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Article Evolutionary Dynamics of the OR Gene Repertoire in Teleost Fishes
bioRxiv preprint doi: https://doi.org/10.1101/2021.03.09.434524; this version posted March 10, 2021. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. Article Evolutionary dynamics of the OR gene repertoire in teleost fishes: evidence of an association with changes in olfactory epithelium shape Maxime Policarpo1, Katherine E Bemis2, James C Tyler3, Cushla J Metcalfe4, Patrick Laurenti5, Jean-Christophe Sandoz1, Sylvie Rétaux6 and Didier Casane*,1,7 1 Université Paris-Saclay, CNRS, IRD, UMR Évolution, Génomes, Comportement et Écologie, 91198, Gif-sur-Yvette, France. 2 NOAA National Systematics Laboratory, National Museum of Natural History, Smithsonian Institution, Washington, D.C. 20560, U.S.A. 3Department of Paleobiology, National Museum of Natural History, Smithsonian Institution, Washington, D.C., 20560, U.S.A. 4 Independent Researcher, PO Box 21, Nambour QLD 4560, Australia. 5 Université de Paris, Laboratoire Interdisciplinaire des Energies de Demain, Paris, France 6 Université Paris-Saclay, CNRS, Institut des Neurosciences Paris-Saclay, 91190, Gif-sur- Yvette, France. 7 Université de Paris, UFR Sciences du Vivant, F-75013 Paris, France. * Corresponding author: e-mail: [email protected]. !1 bioRxiv preprint doi: https://doi.org/10.1101/2021.03.09.434524; this version posted March 10, 2021. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. Abstract Teleost fishes perceive their environment through a range of sensory modalities, among which olfaction often plays an important role. -
§4-71-6.5 LIST of CONDITIONALLY APPROVED ANIMALS November
§4-71-6.5 LIST OF CONDITIONALLY APPROVED ANIMALS November 28, 2006 SCIENTIFIC NAME COMMON NAME INVERTEBRATES PHYLUM Annelida CLASS Oligochaeta ORDER Plesiopora FAMILY Tubificidae Tubifex (all species in genus) worm, tubifex PHYLUM Arthropoda CLASS Crustacea ORDER Anostraca FAMILY Artemiidae Artemia (all species in genus) shrimp, brine ORDER Cladocera FAMILY Daphnidae Daphnia (all species in genus) flea, water ORDER Decapoda FAMILY Atelecyclidae Erimacrus isenbeckii crab, horsehair FAMILY Cancridae Cancer antennarius crab, California rock Cancer anthonyi crab, yellowstone Cancer borealis crab, Jonah Cancer magister crab, dungeness Cancer productus crab, rock (red) FAMILY Geryonidae Geryon affinis crab, golden FAMILY Lithodidae Paralithodes camtschatica crab, Alaskan king FAMILY Majidae Chionocetes bairdi crab, snow Chionocetes opilio crab, snow 1 CONDITIONAL ANIMAL LIST §4-71-6.5 SCIENTIFIC NAME COMMON NAME Chionocetes tanneri crab, snow FAMILY Nephropidae Homarus (all species in genus) lobster, true FAMILY Palaemonidae Macrobrachium lar shrimp, freshwater Macrobrachium rosenbergi prawn, giant long-legged FAMILY Palinuridae Jasus (all species in genus) crayfish, saltwater; lobster Panulirus argus lobster, Atlantic spiny Panulirus longipes femoristriga crayfish, saltwater Panulirus pencillatus lobster, spiny FAMILY Portunidae Callinectes sapidus crab, blue Scylla serrata crab, Samoan; serrate, swimming FAMILY Raninidae Ranina ranina crab, spanner; red frog, Hawaiian CLASS Insecta ORDER Coleoptera FAMILY Tenebrionidae Tenebrio molitor mealworm, -
Belonidae Bonaparte 1832 Needlefishes
ISSN 1545-150X California Academy of Sciences A N N O T A T E D C H E C K L I S T S O F F I S H E S Number 16 September 2003 Family Belonidae Bonaparte 1832 needlefishes By Bruce B. Collette National Marine Fisheries Service Systematics Laboratory National Museum of Natural History, Washington, DC 20560–0153, U.S.A. email: [email protected] Needlefishes are a relatively small family of beloniform fishes (Rosen and Parenti 1981 [ref. 5538], Collette et al. 1984 [ref. 11422]) that differ from other members of the order in having both the upper and the lower jaws extended into long beaks filled with sharp teeth (except in the neotenic Belonion), the third pair of upper pharyngeal bones separate, scales on the body relatively small, and no finlets following the dorsal and anal fins. The nostrils lie in a pit anterior to the eyes. There are no spines in the fins. The dorsal fin, with 11–43 rays, and anal fin, with 12–39 rays, are posterior in position; the pelvic fins, with 6 soft rays, are located in an abdominal position; and the pectoral fins are short, with 5–15 rays. The lateral line runs down from the pectoral fin origin and then along the ventral margin of the body. The scales are small, cycloid, and easily detached. Precaudal vertebrae number 33–65, caudal vertebrae 19–41, and total verte- brae 52–97. Some freshwater needlefishes reach only 6 or 7 cm (2.5 or 2.75 in) in total length while some marine species may attain 2 m (6.5 ft). -
An Investigation on Fishes of Bandirma Bay (Sea of Marmara)
BAÜ Fen Bil. Enst. Dergisi (2004).6.2 AN INVESTIGATION ON FISHES OF BANDIRMA BAY (SEA OF MARMARA) Hatice TORCU KOÇ University of Balikesir, Faculty of Science and Arts, Department of Hydrobiology, 10100, Balikesir, Turkey ABSTRACT This investigation was carried out for the determination of fish species living in Bandırma Bay (Sea of Marmara). Morphometric and meristic characters of of fishes caught by trawl and various nets in Bandırma Bay in the years of 1998-1999 were examined and some morphological, ecological properties, and local names of 34 determined species are given. Key Words: Fish Species, Systematic, Bandırma Bay BANDIRMA KÖRFEZİ (MARMARA DENİZİ) BALIKLARI ÜZERİNE BİR ARAŞTIRMA ÖZET Bu araştırma Bandırma Körfezi (Marmara Denizi)’nde yaşayan balık türlerini belirlemek amacıyla yapılmıştır. 1998-1999 yılları arasında körfez içinde trol ve çeşitli ağlar ile yakalanan balıkların morfometrik ve meristik karakterleri incelenmiş ve saptanan 34 türün bazı morfolojik, ekolojik özellikleri, ve yerel isimleri verilmiştir. Anahtar Kelimeler: Balık türleri, Sistematik, Bandırma Körfezi 1. INTRODUCTION Research on the sea fauna along the coasts of Turkey was initiated by foreign researchers at the begining of the 20th century and entered an intensive stage with Turkish researchers in the 1940s. However, the fish fauna of Turkish seas has still not been fully determined. Of these researchers, Tortonese (1) listed 300 species. Papaconstantinou and Tsimenids (2) listed 33 species. Papaconstantinou (3) listed the most of 447 species for Aegean Sea. Slastenenko (4) listed 200 species for Sea of Marmara and 189 species for Black Sea. Tortonese (1) reported 540 fish species in whole of Mediterranean. Demetropoulos and Neocleous (5) gave a list of fishes for Cyprus area. -
Mediterranean Marine Science
Mediterranean Marine Science Vol. 18, 2017 “New Mediterranean Biodiversity Records” (March 2017) LIPEJ L. Marine Biology Station, National Institute of Biology, Fornače 61, 6630 Piran ACEVEDO I. Museo Nacional de Ciencias Naturales (MNCN-CSIC), José Gutiérrez Abascal, 2, 28006 Madrid AKEL E.H.K. Fishery Biology Lab, National Institute of Oceanography and Fisheries Kait-Bey, Alexandria ANASTASOPOULOU A. Hellenic Center of Marine Research, 46.7 km Athens Sounio ave., P.O. Box 712, 19013 Anavyssos ANGELIDIS A. Kapetan Vangeli 5, 54646 Thessaloniki AZZURRO E. Institute for Environmental Protection and Research (ISPRA), STS Livorno, Piazzale dei Marmi 2, 57123, Livorno CASTRIOTA L. Institute for Environmental Protection and Research, ISPRA,Via S. Puglisi 9, STS- Palermo, 90143 Palermo ÇELIK M. Faculty of Fisheries, Muğla Sıtkı Koçman University, 48000, Kötekli, Muğla CILENTI L. C.N.R. – ISMAR, UOS Lesina, Via Pola, 4 – 71010 Lesina (FG) CROCETTA F. Hellenic Center of Marine Research, 46.7 km Athens Sounio ave., P.O. Box 712, 19013 Anavyssos DEIDUN A. Department of Geosciences, University of Malta, Msida MSD 2080 DOGRAMMATZI A. Hellenic Center of Marine Research, 46.7 km Athens Sounio ave., P.O. Box 712, 19013 Anavyssos FALAUTANO M. Institute for Environmental http://epublishing.ekt.gr | e-Publisher: EKT | Downloaded at 21/02/2020 06:27:07 | Protection and Research, ISPRA,Via S. Puglisi 9, STS- Palermo, 90143 Palermo FERNÁNDEZ-ÁLVAREZ Institut de Ciències del Mar F.Á. (CSIC), Passeig Maritim 37–49, 08003 Barcelona GENNAIO R. Regional Agency for Environmental Protection (ARPA) Puglia, Lecce Department, Via Miglietta 1, 73100, Lecce INSACCO G. Museo Civico di Storia Naturale, via degli Studi 9, 97013 Comiso (RG) KATSANEVAKIS S. -
DEEP SEA LEBANON RESULTS of the 2016 EXPEDITION EXPLORING SUBMARINE CANYONS Towards Deep-Sea Conservation in Lebanon Project
DEEP SEA LEBANON RESULTS OF THE 2016 EXPEDITION EXPLORING SUBMARINE CANYONS Towards Deep-Sea Conservation in Lebanon Project March 2018 DEEP SEA LEBANON RESULTS OF THE 2016 EXPEDITION EXPLORING SUBMARINE CANYONS Towards Deep-Sea Conservation in Lebanon Project Citation: Aguilar, R., García, S., Perry, A.L., Alvarez, H., Blanco, J., Bitar, G. 2018. 2016 Deep-sea Lebanon Expedition: Exploring Submarine Canyons. Oceana, Madrid. 94 p. DOI: 10.31230/osf.io/34cb9 Based on an official request from Lebanon’s Ministry of Environment back in 2013, Oceana has planned and carried out an expedition to survey Lebanese deep-sea canyons and escarpments. Cover: Cerianthus membranaceus © OCEANA All photos are © OCEANA Index 06 Introduction 11 Methods 16 Results 44 Areas 12 Rov surveys 16 Habitat types 44 Tarablus/Batroun 14 Infaunal surveys 16 Coralligenous habitat 44 Jounieh 14 Oceanographic and rhodolith/maërl 45 St. George beds measurements 46 Beirut 19 Sandy bottoms 15 Data analyses 46 Sayniq 15 Collaborations 20 Sandy-muddy bottoms 20 Rocky bottoms 22 Canyon heads 22 Bathyal muds 24 Species 27 Fishes 29 Crustaceans 30 Echinoderms 31 Cnidarians 36 Sponges 38 Molluscs 40 Bryozoans 40 Brachiopods 42 Tunicates 42 Annelids 42 Foraminifera 42 Algae | Deep sea Lebanon OCEANA 47 Human 50 Discussion and 68 Annex 1 85 Annex 2 impacts conclusions 68 Table A1. List of 85 Methodology for 47 Marine litter 51 Main expedition species identified assesing relative 49 Fisheries findings 84 Table A2. List conservation interest of 49 Other observations 52 Key community of threatened types and their species identified survey areas ecological importanc 84 Figure A1. -
Journal of Ecology and Environmental Sciences
e-ISSN: 2347-7830 p-ISSN: 2347-7822 Research and Reviews: Journal of Ecology and Environmental Sciences Range Extension of Endangered Earthworm Eel Pillaia indica Yazdani, 1972 (Synbranchiformes: Chaudhuriidae) from West Bengal, India. Muthukumarasamy Arunachalam1*, Manickam Raja1, Subramaniyam Nandagopal1, Chinnian Vijayakumar2, Punniyam Malaiammal1, and Showket Ahmad Bhat1. 1Sri Paramakalyani Centre for Environmental Sciences, Manonmaniam Sundaranar University, Alwarkurichi - 627 412, Tamil Nadu, India. 2Department of Zoology, St. Andrew’s College, Gorakhpur -273 001, Uttar Pradesh, India. Short Communication Received: 11/11/2013 Revised: 12/12/2013 ABSTRACT Accepted: 15/12/2013 Pillaia indica Yazdani 1972, was described from Khasi hills of *For Correspondence Meghalaya state, India and the distributional range is restricted to less than 10 km2 and based on that it was concluded that it is a biogeographic Sri Paramakalyani Centre for relict confined to a very small geographic location. However, in a recent Environmental Sciences, survey we collected 10 specimens from Darjeeling district, West Bengal Manonmaniam Sundaranar indicated that this species is widely distributed and the sampling needs University, Alwarkurichi-627 skill as these species dwell inside the exposed roots of riparian canopy 412, Tamil Nadu, India. along the streams. Mobile: +91 94431 84735 Keywords: Pillaia indica, New record, Biogeographic relict, Darjeeling district, West Bengal. INTRODUCTION The South Asian Mastacembeloid fish family Chaudhuridae is popularly called as earthworm eels and this family includes six genera eight species. They are small, living in buried riparian vegetation and in bottom substrate or with substrate mixed with fine sand and clay. They differ externally from the family Mastacembelidae in having only soft fin instead of spines anteriorly in dorsal and anal fins [3] and the distributional range of this family is from Brahmaputra river basin, India. -
Venom Evolution Widespread in Fishes: a Phylogenetic Road Map for the Bioprospecting of Piscine Venoms
Journal of Heredity 2006:97(3):206–217 ª The American Genetic Association. 2006. All rights reserved. doi:10.1093/jhered/esj034 For permissions, please email: [email protected]. Advance Access publication June 1, 2006 Venom Evolution Widespread in Fishes: A Phylogenetic Road Map for the Bioprospecting of Piscine Venoms WILLIAM LEO SMITH AND WARD C. WHEELER From the Department of Ecology, Evolution, and Environmental Biology, Columbia University, 1200 Amsterdam Avenue, New York, NY 10027 (Leo Smith); Division of Vertebrate Zoology (Ichthyology), American Museum of Natural History, Central Park West at 79th Street, New York, NY 10024-5192 (Leo Smith); and Division of Invertebrate Zoology, American Museum of Natural History, Central Park West at 79th Street, New York, NY 10024-5192 (Wheeler). Address correspondence to W. L. Smith at the address above, or e-mail: [email protected]. Abstract Knowledge of evolutionary relationships or phylogeny allows for effective predictions about the unstudied characteristics of species. These include the presence and biological activity of an organism’s venoms. To date, most venom bioprospecting has focused on snakes, resulting in six stroke and cancer treatment drugs that are nearing U.S. Food and Drug Administration review. Fishes, however, with thousands of venoms, represent an untapped resource of natural products. The first step in- volved in the efficient bioprospecting of these compounds is a phylogeny of venomous fishes. Here, we show the results of such an analysis and provide the first explicit suborder-level phylogeny for spiny-rayed fishes. The results, based on ;1.1 million aligned base pairs, suggest that, in contrast to previous estimates of 200 venomous fishes, .1,200 fishes in 12 clades should be presumed venomous. -
Vulnerable Forests of the Pink Sea Fan Eunicella Verrucosa in the Mediterranean Sea
diversity Article Vulnerable Forests of the Pink Sea Fan Eunicella verrucosa in the Mediterranean Sea Giovanni Chimienti 1,2 1 Dipartimento di Biologia, Università degli Studi di Bari, Via Orabona 4, 70125 Bari, Italy; [email protected]; Tel.: +39-080-544-3344 2 CoNISMa, Piazzale Flaminio 9, 00197 Roma, Italy Received: 14 April 2020; Accepted: 28 April 2020; Published: 30 April 2020 Abstract: The pink sea fan Eunicella verrucosa (Cnidaria, Anthozoa, Alcyonacea) can form coral forests at mesophotic depths in the Mediterranean Sea. Despite the recognized importance of these habitats, they have been scantly studied and their distribution is mostly unknown. This study reports the new finding of E. verrucosa forests in the Mediterranean Sea, and the updated distribution of this species that has been considered rare in the basin. In particular, one site off Sanremo (Ligurian Sea) was characterized by a monospecific population of E. verrucosa with 2.3 0.2 colonies m 2. By combining ± − new records, literature, and citizen science data, the species is believed to be widespread in the basin with few or isolated colonies, and 19 E. verrucosa forests were identified. The overall associated community showed how these coral forests are essential for species of conservation interest, as well as for species of high commercial value. For this reason, proper protection and management strategies are necessary. Keywords: Anthozoa; Alcyonacea; gorgonian; coral habitat; coral forest; VME; biodiversity; mesophotic; citizen science; distribution 1. Introduction Arborescent corals such as antipatharians and alcyonaceans can form mono- or multispecific animal forests that represent vulnerable marine ecosystems of great ecological importance [1–4]. -
Morphological Variations in the Scleral Ossicles of 172 Families Of
Zoological Studies 51(8): 1490-1506 (2012) Morphological Variations in the Scleral Ossicles of 172 Families of Actinopterygian Fishes with Notes on their Phylogenetic Implications Hin-kui Mok1 and Shu-Hui Liu2,* 1Institute of Marine Biology and Asia-Pacific Ocean Research Center, National Sun Yat-sen University, Kaohsiung 804, Taiwan 2Institute of Oceanography, National Taiwan University, 1 Roosevelt Road, Sec. 4, Taipei 106, Taiwan (Accepted August 15, 2012) Hin-kui Mok and Shu-Hui Liu (2012) Morphological variations in the scleral ossicles of 172 families of actinopterygian fishes with notes on their phylogenetic implications. Zoological Studies 51(8): 1490-1506. This study reports on (1) variations in the number and position of scleral ossicles in 283 actinopterygian species representing 172 families, (2) the distribution of the morphological variants of these bony elements, (3) the phylogenetic significance of these variations, and (4) a phylogenetic hypothesis relevant to the position of the Callionymoidei, Dactylopteridae, and Syngnathoidei based on these osteological variations. The results suggest that the Callionymoidei (not including the Gobiesocidae), Dactylopteridae, and Syngnathoidei are closely related. This conclusion was based on the apomorphic character state of having only the anterior scleral ossicle. Having only the anterior scleral ossicle should have evolved independently in the Syngnathioidei + Dactylopteridae + Callionymoidei, Gobioidei + Apogonidae, and Pleuronectiformes among the actinopterygians studied in this paper. http://zoolstud.sinica.edu.tw/Journals/51.8/1490.pdf Key words: Scleral ossicle, Actinopterygii, Phylogeny. Scleral ossicles of the teleostome fish eye scleral ossicles and scleral cartilage have received comprise a ring of cartilage supporting the eye little attention. It was not until a recent paper by internally (i.e., the sclerotic ring; Moy-Thomas Franz-Odendaal and Hall (2006) that the homology and Miles 1971). -
Systematic Taxonomy and Biogeography of Widespread
Systematics and Biogeography of Three Widespread Australian Freshwater Fish Species. by Bernadette Mary Bostock B.Sc. (Hons) Submitted in fulfilment of the requirements for the degree of Doctor of Philosophy Deakin University February 2014 i ABSTRACT The variation within populations of three widespread and little studied Australian freshwater fish species was investigated using molecular genetic techniques. The three species that form the focus of this study are Leiopotherapon unicolor, Nematalosa erebi and Neosilurus hyrtlii, commonly recognised as the three most widespread Australian freshwater fish species, all are found in most of the major Australian drainage basins with habitats ranging from clear running water to near stagnant pools. This combination of a wide distribution and tolerance of a wide range of ecological conditions means that these species are ideally suited for use in investigating phylogenetic structure within and amongst Australian drainage basins. Furthermore, the combination of increasing aridity of the Australian continent and its diverse freshwater habitats is likely to promote population differentiation within freshwater species through the restriction of dispersal opportunities and localised adaptation. A combination of allozyme and mtDNA sequence data were employed to test the null hypothesis that Leiopotherapon unicolor represents a single widespread species. Conventional approaches to the delineation and identification of species and populations using allozyme data and a lineage-based approach using mitochondrial 16S rRNA sequences were employed. Apart from addressing the specific question of cryptic speciation versus high colonisation potential in widespread inland fishes, the unique status of L. unicolor as both Australia’s most widespread inland fish and most common desert fish also makes this a useful species to test the generality of current biogeographic hypotheses relating to the regionalisation of the Australian freshwater fish fauna. -
Pisces: Terapontidae) with Particular Reference to Ontogeny and Phylogeny
ResearchOnline@JCU This file is part of the following reference: Davis, Aaron Marshall (2012) Dietary ecology of terapontid grunters (Pisces: Terapontidae) with particular reference to ontogeny and phylogeny. PhD thesis, James Cook University. Access to this file is available from: http://eprints.jcu.edu.au/27673/ The author has certified to JCU that they have made a reasonable effort to gain permission and acknowledge the owner of any third party copyright material included in this document. If you believe that this is not the case, please contact [email protected] and quote http://eprints.jcu.edu.au/27673/ Dietary ecology of terapontid grunters (Pisces: Terapontidae) with particular reference to ontogeny and phylogeny PhD thesis submitted by Aaron Marshall Davis BSc, MAppSci, James Cook University in August 2012 for the degree of Doctor of Philosophy in the School of Marine and Tropical Biology James Cook University 1 2 Statement on the contribution of others Supervision was provided by Professor Richard Pearson (James Cook University) and Dr Brad Pusey (Griffith University). This thesis also includes some collaborative work. While undertaking this collaboration I was responsible for project conceptualisation, laboratory and data analysis and synthesis of results into a publishable format. Dr Peter Unmack provided the raw phylogenetic trees analysed in Chapters 6 and 7. Peter Unmack, Tim Jardine, David Morgan, Damien Burrows, Colton Perna, Melanie Blanchette and Dean Thorburn all provided a range of editorial advice, specimen provision, technical instruction and contributed to publications associated with this thesis. Greg Nelson-White, Pia Harkness and Adella Edwards helped compile maps. The project was funded by Internal Research Allocation and Graduate Research Scheme grants from the School of Marine and Tropical Biology, James Cook University (JCU).