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Insights on Reticulate Evolution in Ferns, with Special Emphasis on the Genus Ceratopteris
Utah State University DigitalCommons@USU All Graduate Theses and Dissertations Graduate Studies 8-2021 Insights on Reticulate Evolution in Ferns, with Special Emphasis on the Genus Ceratopteris Sylvia P. Kinosian Utah State University Follow this and additional works at: https://digitalcommons.usu.edu/etd Part of the Ecology and Evolutionary Biology Commons Recommended Citation Kinosian, Sylvia P., "Insights on Reticulate Evolution in Ferns, with Special Emphasis on the Genus Ceratopteris" (2021). All Graduate Theses and Dissertations. 8159. https://digitalcommons.usu.edu/etd/8159 This Dissertation is brought to you for free and open access by the Graduate Studies at DigitalCommons@USU. It has been accepted for inclusion in All Graduate Theses and Dissertations by an authorized administrator of DigitalCommons@USU. For more information, please contact [email protected]. INSIGHTS ON RETICULATE EVOLUTION IN FERNS, WITH SPECIAL EMPHASIS ON THE GENUS CERATOPTERIS by Sylvia P. Kinosian A dissertation submitted in partial fulfillment of the requirements for the degree of DOCTOR OF PHILOSOPHY in Ecology Approved: Zachariah Gompert, Ph.D. Paul G. Wolf, Ph.D. Major Professor Committee Member William D. Pearse, Ph.D. Karen Mock, Ph.D Committee Member Committee Member Karen Kaphiem, Ph.D Michael Sundue, Ph.D. Committee Member Committee Member D. Richard Cutler, Ph.D. Interim Vice Provost of Graduate Studies UTAH STATE UNIVERSITY Logan, Utah 2021 ii Copyright © Sylvia P. Kinosian 2021 All Rights Reserved iii ABSTRACT Insights on reticulate evolution in ferns, with special emphasis on the genus Ceratopteris by Sylvia P. Kinosian, Doctor of Philosophy Utah State University, 2021 Major Professor: Zachariah Gompert, Ph.D. -
Aquatic and Wet Marchantiophyta, Order Metzgeriales: Aneuraceae
Glime, J. M. 2021. Aquatic and Wet Marchantiophyta, Order Metzgeriales: Aneuraceae. Chapt. 1-11. In: Glime, J. M. Bryophyte 1-11-1 Ecology. Volume 4. Habitat and Role. Ebook sponsored by Michigan Technological University and the International Association of Bryologists. Last updated 11 April 2021 and available at <http://digitalcommons.mtu.edu/bryophyte-ecology/>. CHAPTER 1-11: AQUATIC AND WET MARCHANTIOPHYTA, ORDER METZGERIALES: ANEURACEAE TABLE OF CONTENTS SUBCLASS METZGERIIDAE ........................................................................................................................................... 1-11-2 Order Metzgeriales............................................................................................................................................................... 1-11-2 Aneuraceae ................................................................................................................................................................... 1-11-2 Aneura .......................................................................................................................................................................... 1-11-2 Aneura maxima ............................................................................................................................................................ 1-11-2 Aneura mirabilis .......................................................................................................................................................... 1-11-7 Aneura pinguis .......................................................................................................................................................... -
Pteridophyte Fungal Associations: Current Knowledge and Future Perspectives
This is a repository copy of Pteridophyte fungal associations: Current knowledge and future perspectives. White Rose Research Online URL for this paper: http://eprints.whiterose.ac.uk/109975/ Version: Accepted Version Article: Pressel, S, Bidartondo, MI, Field, KJ orcid.org/0000-0002-5196-2360 et al. (2 more authors) (2016) Pteridophyte fungal associations: Current knowledge and future perspectives. Journal of Systematics and Evolution, 54 (6). pp. 666-678. ISSN 1674-4918 https://doi.org/10.1111/jse.12227 © 2016 Institute of Botany, Chinese Academy of Sciences. This is the peer reviewed version of the following article: Pressel, S., Bidartondo, M. I., Field, K. J., Rimington, W. R. and Duckett, J. G. (2016), Pteridophyte fungal associations: Current knowledge and future perspectives. Jnl of Sytematics Evolution, 54: 666–678., which has been published in final form at https://doi.org/10.1111/jse.12227. This article may be used for non-commercial purposes in accordance with Wiley Terms and Conditions for Self-Archiving. Reuse Unless indicated otherwise, fulltext items are protected by copyright with all rights reserved. The copyright exception in section 29 of the Copyright, Designs and Patents Act 1988 allows the making of a single copy solely for the purpose of non-commercial research or private study within the limits of fair dealing. The publisher or other rights-holder may allow further reproduction and re-use of this version - refer to the White Rose Research Online record for this item. Where records identify the publisher as the copyright holder, users can verify any specific terms of use on the publisher’s website. -
Functional Gene Losses Occur with Minimal Size Reduction in the Plastid Genome of the Parasitic Liverwort Aneura Mirabilis
Functional Gene Losses Occur with Minimal Size Reduction in the Plastid Genome of the Parasitic Liverwort Aneura mirabilis Norman J. Wickett,* Yan Zhang, S. Kellon Hansen,à Jessie M. Roper,à Jennifer V. Kuehl,§ Sheila A. Plock, Paul G. Wolf,k Claude W. dePamphilis, Jeffrey L. Boore,§ and Bernard Goffinetà *Department of Ecology and Evolutionary Biology, University of Connecticut; Department of Biology, Penn State University; àGenome Project Solutions, Hercules, California; §Department of Energy Joint Genome Institute and University of California Lawrence Berkeley National Laboratory, Walnut Creek, California; and kDepartment of Biology, Utah State University Aneura mirabilis is a parasitic liverwort that exploits an existing mycorrhizal association between a basidiomycete and a host tree. This unusual liverwort is the only known parasitic seedless land plant with a completely nonphotosynthetic life history. The complete plastid genome of A. mirabilis was sequenced to examine the effect of its nonphotosynthetic life history on plastid genome content. Using a partial genomic fosmid library approach, the genome was sequenced and shown to be 108,007 bp with a structure typical of green plant plastids. Comparisons were made with the plastid genome of Marchantia polymorpha, the only other liverwort plastid sequence available. All ndh genes are either absent or pseudogenes. Five of 15 psb genes are pseudogenes, as are 2 of 6 psa genes and 2 of 6 pet genes. Pseudogenes of cysA, cysT, ccsA, and ycf3 were also detected. The remaining complement of genes present in M. polymorpha is present in the plastid of A. mirabilis with intact open reading frames. All pseudogenes and gene losses co-occur with losses detected in the plastid of the parasitic angiosperm Epifagus virginiana, though the latter has functional gene losses not found in A. -
Bryophyte Ecology Table of Contents
Glime, J. M. 2020. Table of Contents. Bryophyte Ecology. Ebook sponsored by Michigan Technological University 1 and the International Association of Bryologists. Last updated 15 July 2020 and available at <https://digitalcommons.mtu.edu/bryophyte-ecology/>. This file will contain all the volumes, chapters, and headings within chapters to help you find what you want in the book. Once you enter a chapter, there will be a table of contents with clickable page numbers. To search the list, check the upper screen of your pdf reader for a search window or magnifying glass. If there is none, try Ctrl G to open one. TABLE OF CONTENTS BRYOPHYTE ECOLOGY VOLUME 1: PHYSIOLOGICAL ECOLOGY Chapter in Volume 1 1 INTRODUCTION Thinking on a New Scale Adaptations to Land Minimum Size Do Bryophytes Lack Diversity? The "Moss" What's in a Name? Phyla/Divisions Role of Bryology 2 LIFE CYCLES AND MORPHOLOGY 2-1: Meet the Bryophytes Definition of Bryophyte Nomenclature What Makes Bryophytes Unique Who are the Relatives? Two Branches Limitations of Scale Limited by Scale – and No Lignin Limited by Scale – Forced to Be Simple Limited by Scale – Needing to Swim Limited by Scale – and Housing an Embryo Higher Classifications and New Meanings New Meanings for the Term Bryophyte Differences within Bryobiotina 2-2: Life Cycles: Surviving Change The General Bryobiotina Life Cycle Dominant Generation The Life Cycle Life Cycle Controls Generation Time Importance Longevity and Totipotency 2-3: Marchantiophyta Distinguishing Marchantiophyta Elaters Leafy or Thallose? Class -
Downloads/figure(Reversal Cost).Svg 1/1
bioRxiv preprint doi: https://doi.org/10.1101/2021.02.08.430207; this version posted February 17, 2021. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-ND 4.0 International license. 1 Living apart if you can – how genetically and developmentally controlled sex has shaped the 2 evolution of liverworts 3 4 Xiaolan He1, Jorge R. Flores1, Yu Sun2, John L. Bowman3 5 6 1.Finnish Museum of Natural History, University of Helsinki, FI-00014, Helsinki, Finland 7 2. Lushan Botanical Garden, Chinese Academy of Sciences, Jiujiang, Jiangxi 332900, China 8 3. School of Biological Science, Monash University, Melbourne VIC 3800, Australia 9 10 11 12 Abstract 13 Sexual differentiation in bryophytes occurs in the dominant gametophytic generation. Over half of 14 bryophytes are dioicous, and this pattern in liverworts is even more profound as over 70% of 15 species are dioicous. However, the evolutionary mechanisms leading to the prevalence of dioicy 16 and the shifts of sexual systems between dioicy and monoicy have remained poorly known. These 17 essential factors in reproductive biology are explored here in light of phylogenetics combined with 18 evidence of genomic characterization of sex chromosomes and sex-determination, as well as 19 cytology. Our analyses and discussions on liverworts are focused on: (1) ancestry and shifts in 20 sexuality, (2) evolution of sex chromosomes and maintenance of haploid dioicy, and (3) 21 environmental impact on the evolution of monoicism. -
Forest Health Technology Enterprise Team Biological Control of Invasive
Forest Health Technology Enterprise Team TECHNOLOGY TRANSFER Biological Control Biological Control of Invasive Plants in the Eastern United States Roy Van Driesche Bernd Blossey Mark Hoddle Suzanne Lyon Richard Reardon Forest Health Technology Enterprise Team—Morgantown, West Virginia United States Forest FHTET-2002-04 Department of Service August 2002 Agriculture BIOLOGICAL CONTROL OF INVASIVE PLANTS IN THE EASTERN UNITED STATES BIOLOGICAL CONTROL OF INVASIVE PLANTS IN THE EASTERN UNITED STATES Technical Coordinators Roy Van Driesche and Suzanne Lyon Department of Entomology, University of Massachusets, Amherst, MA Bernd Blossey Department of Natural Resources, Cornell University, Ithaca, NY Mark Hoddle Department of Entomology, University of California, Riverside, CA Richard Reardon Forest Health Technology Enterprise Team, USDA, Forest Service, Morgantown, WV USDA Forest Service Publication FHTET-2002-04 ACKNOWLEDGMENTS We thank the authors of the individual chap- We would also like to thank the U.S. Depart- ters for their expertise in reviewing and summariz- ment of Agriculture–Forest Service, Forest Health ing the literature and providing current information Technology Enterprise Team, Morgantown, West on biological control of the major invasive plants in Virginia, for providing funding for the preparation the Eastern United States. and printing of this publication. G. Keith Douce, David Moorhead, and Charles Additional copies of this publication can be or- Bargeron of the Bugwood Network, University of dered from the Bulletin Distribution Center, Uni- Georgia (Tifton, Ga.), managed and digitized the pho- versity of Massachusetts, Amherst, MA 01003, (413) tographs and illustrations used in this publication and 545-2717; or Mark Hoddle, Department of Entomol- produced the CD-ROM accompanying this book. -
Sites of Importance for Nature Conservation Wales Guidance (Pdf)
Wildlife Sites Guidance Wales A Guide to Develop Local Wildlife Systems in Wales Wildlife Sites Guidance Wales A Guide to Develop Local Wildlife Systems in Wales Foreword The Welsh Assembly Government’s Environment Strategy for Wales, published in May 2006, pays tribute to the intrinsic value of biodiversity – ‘the variety of life on earth’. The Strategy acknowledges the role biodiversity plays, not only in many natural processes, but also in the direct and indirect economic, social, aesthetic, cultural and spiritual benefits that we derive from it. The Strategy also acknowledges that pressures brought about by our own actions and by other factors, such as climate change, have resulted in damage to the biodiversity of Wales and calls for a halt to this loss and for the implementation of measures to bring about a recovery. Local Wildlife Sites provide essential support between and around our internationally and nationally designated nature sites and thus aid our efforts to build a more resilient network for nature in Wales. The Wildlife Sites Guidance derives from the shared knowledge and experience of people and organisations throughout Wales and beyond and provides a common point of reference for the most effective selection of Local Wildlife Sites. I am grateful to the Wales Biodiversity Partnership for developing the Wildlife Sites Guidance. The contribution and co-operation of organisations and individuals across Wales are vital to achieving our biodiversity targets. I hope that you will find the Wildlife Sites Guidance a useful tool in the battle against biodiversity loss and that you will ensure that it is used to its full potential in order to derive maximum benefit for the vitally important and valuable nature in Wales. -
Aneuraceae, Marchantiophytina)
European Journal of Taxonomy 273: 1–26 ISSN 2118-9773 http://dx.doi.org/10.5852/ejt.2017.273 www.europeanjournaloftaxonomy.eu 2017 · Rabeau L. et al. This work is licensed under a Creative Commons Attribution 3.0 License. DNA Library of Life, research article New insights into the phylogeny and relationships within the worldwide genus Riccardia (Aneuraceae, Marchantiophytina) Lucile RABEAU 1,*, S. Robbert GRADSTEIN 2, Jean-Yves DUBUISSON 3, Martin NEBEL 4, Dietmar QUANDT 5 & Catherine REEB 6 1,2,3,6 Université Pierre et Marie Curie – Sorbonne Universités – Institut de Systématique, Évolution, Biodiversité, ISYEB, UMR 7205, CNRS-MNHN-UPMC-EPHE, Muséum national d’Histoire naturelle, 57 rue Cuvier, CP 39, 75005 Paris, France. 4 Staatliches Museum für Naturkunde Stuttgart, Rosenstein 1, 70191 Stuttgart, Germany. 5 Nees-Institut für Biodiversität der Pfl anzen, Rheinische Friedrich-Wilhelms-Universität Bonn, Meckenheimer Allee 170, 53115 Bonn, Germany. * Corresponding author: [email protected] 2 Email: [email protected] 3 Email: [email protected] 4 Email: [email protected] 5 Email: [email protected] 6 Email: [email protected] Abstract. With 280 accepted species, the genus Riccardia S.F.Gray (Aneuraceae) is one of the most speciose genera of simple thalloid liverworts. The current classifi cation of this genus is based on morphological and limited-sampling molecular studies. Very few molecular data are available and a comprehensive view of evolutionary relationships within the genus is still lacking. A phylogeny focusing on relationships within the large genus Riccardia has not been conducted. Here we propose the fi rst worldwide molecular phylogeny of the genus Riccardia, based on Bayesian inference and parsimony ratchet analyses of sequences from three plastid regions (psbA-trnH, rps4, trnL-F). -
The Cordillera Del Cóndor Region of Ecuador and Peru: a Biological
7 Rapid Assessment Program The Cordillera del Cóndor 7 Region of Ecuador and Peru: ABiological Assessment RAP Wo r king RAP WORKING PAPERS Pa p e r s Conservation International 4 Participants is a non-profit organization 6 Organizational Profiles dedicated to the conserva- tion of tropical or temperate 8 Acknowledgments ecosystems and the species 16 Overview that rely on these habitats for their survival. 27 Summary of Results 31 Opportunities CI’s mission is to help develop the capacity to 37 Technical Report sustain biological diversity 37 Rio Nangaritza Basin and the ecological processes that support life on earth. 59 The Cóndor Region We work with the people The Cordillera del Cóndor 112 Appendices who live in tropical or temperate ecosystems, and with private organizations and government agencies, to assist in building sustain- able economies that nourish and protect the land. CI has programs in Latin America, Asia, and Africa. C ONSERVATION The Cordillera del Cóndor Conservation International Region of Ecuador and Peru: I 2501 M Street, NW NTERNATIONAL Suite 200 ABiological Assessment Washington, DC 20037 T 202.429.5660 F 202.887.0193 www.conservation.org CONSERVATION INTERNATIONAL ESCUELA POLITECNICA NACIONAL FEDIMA MUSEO DE HISTORIA NATURAL-UNMSM USAID #PCE-554-A-00-4020-00 CONSERVATION PRIORITIES: THE ROLE OF RAP Our planet faces many serious environmental problems, among them global climate change, pollution, soil erosion, and toxic waste disposal. At Conservation International (CI), we believe that there is one problem that surpasses all others in terms of importance because of its irreversibility, the extinction of biological diversity. Conservation efforts still receive only a tiny fraction of the resources, both human and financial, needed to get the job done. -
The Bryological Times Number 126 November 2008
______________________________________________________________________________________________________ The Bryological Times Number 126 November 2008 Newsletter of the International Association of Bryologists CONTENT IAB News • The IAB-congress 2009 in South Africa: an update ...................................................................................... 2 • Stanley W. Greene Award: call for proposals ............................................................................................... 2 • The IAB seeks new candidates and active collaborators ............................................................................. 2 Personal News ....................................................................................................................................................... 3 Field Research News • Post IAB 2007 conference field trip to the Cameron Highlands ................................................................... 3 Research Reports • Bryolat project ................................................................................................................................................... 5 • Herbarium news from Michigan ...................................................................................................................... 5 Theses in bryology ................................................................................................................................................. 6 Bryological exhibition ........................................................................................................................................... -
1 Assistant Conservation Scientist Genomics & Bioinformatics Chicago
CURRICULUM VITAE NORMAN J. WICKETT Assistant Conservation Scientist Lecturer Genomics & Bioinformatics Program of Biological Sciences Chicago Botanic Garden Northwestern University 1000 Lake Cook Road 6-120B Hogan Glencoe, IL 60022 Evanston, IL 60208 Phone: 847.835.8280 Phone: 847.467.2769 Fax: 847.835.5484 Fax: 847.467.0525 Email: [email protected] Email: [email protected] EDUCATION: PhD Ecology and Evolutionary Biology, University of Connecticut 2007 BSc Biology (Botany), University of British Columbia 2001 APPOINTMENTS: Research Associate, The Field Museum of Natural History, Chicago, IL. 2010 – present. Freshman Adviser, Northwestern University, Evanston, IL. September, 2011 – present. POSTDOCTORAL POSITIONS: Postdoctoral Research Fellow, Penn State University. Parasitic Plant Genome Project (Bioinformatics). September 2008 – August 2011. Postdoctoral Research Fellow, iPlant Collaborative/University of Georgia. 1KP (1000 plant transcriptomes) Initiative, computational and phylogenomics team. January 2011 – August 2011. Postdoctoral Research Fellow, University of Connecticut. Assembling the Liverwort Tree of Life, chloroplast genome sequencing. May 2007 – August 2008. GRANTS: National Science Foundation (DEB-0408043), 2004-2007. Doctoral Dissertation Improvement Grant. PIs NW Wickett and B Goffinet. $11,430. University of Connecticut, 2006. Doctoral Dissertation Fellowship. $2000. University of Connecticut, 2002 – 2006. Bamford Research Award. $4632. National Geographic Society, 2004. Committee for Research and Exploration Grant. $5000. 1 COURSES TAUGHT: Functional Genomics, Northwestern University. Winter, 2013 (BIOL SCI 378). The Nature of Plants. Northwestern University. Spring, 2012 (BIOL SCI 109-0). Understanding Evolution from Seaweed to Salad. Freshman Seminar, Northwestern University. Fall, 2011 (BIOL SCI 101-6, 16 students); Winter, 2012 (BIOL SCI 104-6, 12 students). Current Topics in Biology. Undergraduate Seminar, University of Connecticut (BIOL 296).