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Colletotrichum: Complex Species Or Species Complexes?

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Studies in Mycology 73 (September 2012) Colletotrichum: complex species or species complexes? Ulrike Damm, Paul F. Cannon and Pedro W. Crous, editors CBS-KNAW Fungal Biodiversity Centre, Utrecht, The Netherlands An institute of the Royal Netherlands Academy of Arts and Sciences Colletotrichum: complex species or species complexes? STUDIES IN MYCOLOGY 73, 2012 Studies in Mycology The Studies in Mycology is an international journal which publishes systematic monographs of filamentous fungi and yeasts, and in rare occasions the proceedings of special meetings related to all fields of mycology, biotechnology, ecology, molecular biology, pathology and systematics. For instructions for authors see www.cbs.knaw.nl. EXECUTIVE EDITOR Prof. dr dr hc Robert A. Samson, CBS-KNAW Fungal Biodiversity Centre, P.O. Box 85167, 3508 AD Utrecht, The Netherlands. E-mail: [email protected] LAYOUT EDITOR Manon van den Hoeven-Verweij, CBS-KNAW Fungal Biodiversity Centre, P.O. Box 85167, 3508 AD Utrecht, The Netherlands. E-mail: [email protected] SCIENTIFIC EDITORS Prof. dr Dominik Begerow, Lehrstuhl für Evolution und Biodiversität der Pflanzen, Ruhr-Universität Bochum, Universitätsstr. 150, Gebäude ND 44780, Bochum, Germany. E-mail: [email protected] Prof. dr Uwe Braun, Martin-Luther-Universität, Institut für Biologie, Geobotanik und Botanischer Garten, Herbarium, Neuwerk 21, D-06099 Halle, Germany. E-mail: [email protected] Dr Paul Cannon, CABI and Royal Botanic Gardens, Kew, Jodrell Laboratory, Royal Botanic Gardens, Kew, Richmond, Surrey TW9 3AB, U.K. E-mail: [email protected] Prof. dr Lori Carris, Associate Professor, Department of Plant Pathology, Washington State University, Pullman, WA 99164-6340, U.S.A. E-mail: [email protected] Prof. dr Pedro W. Crous, CBS-KNAW Fungal Biodiversity Centre, P.O. Box 85167, 3508 AD Utrecht, The Netherlands. E-mail: [email protected] Prof. dr David M. Geiser, Department of Plant Pathology, 121 Buckhout Laboratory, Pennsylvania State University, University Park, PA, U.S.A. 16802. E-mail: [email protected] Dr Johannes Z. Groenewald, CBS-KNAW Fungal Biodiversity Centre, P.O. Box 85167, 3508 AD Utrecht, The Netherlands. E-mail: [email protected] Prof. dr David S. Hibbett, Department of Biology, Clark University, 950 Main Street, Worcester, Massachusetts, 01610-1477, U.S.A. E-mail: [email protected] Dr Lorelei L. Norvell, Pacific Northwest Mycology Service, 6720 NW Skyline Blvd, Portland, OR, U.S.A. 97229-1309. E-mail: [email protected] Prof. dr Alan J.L. Phillips, Faculdade de Ciências e Tecnologia, Universidade Nova de Lisboa, Quinta de Torre, 2829-516 Caparica, Portugal. E-mail: [email protected] Dr Amy Y. Rossman, Rm 304, Bldg 011A, Systematic Botany & Mycology Laboratory, Beltsville, MD, U.S.A. 20705. E-mail: [email protected] Dr Keith A. Seifert, Research Scientist / Biodiversity (Mycology and Botany), Agriculture & Agri-Food Canada, KW Neatby Bldg, 960 Carling Avenue, Ottawa, ON, Canada K1A OC6. E-mail: [email protected] Prof. dr Hyeon-Dong Shin, Division of Environmental Science & Ecological Engineering, Korea University, Seoul 136-701, Korea. E-mail: [email protected] Dr Roger Shivas, Manager, Plant Biosecurity Science, Biosecurity Queensland, Department of Employment, Economic Development and Innovation, DEEDI, GPO Box 267, Brisbane, Qld 4001, Dutton Park 4102, Queensland, Australia. E-mail: [email protected] Dr Marc Stadler, InterMed Discovery GmbH, Otto-Hahn-Straße 15, D-44227 Dortmund, Germany. E-mail: [email protected] Prof. dr Jeffrey K. Stone, Department of Botany & Plant Pathology, Cordley 2082, Oregon State University, Corvallis, OR, U.S.A. 97331-2902. E-mail: [email protected] Dr Richard C. Summerbell, 27 Hillcrest Park, Toronto, Ont. M4X 1E8, Canada. E-mail: [email protected] Prof. dr Brett Summerell, Royal Botanic Gardens and Domain Trust, Mrs. Macquaries Road, Sydney, NSW 2000, Australia. E-mail: [email protected] Prof. dr Ulf Thrane, Department of Systems Biology, Center for Microbial Biotechnology, Technical University of Denmark, Søltofts Plads 221, DK-2800 Kgs. Lyngby, Denmark. E-mail: [email protected] Copyright 2012 CBS-KNAW Fungal Biodiversity Centre, P.O. Box 85167, 3508 AD Utrecht, The Netherlands. You are free to share — to copy, distribute and transmit the work, under the following conditions: Attribution: You must attribute the work in the manner specified by the author or licensor (but not in any way that suggests that they endorse you or your use of the work). Non-commercial: You may not use this work for commercial purposes. No derivative works: You may not alter, transform, or build upon this work. For any reuse or distribution, you must make clear to others the license terms of this work, which can be found at http://creativecommons.org/licenses/by-nc-nd/3.0/legalcode. Any of the above conditions can be waived if you get permission from the copyright holder. Nothing in this license impairs or restricts the author"s moral rights. Publication date:15 Sep 2012 Published and distributed by CBS-KNAW Fungal Biodiversity Centre, P.O. Box 85167, 3508 AD Utrecht, The Netherlands. Internet: www.cbs.knaw.nl. E-mail: [email protected]. ISBN/EAN : 978-90-70351-92-2 Online ISSN : 1872-9797 Print ISSN : 0166-0616 Cover: Top from left to right: Conidia of Colletotrichum beeveri on SNA, anthracnose of strawberry fruit caused by C. nymphaeae, conidia of C. gloeosporioides on Anthriscus stem. Bottom from left to right: culture of C. alatae on PDA, conidia of C. fioriniae on Anthriscus stem, conidioma of C. novae-zelandiae on Anthriscus stem. Colletotrichum: complex species or species complexes? edited by Ulrike Damm CBS-KNAW Fungal Biodiversity Centre, Uppsalalaan 8, 3584 CT Utrecht, The Netherlands Paul F. Cannon CABI Europe-UK, Bakeham Lane, Egham, Surrey TW20 9TY, UK and Royal Botanic Gardens, Kew, Richmond TW9 3AB, UK Pedro W. Crous CBS-KNAW Fungal Biodiversity Centre, Uppsalalaan 8, 3584 CT Utrecht, The Netherlands CBS-KNAW Fungal Biodiversity Centre, Utrecht, The Netherlands An institute of the Royal Netherlands Academy of Arts and Sciences DEDICATION This volume is dedicated to Brian C. Sutton, fungal systematist non plus ultra and Chief Mycologist at the International Mycological Institute (IMI) until his retirement in 1995. After arrival at IMI straight from university in 1959, Brian was faced with the choice of specialising in rusts or coelomycetes (fungi forming conidia within fruit-bodies). His courageous decision to work with the then almost unknown coelomycete group paved the way for a long and diverse career. Many of the fungi he worked with are minute and require patient and meticulous analytical microscopy. Brian’s ability to see almost invisible details of conidiomatal anatomy, conidiogenesis and conidium morphology, and to translate these observations into detailed descriptions and beautiful line drawings, made him one of the most celebrated fungal systematists of the pre-molecular era. He has a voluminous publication record, and his 1980 monograph “The Coelomycetes – Fungi imperfecti with pycnidia, acervuli and stromata” is still the basic standard morphological reference work for this group of fungi. The diversity of his output can be judged by the list of 990 fungal names he authored or co-authored. Some of these were imaginatively named, including the genera Satchmopsis (in honour of his jazz hero Louis Armstrong) and Omega (the final taxon published inTransactions of the British Mycological Society, of which he was Senior Editor between 1977 and 1988). Brian was always generous with his time in support of fellow mycologists and students from all over the globe, who sent him numerous collections of “troublesome” coelomycetes. On many occasions, these initial requests for help led on to mentoring of the developing scientific careers of his correspondents, and to continuing collaborations in fungal systematics. Brian’s involvement with Colletotrichum began with a paper on C. dematium and C. trichellum in 1962, and developed as the subject for his PhD thesis which focused on the morphology and ontogeny of species associated with grasses. His were the first scientific contributions that established the importance of appressorium morphology in Colletotrichum systematics. After studies of conidial fungi in almost all the branches and bywaters of the Ascomycota, his second major contribution was to provide a user-friendly guide to Colletotrichum in the 1980 Coelomycetes monograph, which built on von Arx’s work to provide a framework for morphology-based identification that still has value today. This was followed by a further systematic account in 1992, which increased the number of accepted species to 39. Brian retired shortly before the fungal molecular phylogenetic revolution gained pace. Although the classification he developed inThe Coelomycetes was unavoidably artificial, it continues to play a major role in ground-truthing of the results of new phylogenetic research, Brian Sutton working in his office (1992), in the final days of the International through integration with recent studies that add molecular data to Mycological Institute at Kew (photo by David Minter). Brian’s original morphological observations. Other than his love for fungi, Brian’s love for jazz music is well known among his mycological colleagues. Our decision to dedicate this volume to him comes with the expectation that he will be paging through it with something soothing playing in the background. Although the backbone of Colletotrichum systematics remains unaltered more than thirty years after The Coelomycetes was published, we hope that recognition of the cryptic lineages within the species complexes included in this volume goes some way towards explanation of their extraordinary variation. “And it feels like rain “ing species” – Buddy Guy The Editors September 2012 CONTENTS U. Damm, P.F. Cannon, J.H.C. Woudenberg, P.R. Johnston, B.S. Weir, Y.P. Tan, R.G. Shivas, and P.W. Crous. The Colletotrichum boninense species complex .............................................................................................................................................................................................
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  • Colletotrichum: a Catalogue of Confusion

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    Online advance Fungal Diversity Colletotrichum: a catalogue of confusion Hyde, K.D.1,2*, Cai, L.3, McKenzie, E.H.C.4, Yang, Y.L.5,6, Zhang, J.Z.7 and Prihastuti, H.2,8 1International Fungal Research & Development Centre, The Research Institute of Resource Insects, Chinese Academy of Forestry, Bailongsi, Kunming 650224, PR China 2School of Science, Mae Fah Luang University, Thasud, Chiang Rai 57100, Thailand 3Novozymes China, No. 14, Xinxi Road, Shangdi, HaiDian, Beijing, 100085, PR China 4Landcare Research, Private Bag 92170, Auckland, New Zealand 5Guizhou Academy of Agricultural Sciences, Guiyang, Guizhou 550006 PR China 6Department of Biology and Geography, Liupanshui Normal College. Shuicheng, Guizhou 553006, P.R. China 7Institute of Biotechnology, College of Agriculture & Biotechnology, Zhejiang University, Kaixuan Rd 258, Hangzhou 310029, PR China 8Department of Biotechnology, Faculty of Agriculture, Brawijaya University, Malang 65145, Indonesia Hyde, K.D., Cai, L., McKenzie, E.H.C., Yang, Y.L., Zhang, J.Z. and Prihastuti, H. (2009). Colletotrichum: a catalogue of confusion. Fungal Diversity 39: 1-17. Identification of Colletotrichum species has long been difficult due to limited morphological characters. Single gene phylogenetic analyses have also not proved to be very successful in delineating species. This may be partly due to the high level of erroneous names in GenBank. In this paper we review the problems associated with taxonomy of Colletotrichum and difficulties in identifying taxa to species. We advocate epitypification and use of multi-locus phylogeny to delimit species and gain a better understanding of the genus. We review the lifestyles of Colletotrichum species, which may occur as epiphytes, endophytes, saprobes and pathogens.
  • COMPLEXOS DE ESPÉCIES DE Colletotrichum ASSOCIADOS AOS CITROS E a OUTRAS FRUTÍFERAS NO BRASIL

    COMPLEXOS DE ESPÉCIES DE Colletotrichum ASSOCIADOS AOS CITROS E a OUTRAS FRUTÍFERAS NO BRASIL

    UNIVERSIDADE ESTADUAL PAULISTA JÚLIO DE MESQUITA FILHO FACULDADE DE CIENCIAS AGRÁRIAS E VETERINÁRIAS DE JABOTICABAL COMPLEXOS DE ESPÉCIES DE Colletotrichum ASSOCIADOS AOS CITROS E A OUTRAS FRUTÍFERAS NO BRASIL Roberta Cristina Delphino Carboni Engenheira Agrônoma 2018 T E S E / C A R B O N I R. C. D. 2 0 1 8 UNIVERSIDADE ESTADUAL PAULISTA JÚLIO DE MESQUITA FILHO FACULDADE DE CIENCIAS AGRÁRIAS E VETERINÁRIAS DE JABOTICABAL COMPLEXOS DE ESPÉCIES DE Colletotrichum ASSOCIADOS AOS CITROS E A OUTRAS FRUTÍFERAS NO BRASIL Roberta Cristina Delphino Carboni Orientador: Prof. Dr. Antonio de Goes Co-orientadora: Dra. Andressa de Souza Pollo Tese apresentada à Faculdade de Ciências Agrárias e Veterinárias – Unesp, Câmpus de Jaboticabal, como parte das exigências para a obtenção do título de Doutora em Agronomia (Genética e Melhoramento de Plantas) 2018 Carboni, Roberta Cristina Delphino C264d Complexos de espécies de Colletotrichum associados aos citros e a outras frutíferas no Brasil / Roberta Cristina Delphino Carboni. – – Jaboticabal, 2018 x, 107 p.: il.; 29 cm Tese (doutorado) - Universidade Estadual Paulista, Faculdade de Ciências Agrárias e Veterinárias, 2018 Orientador: Antonio de Goes Co-orientadora: Dra. Andressa de Souza Pollo Banca examinadora: Kátia Cristina Kupper, Rita de Cássia Panizzi, Juliana Altafin Galli, Marcos Tulio de Oliveira Bibliografia 1. Citrus spp., Colletotrichum spp. 2. Análise polifásica. 3. marcadores ISSR. I. Título. II. Jaboticabal-Faculdade de Ciências Agrárias e Veterinárias. CDU 634.3:632.4 Ficha catalográfica elaborada pela Seção Técnica de Aquisição e Tratamento da Informação – Diretoria Técnica de Biblioteca e Documentação - UNESP, Câmpus de Jaboticabal. DADOS CURRICULARES DO AUTOR ROBERTA CRISTINA DELPHINO CARBONI - nascida em 03 de novembro de 1987, em Jaboticabal-SP, é Engenheira Agrônoma formada pela Faculdade de Ciências Agrárias e Veterinárias (FCAV), Universidade Estadual Paulista ‘Júlio de Mesquita Filho’ (UNESP), Câmpus de Jaboticabal-SP, em fevereiro de 2012.
  • Colletotrichum Acutatum

    Colletotrichum Acutatum

    Prepared by CABI and EPPO for the EU under Contract 90/399003 Data Sheets on Quarantine Pests Colletotrichum acutatum IDENTITY Name: Colletotrichum acutatum Simmonds Synonyms: Colletotrichum xanthii Halsted Taxonomic position: Fungi: Ascomycetes: Polystigmatales (probable anamorph) Common names: Anthracnose, black spot (of strawberry), terminal crook disease (of pine), leaf curl (of anemone and celery), crown rot (especially of anemone and celery) (English) Taches noires du fraisier (French) Manchas negras del fresón (Spanish) Notes on taxonomy and nomenclature: The classification of the genus Colletotrichum is currently very unsatisfactory, and several species occur on the principal economic host (strawberry) which are regularly confused. As well as C. acutatum, these include the Glomerella cingulata anamorphs C. fragariae and C. gloeosporioides, all of which can be distinguished by isozyme analysis (Bonde et al., 1991). Studies are continuing. Colletotrichum xanthii appears to be an earlier name for C. acutatum, but more research is necessary before it is adopted in plant pathology circles. Bayer computer code: COLLAC EU Annex designation: II/A2 HOSTS The species has a very wide host range, but is economically most important on strawberries (Fragaria ananassa). Other cultivated hosts include Anemone coronaria, apples (Malus pumila), aubergines (Solanum melongena), avocados (Persea americana), Camellia spp., Capsicum annuum, Ceanothus spp., celery (Apium graveolens), coffee (Coffea arabica), guavas (Psidium guajava), olives (Olea europea), pawpaws (Carica papaya), Pinus (especially P. radiata and P. elliottii), tamarillos (Cyphomandra betacea), tomatoes (Lycopersicon esculentum), Tsuga heterophylla and Zinnia spp. Colletotrichum acutatum can apparently affect almost any flowering plant, especially in warm temperate or tropical regions, although its host range needs further clarification.
  • Investigation on the Role of Plant Defensin Proteins in Regulating Plant-Verticillium Longisporum Interactions in Arabidopsis Thaliana

    Investigation on the Role of Plant Defensin Proteins in Regulating Plant-Verticillium Longisporum Interactions in Arabidopsis Thaliana

    Aus dem Institut für Phytopathologie der Christian-Albrechts-Universität zu Kiel Investigation on the role of plant defensin proteins in regulating plant-Verticillium longisporum interactions in Arabidopsis thaliana Dissertation zur Erlangung des Doktorgrades der Agrar- und Ernährungswissenschaftlichen Fakultät der Christian-Albrechts-Universität zu Kiel vorgelegt von M.Sc. Shailja Singh aus Lucknow, India Kiel, 2020 Dekan/in: Professor Dr. Dr. Christian Henning 1. Berichterstatter: Prof. Dr. Daguang Cai 2. Berichterstatter: Prof. Dr. Professor Joseph-Alexander Verreet Tag der mündlichen Prüfung: 17.06.2020 Schriftenreihe des Instituts für Phytopathologie der Christian-Albrechts-Universität zu Kiel; Heft 7, 2020 ISSN: 2197-554X Gedruckt mit Genehmigung der Agrar- und Ernährungswissenschaftlichen Fakultät der Christian-Albrechts-Universität zu Kiel Table of Contents Table of Contents Table of Contents ........................................................................................................... I List of Figures ................................................................................................................ V List of Tables ............................................................................................................... VII List of Abbreviations .................................................................................................. VIII Chapter I: General Introduction .................................................................................... 1 1 Induced plant defense responses