Real Basis Functions of Polyhedral Groups
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Symmetry of Fulleroids Stanislav Jendrol’, František Kardoš
Symmetry of Fulleroids Stanislav Jendrol’, František Kardoš To cite this version: Stanislav Jendrol’, František Kardoš. Symmetry of Fulleroids. Klaus D. Sattler. Handbook of Nanophysics: Clusters and Fullerenes, CRC Press, pp.28-1 - 28-13, 2010, 9781420075557. hal- 00966781 HAL Id: hal-00966781 https://hal.archives-ouvertes.fr/hal-00966781 Submitted on 27 Mar 2014 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. Symmetry of Fulleroids Stanislav Jendrol’ and Frantiˇsek Kardoˇs Institute of Mathematics, Faculty of Science, P. J. Saf´arikˇ University, Koˇsice Jesenn´a5, 041 54 Koˇsice, Slovakia +421 908 175 621; +421 904 321 185 [email protected]; [email protected] Contents 1 Symmetry of Fulleroids 2 1.1 Convexpolyhedraandplanargraphs . .... 3 1.2 Polyhedral symmetries and graph automorphisms . ........ 4 1.3 Pointsymmetrygroups. 5 1.4 Localrestrictions ............................... .. 10 1.5 Symmetryoffullerenes . .. 11 1.6 Icosahedralfulleroids . .... 12 1.7 Subgroups of Ih ................................. 15 1.8 Fulleroids with multi-pentagonal faces . ......... 16 1.9 Fulleroids with octahedral, prismatic, or pyramidal symmetry ........ 19 1.10 (5, 7)-fulleroids .................................. 20 1 Chapter 1 Symmetry of Fulleroids One of the important features of the structure of molecules is the presence of symmetry elements. -
Origin of Icosahedral Symmetry in Viruses
Origin of icosahedral symmetry in viruses Roya Zandi†‡, David Reguera†, Robijn F. Bruinsma§, William M. Gelbart†, and Joseph Rudnick§ Departments of †Chemistry and Biochemistry and §Physics and Astronomy, University of California, Los Angeles, CA 90095-1569 Communicated by Howard Reiss, University of California, Los Angeles, CA, August 11, 2004 (received for review February 2, 2004) With few exceptions, the shells (capsids) of sphere-like viruses (11). This problem is in turn related to one posed much earlier have the symmetry of an icosahedron and are composed of coat by Thomson (12), involving the optimal distribution of N proteins (subunits) assembled in special motifs, the T-number mutually repelling points on the surface of a sphere, and to the structures. Although the synthesis of artificial protein cages is a subsequently posed ‘‘covering’’ problem, where one deter- rapidly developing area of materials science, the design criteria for mines the arrangement of N overlapping disks of minimum self-assembled shells that can reproduce the remarkable properties diameter that allow complete coverage of the sphere surface of viral capsids are only beginning to be understood. We present (13). In a similar spirit, a self-assembly phase diagram has been here a minimal model for equilibrium capsid structure, introducing formulated for adhering hard disks (14). These models, which an explicit interaction between protein multimers (capsomers). all deal with identical capsomers, regularly produced capsid Using Monte Carlo simulation we show that the model reproduces symmetries lower than icosahedral. On the other hand, theo- the main structures of viruses in vivo (T-number icosahedra) and retical studies of viral assembly that assume icosahedral sym- important nonicosahedral structures (with octahedral and cubic metry are able to reproduce the CK motifs (15), and, most symmetry) observed in vitro. -
Platonic Solids Generate Their Four-Dimensional Analogues
1 Platonic solids generate their four-dimensional analogues PIERRE-PHILIPPE DECHANT a;b;c* aInstitute for Particle Physics Phenomenology, Ogden Centre for Fundamental Physics, Department of Physics, University of Durham, South Road, Durham, DH1 3LE, United Kingdom, bPhysics Department, Arizona State University, Tempe, AZ 85287-1604, United States, and cMathematics Department, University of York, Heslington, York, YO10 5GG, United Kingdom. E-mail: [email protected] Polytopes; Platonic Solids; 4-dimensional geometry; Clifford algebras; Spinors; Coxeter groups; Root systems; Quaternions; Representations; Symmetries; Trinities; McKay correspondence Abstract In this paper, we show how regular convex 4-polytopes – the analogues of the Platonic solids in four dimensions – can be constructed from three-dimensional considerations concerning the Platonic solids alone. Via the Cartan-Dieudonne´ theorem, the reflective symmetries of the arXiv:1307.6768v1 [math-ph] 25 Jul 2013 Platonic solids generate rotations. In a Clifford algebra framework, the space of spinors gen- erating such three-dimensional rotations has a natural four-dimensional Euclidean structure. The spinors arising from the Platonic Solids can thus in turn be interpreted as vertices in four- dimensional space, giving a simple construction of the 4D polytopes 16-cell, 24-cell, the F4 root system and the 600-cell. In particular, these polytopes have ‘mysterious’ symmetries, that are almost trivial when seen from the three-dimensional spinorial point of view. In fact, all these induced polytopes are also known to be root systems and thus generate rank-4 Coxeter PREPRINT: Acta Crystallographica Section A A Journal of the International Union of Crystallography 2 groups, which can be shown to be a general property of the spinor construction. -
The Cubic Groups
The Cubic Groups Baccalaureate Thesis in Electrical Engineering Author: Supervisor: Sana Zunic Dr. Wolfgang Herfort 0627758 Vienna University of Technology May 13, 2010 Contents 1 Concepts from Algebra 4 1.1 Groups . 4 1.2 Subgroups . 4 1.3 Actions . 5 2 Concepts from Crystallography 6 2.1 Space Groups and their Classification . 6 2.2 Motions in R3 ............................. 8 2.3 Cubic Lattices . 9 2.4 Space Groups with a Cubic Lattice . 10 3 The Octahedral Symmetry Groups 11 3.1 The Elements of O and Oh ..................... 11 3.2 A Presentation of Oh ......................... 14 3.3 The Subgroups of Oh ......................... 14 2 Abstract After introducing basics from (mathematical) crystallography we turn to the description of the octahedral symmetry groups { the symmetry group(s) of a cube. Preface The intention of this account is to provide a description of the octahedral sym- metry groups { symmetry group(s) of the cube. We first give the basic idea (without proofs) of mathematical crystallography, namely that the 219 space groups correspond to the 7 crystal systems. After this we come to describing cubic lattices { such ones that are built from \cubic cells". Finally, among the cubic lattices, we discuss briefly the ones on which O and Oh act. After this we provide lists of the elements and the subgroups of Oh. A presentation of Oh in terms of generators and relations { using the Dynkin diagram B3 is also given. It is our hope that this account is accessible to both { the mathematician and the engineer. The picture on the title page reflects Ha¨uy'sidea of crystal structure [4]. -
Systematics of Atomic Orbital Hybridization of Coordination Polyhedra: Role of F Orbitals
molecules Article Systematics of Atomic Orbital Hybridization of Coordination Polyhedra: Role of f Orbitals R. Bruce King Department of Chemistry, University of Georgia, Athens, GA 30602, USA; [email protected] Academic Editor: Vito Lippolis Received: 4 June 2020; Accepted: 29 June 2020; Published: 8 July 2020 Abstract: The combination of atomic orbitals to form hybrid orbitals of special symmetries can be related to the individual orbital polynomials. Using this approach, 8-orbital cubic hybridization can be shown to be sp3d3f requiring an f orbital, and 12-orbital hexagonal prismatic hybridization can be shown to be sp3d5f2g requiring a g orbital. The twists to convert a cube to a square antiprism and a hexagonal prism to a hexagonal antiprism eliminate the need for the highest nodality orbitals in the resulting hybrids. A trigonal twist of an Oh octahedron into a D3h trigonal prism can involve a gradual change of the pair of d orbitals in the corresponding sp3d2 hybrids. A similar trigonal twist of an Oh cuboctahedron into a D3h anticuboctahedron can likewise involve a gradual change in the three f orbitals in the corresponding sp3d5f3 hybrids. Keywords: coordination polyhedra; hybridization; atomic orbitals; f-block elements 1. Introduction In a series of papers in the 1990s, the author focused on the most favorable coordination polyhedra for sp3dn hybrids, such as those found in transition metal complexes. Such studies included an investigation of distortions from ideal symmetries in relatively symmetrical systems with molecular orbital degeneracies [1] In the ensuing quarter century, interest in actinide chemistry has generated an increasing interest in the involvement of f orbitals in coordination chemistry [2–7]. -
Binary Icosahedral Group and 600-Cell
Article Binary Icosahedral Group and 600-Cell Jihyun Choi and Jae-Hyouk Lee * Department of Mathematics, Ewha Womans University 52, Ewhayeodae-gil, Seodaemun-gu, Seoul 03760, Korea; [email protected] * Correspondence: [email protected]; Tel.: +82-2-3277-3346 Received: 10 July 2018; Accepted: 26 July 2018; Published: 7 August 2018 Abstract: In this article, we have an explicit description of the binary isosahedral group as a 600-cell. We introduce a method to construct binary polyhedral groups as a subset of quaternions H via spin map of SO(3). In addition, we show that the binary icosahedral group in H is the set of vertices of a 600-cell by applying the Coxeter–Dynkin diagram of H4. Keywords: binary polyhedral group; icosahedron; dodecahedron; 600-cell MSC: 52B10, 52B11, 52B15 1. Introduction The classification of finite subgroups in SLn(C) derives attention from various research areas in mathematics. Especially when n = 2, it is related to McKay correspondence and ADE singularity theory [1]. The list of finite subgroups of SL2(C) consists of cyclic groups (Zn), binary dihedral groups corresponded to the symmetry group of regular 2n-gons, and binary polyhedral groups related to regular polyhedra. These are related to the classification of regular polyhedrons known as Platonic solids. There are five platonic solids (tetrahedron, cubic, octahedron, dodecahedron, icosahedron), but, as a regular polyhedron and its dual polyhedron are associated with the same symmetry groups, there are only three binary polyhedral groups(binary tetrahedral group 2T, binary octahedral group 2O, binary icosahedral group 2I) related to regular polyhedrons. -
Can Every Face of a Polyhedron Have Many Sides ?
Can Every Face of a Polyhedron Have Many Sides ? Branko Grünbaum Dedicated to Joe Malkevitch, an old friend and colleague, who was always partial to polyhedra Abstract. The simple question of the title has many different answers, depending on the kinds of faces we are willing to consider, on the types of polyhedra we admit, and on the symmetries we require. Known results and open problems about this topic are presented. The main classes of objects considered here are the following, listed in increasing generality: Faces: convex n-gons, starshaped n-gons, simple n-gons –– for n ≥ 3. Polyhedra (in Euclidean 3-dimensional space): convex polyhedra, starshaped polyhedra, acoptic polyhedra, polyhedra with selfintersections. Symmetry properties of polyhedra P: Isohedron –– all faces of P in one orbit under the group of symmetries of P; monohedron –– all faces of P are mutually congru- ent; ekahedron –– all faces have of P the same number of sides (eka –– Sanskrit for "one"). If the number of sides is k, we shall use (k)-isohedron, (k)-monohedron, and (k)- ekahedron, as appropriate. We shall first describe the results that either can be found in the literature, or ob- tained by slight modifications of these. Then we shall show how two systematic ap- proaches can be used to obtain results that are better –– although in some cases less visu- ally attractive than the old ones. There are many possible combinations of these classes of faces, polyhedra and symmetries, but considerable reductions in their number are possible; we start with one of these, which is well known even if it is hard to give specific references for precisely the assertion of Theorem 1. -
On Polyhedra with Transitivity Properties
Discrete Comput Geom 1:195-199 (1986) iSCrete & Computathm~ ~) 1986 Springer-V©rlagometrvNew York Inc. IF On Polyhedra with Transitivity Properties J. M. Wills Mathematics Institute, University of Siegen, Hoelderlinstrasse 3, D-5900 Siegen, FRG Abstract. In a remarkable paper [4] Griinbaum and Shephard stated that there is no polyhedron of genus g > 0, such that its symmetry group acts transitively on its faces. If this condition is slightly weakened, one obtains" some interesting polyhedra with face-transitivity (resp. vertex-transitivity). In recent years several attempts have been/made to find polyhedral analogues for the Platonic solids in the Euclidean 3-space E 3 (cf. [1, 4, 5, 7-14]). By a polyhedron P we mean the union of a finite number of plane polygons in E 3 which form a 2-manifold without boundary and without self-intersections, where, as usual, a plane polygon is a plane set bounded by finitely many line segments. If the plane polygons are disjoint except for their edges, they are called the faces of P. We require adjacent faces to be non-coplanar. The vertices and edges of P are the vertices and edges of the faces of P. The genus of the underlying 2-manifold is the genus of P. A flag of P is a triplet consisting of one vertex, one edge incident with this vertex, and one face containing this edge. If, for given p- 3, q >- 3 all faces of P are p-gons and all vertices q-valent, we say that P is equivelar, i.e., has equal flags (cf. -
Polyhedral Harmonics
value is uncertain; 4 Gr a y d o n has suggested values of £estrap + A0 for the first three excited 4,4 + 0,1 v. e. states indicate 11,1 v.e. för D0. The value 6,34 v.e. for Dextrap for SO leads on A rough correlation between Dextrap and bond correction by 0,37 + 0,66 for the'valence states of type is evident for the more stable states of the the two atoms to D0 ^ 5,31 v.e., in approximate agreement with the precisely known value 5,184 v.e. diatomic molecules. Thus the bonds A = A and The valence state for nitrogen, at 27/100 F2 A = A between elements of the first short period (with 2D at 9/25 F2 and 2P at 3/5 F2), is calculated tend to have dissociation energy to the atomic to lie about 1,67 v.e. above the normal state, 4S, valence state equal to about 6,6 v.e. Examples that for the iso-electronic oxygen ion 0+ is 2,34 are 0+ X, 6,51; N2 B, 6,68; N2 a, 6,56; C2 A, v.e., and that for phosphorus is 1,05 v.e. above 7,05; C2 b, 6,55 v.e. An increase, presumably due their normal states. Similarly the bivalent states to the stabilizing effect of the partial ionic cha- of carbon, : C •, the nitrogen ion, : N • and racter of the double bond, is observed when the atoms differ by 0,5 in electronegativity: NO X, Silicon,:Si •, are 0,44 v.e., 0,64 v.e., and 0,28 v.e., 7,69; CN A, 7,62 v.e. -
Platonic Solids Generate Their Four-Dimensional Analogues
This is a repository copy of Platonic solids generate their four-dimensional analogues. White Rose Research Online URL for this paper: https://eprints.whiterose.ac.uk/85590/ Version: Accepted Version Article: Dechant, Pierre-Philippe orcid.org/0000-0002-4694-4010 (2013) Platonic solids generate their four-dimensional analogues. Acta Crystallographica Section A : Foundations of Crystallography. pp. 592-602. ISSN 1600-5724 https://doi.org/10.1107/S0108767313021442 Reuse Items deposited in White Rose Research Online are protected by copyright, with all rights reserved unless indicated otherwise. They may be downloaded and/or printed for private study, or other acts as permitted by national copyright laws. The publisher or other rights holders may allow further reproduction and re-use of the full text version. This is indicated by the licence information on the White Rose Research Online record for the item. Takedown If you consider content in White Rose Research Online to be in breach of UK law, please notify us by emailing [email protected] including the URL of the record and the reason for the withdrawal request. [email protected] https://eprints.whiterose.ac.uk/ 1 Platonic solids generate their four-dimensional analogues PIERRE-PHILIPPE DECHANT a,b,c* aInstitute for Particle Physics Phenomenology, Ogden Centre for Fundamental Physics, Department of Physics, University of Durham, South Road, Durham, DH1 3LE, United Kingdom, bPhysics Department, Arizona State University, Tempe, AZ 85287-1604, United States, and cMathematics Department, University of York, Heslington, York, YO10 5GG, United Kingdom. E-mail: [email protected] Polytopes; Platonic Solids; 4-dimensional geometry; Clifford algebras; Spinors; Coxeter groups; Root systems; Quaternions; Representations; Symmetries; Trinities; McKay correspondence Abstract In this paper, we show how regular convex 4-polytopes – the analogues of the Platonic solids in four dimensions – can be constructed from three-dimensional considerations concerning the Platonic solids alone. -
New Perspectives on Polyhedral Molecules and Their Crystal Structures Santiago Alvarez, Jorge Echeverria
New Perspectives on Polyhedral Molecules and their Crystal Structures Santiago Alvarez, Jorge Echeverria To cite this version: Santiago Alvarez, Jorge Echeverria. New Perspectives on Polyhedral Molecules and their Crystal Structures. Journal of Physical Organic Chemistry, Wiley, 2010, 23 (11), pp.1080. 10.1002/poc.1735. hal-00589441 HAL Id: hal-00589441 https://hal.archives-ouvertes.fr/hal-00589441 Submitted on 29 Apr 2011 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. Journal of Physical Organic Chemistry New Perspectives on Polyhedral Molecules and their Crystal Structures For Peer Review Journal: Journal of Physical Organic Chemistry Manuscript ID: POC-09-0305.R1 Wiley - Manuscript type: Research Article Date Submitted by the 06-Apr-2010 Author: Complete List of Authors: Alvarez, Santiago; Universitat de Barcelona, Departament de Quimica Inorganica Echeverria, Jorge; Universitat de Barcelona, Departament de Quimica Inorganica continuous shape measures, stereochemistry, shape maps, Keywords: polyhedranes http://mc.manuscriptcentral.com/poc Page 1 of 20 Journal of Physical Organic Chemistry 1 2 3 4 5 6 7 8 9 10 New Perspectives on Polyhedral Molecules and their Crystal Structures 11 12 Santiago Alvarez, Jorge Echeverría 13 14 15 Departament de Química Inorgànica and Institut de Química Teòrica i Computacional, 16 Universitat de Barcelona, Martí i Franquès 1-11, 08028 Barcelona (Spain). -
Computation of Real-Valued Basis Functions Which Transform As Irreducible Representations of the Polyhedral Groups
COMPUTATION OF REAL-VALUED BASIS FUNCTIONS WHICH TRANSFORM AS IRREDUCIBLE REPRESENTATIONS OF THE POLYHEDRAL GROUPS NAN XU∗ AND PETER C. DOERSCHUKy Abstract. Basis functions which are invariant under the operations of a rotational point group G are able to describe any 3-D object which exhibits the rotational point group symmetry. However, in order to characterize the spatial statistics of an ensemble of objects in which each object is different but the statistics exhibit the symmetry, a complete set of basis functions is required. In particular, for each irreducible representation (irrep) of G, it is necessary to include basis functions that transform according to that irrep. This complete set of basis functions is a basis for square- integrable functions on the surface of the sphere in 3-D. Because the objects are real-valued, it is convenient to have real-valued basis functions. In this paper the existence of such real-valued bases is proven and an algorithm for their computation is provided for the icosahedral I and the octahedral O symmetries. Furthermore, it is proven that such a real-valued basis does not exist for the tetrahedral T symmetry because some irreps of T are essentially complex. The importance of these basis functions to computations in single-particle cryo electron microscopy is described. Key words. polyhedral groups, real-valued matrix irreducible representations, numerical com- putation of similarity transformations, basis functions that transform as a row of an irreducible representation of a rotation group, Classical groups (02.20.Hj), Special functions (02.30.Gp). AMS subject classifications. 2604, 2004, 57S17, 57S25 1.