. Shi A dissertation submitted in partial fulfillment of the requirements for the degree of Doctor of Philosophy (Ecology and Evolutionary Biology) in the University of Michigan 2018 Doctoral Committee: Professor Catherine Badgley, co-chair Assistant Professor and Assistant Curator Daniel Rabosky, co-chair Associate Professor Geoffrey Gerstner Associate Research Scientist Miriam Zelditch Kalong (Malay, traditional) Pteropus vampyrus (Linnaeus, 1758) Illustration by Gustav Mützel (Brehms Tierleben), 19271 1 Reproduced as a work in the public domain of the United States of America; accessible via the Wikimedia Commons repository. EPIGRAPHS “...one had to know the initial and final states to meet that goal; one needed knowledge of the effects before the causes could be initiated.” Ted Chiang; Story of Your Life (1998) “Dr. Eleven: What was it like for you, at the end? Captain Lonagan: It was exactly like waking up from a dream.” Emily St. John Mandel; Station Eleven (2014) Bill Watterson; Calvin & Hobbes (October 27, 1989)2 2 Reproduced according to the educational usage policies of, and direct correspondence with Andrews McMeel Syndication. © Jeff J. Shi 2018
[email protected] ORCID: 0000-0002-8529-7100 DEDICATION To the memory and life of Samantha Jade Wang. ii ACKNOWLEDGMENTS All of the research presented here was supported by a National Science Foundation (NSF) Graduate Research Fellowship, an Edwin H. Edwards Scholarship in Biology, and awards from the University of Michigan’s Rackham Graduate School and the Department of Ecology & Evolutionary Biology (EEB). A significant amount of computational work was funded by a Michigan Institute for Computational Discovery and Engineering fellowship; specimen scanning, loans, and research assistants were funded by the Museum of Zoology’s Hinsdale & Walker fund and an NSF Doctoral Dissertation Improvement Grant.