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© Cambridge University Press Cambridge Cambridge University Press 978-0-521-85485-6 - Sulphate-Reducing Bacteria: Environmental and Engineered Systems Edited by Larry L. Barton and W. Allan Hamilton Index More information Index 523 ABC permease 147 Antibiotic inhibition 386 Acetate kinase 148 APS reductase 7, 92, 96, 97, 101, 128, Acetivibrio FISH probe 60 133, 148, 197, 227, 229 Acetobacterium 388 ApsA 97, 101 Acetyl-CoA 11, 12, 14–16, 489 ArcAB regulon 204 Acetyl-CoA synthase 16, 450 Archaea 24, 39, 274 Acetyl-phosphate 11, 14 Archaea probe 42 Acetylserine sulfhydrylase 160 Archaeoblobus lithotrophicus 316 Acid mine waters 412, 419, 421 Archaeoglobus 1, 22, 24, 39, 99, 101, 306, Acid pH stress 145, 148, 156, 158 309, 316, 321, 350 Acidic fens 41 Archaeoglobus fulgidus 6, 16, 22, 102, Adenosine phosphosulphate 5, 7 123, 124, 131, 201, 227, 228, 310, 316, Aerotaxis 172 352, 440, 447, 450 Aggregation 171 Archaeoglobus probe 42 Agmatinase 158 Archaeoglobus profundus 6, 22, 310, 316, Alcaligenes eutrophus 246 321 Alcohol dehydrogenase 129, 219 Archaeoglobus veneficus 316, 321, 348 Alkaline pH stress 145, 148, 159 Arginine decarboxylase 158 Alkane utilization 281–3, 308 Aromatic hydrocarbons oxidized 289 Alkene utilization 287 Arsenate 14 Alkyl hydroperoxide reductase 148 Arsenate reductase 441, 447 Alkylbenzene utilization 281 Arsenate reduction 447, 448 Allochromatium vinosum 101, 228 Arsenic reduction 447 Alvinella pompejana symbiont 320 Arsenic transporter 441, 447 Aminobenzoate 490 Arsenical sulphides 410, 416 Ammonification 242, 256 Arsenite pump 441, 447 Anaerofilum FISH probe 60 ATP sulphurylase 7, 96, 133 Analysis of natural systems 89 ATP synthase 10, 147, 148, 154, 215, 243 Aniline 488, 489 ATPase 10, 157–9, 441 Anoxic layers 168 a-type haem 192 © Cambridge University Press www.cambridge.org Cambridge University Press 978-0-521-85485-6 - Sulphate-Reducing Bacteria: Environmental and Engineered Systems Edited by Larry L. Barton and W. Allan Hamilton Index More information Bacteria 39, 306, 364 Chondroitin sulphate 507, 508 Bacteria FISH probe 60 Chromate detoxification 445 Bacteria probe 42 Chromate reduction 414, 438, 440 Bacterioferritin 187, 188, 202 Chromate stress 145, 148, 195, 440 Bacteroides fragilis 170 Chromate transport 440, 441 bc1 complex 193 Chromosome size 124 bd- type oxygen reductase 187, 191, 192 Citric acid cycle 16 Bdellovibrio bacteriovorus 132 Clostridium FISH probe 60 Beggiatoa 171 CO cycling 215 Benzoyl CoA 490 Cobalamin 450 Bilophila wadsworthia 23, 99 Cobalt sorbents 394 Biofilm 159, 169, 360–2, 367, 373, 391, COD/sulphate ratio 387 406, 417, 459, 463, 469, 472, 510 Coenzyme B 9, 279 524 Biogeochemical cycling 405, 410 Coenzyme M 277, 278 Bioinformatical studies 131, 186–8 Cold stress 145, 148 Biophila wadsworthia FISH probe 60 Colonizing the gut wall 505 Bioreactors 386, 387 Community analysis 96 INDEX Bioremediation 405, 408, 452, 490 Community structure 360–2 Bisulphite disproportionation 5 Consortium 274, 490, 493 Bisulphite reductase 7, 9, 41, 92, 96, 99, CooMKLXUHF complex 11, 14, 128 101, 320 Copper inhibition 386 Bisulphite reduction 7 Copper sulphide 419 Bradyrhizobium japonicum 152 Corrosion 307, 360, 459, 460, 463, 469, BTEX utilization 282 472 b-type haem 191, 192 Corrosion models 465 Butyrate metabolism 514 Corrosion of alloys Butytyl CoA dehydrogenase 514 Corrosion of cables 460 Corrosion rates 461 C1-carrier 16 Corrosion reaction 461 caa3 oxygen reductase 192 Corrosive phosphorus 475 Caldivirga 39, 306 Cr(III) precipitates 445 Caldivirga maquilingensis 103 Crenarchaeote 39 Carbon mineralization 372 Crohn’s disease 513 Carbon monoxide 15, 16 Cryptanaerobacter FISH probe 60 Carbon monoxide dehydrogenase 15, c-type haem 191, 233, 440 16, 117, 124, 129, 219, 489 Cu(II) toxicity 131 Carboxydothermus hydroformans 99 Cysteine desulfurase 441, 448 Catalase 169, 188, 196, 198, 200, 202, Cysteine synthase 441 470 Cytochrome À decahaem 224 Cathodic depolarising and corrosion Cytochrome À octahaem 224 465–7 Cytochrome bd 170 Caulobacter crescentus 152 Cytochrome bd oxygen reductase 188 cbb3 oxidases 191 Cytochrome bd quinol:oxygen Cellulomonas 446 oxidoreductase, 192 Chaperones 152, 153 Cytochrome c 8, 9, 14, 128, 148, 155, Chemoclines 168 170, 192, 195, 203, 218, 219, 222, 227, Chloroflexi 349 232, 448, 468 © Cambridge University Press www.cambridge.org Cambridge University Press 978-0-521-85485-6 - Sulphate-Reducing Bacteria: Environmental and Engineered Systems Edited by Larry L. Barton and W. Allan Hamilton Index More information Cytochrome c oxidase 187 Desulfobacterium catecholicum 242 Cytochrome c3 222–4, 232, 414, 415, Desulfobacterium catecholicum FISH 425, 437, 439, 446, 448, 486 probe 60 Cytochrome c553 192, 193, 222, 224 Desulfobacterium cetonicum 283, 310, 313 Cytochrome c554 224 Desulfobacterium indolicum 487 Cytochrome c7 425, 437, 439 Desulfobacterium niacini FISH probe 60 Cytochrome in outer membrane 468 Desulfobacterium niacini probe 42 Desulfobacterium phenolicum 282 Denaturing gradient gel electrophoresis Desulfobacterium vacuolatum FISH (DGGE) 41 probe 60 Desulfacinum 24, 309, 318 Desulfobacterium vacuolatum probe 42 Desulfacinum hydrothermale 310, 320 Desulfobacula 24 Desulfacinum infernum 313, 320 Desulfobacula FISH probe 60 Desulfacium subterraneum 310 Desulfobacula phenolica 282 525 Desulfarculus 24 Desulfobacula toluolica 283, 284 Desulfarculus baarsii FISH probe 60 Desulfobibrionaceae 23 INDEX Desulfatibacillum 24 Desulfobotulus 24 Desulfatibacillumaliphaticivorans284,287 Desulfobotulus sapovorans FISH probe 60 Desulfatibacillum alkenivorans 284, 287 Desulfobulbaceae 24, 97, 124 Desulfitobacterium 99 Desulfobulbaceae FISH probe 60 Desulfitobacterium hafniense 470 Desulfobulbaceae probe 42 Desulfoacinum infernum 313 Desulfobulbus 1, 24, 41, 168, 274, 309, Desulfoacinum subterraneum 313 362, 364, 450, 504, 505 Desulfoarculus baarsii 97 Desulfobulbus FISH probe 60 Desulfobacca 24 Desulfobulbus mediterraneus 348 Desulfobacca acetoxidans probe 42 Desulfobulbus probe 366 Desulfobacter 1, 24, 168, 185, 320, 345, Desulfobulbus propionicus 12, 16, 242, 450, 470, 504, 505 243, 363 Desulfobacter anilini 489 Desulfobulbus rhabdoformis 310, 313 Desulfobacter FISH probe 60 Desulfocapsa 24 Desulfobacter postagatei 16, 117 Desulfocapsa thiozymogenes FISH probe Desulfobacter probe 42 60 Desulfobacter vibroformis 310 Desulfocella 24 Desulfobacterace 24, 364 Desulfocella FISH probe 60 Desulfobacteraceae FISH probe 60 Desulfococcus 24, 40, 41, 90, 91, 134, 168, Desulfobacteraceae probe 42 185, 274, 450, 470 Desulfobacterales probe 42 Desulfococcus FISH probe 60 Desulfobacteriaceae 22, 41, 97, 117, 124, Desulfococcus multivorans FISH probe 134 60, 489 Desulfobacterium 1, 24, 185, 309, 320, Desulfococcus probe 42 362, 450, 470 Desulfofaba 24 Desulfobacterium anilini 97, 99, 348, 489 Desulfofaba FISH probe 60 Desulfobacterium autotrophicum 117, Desulfofaba gelida FISH probe 60 124, 131, 320 Desulfofaba probe 42 Desulfobacterium autotrophicum FISH Desulfoferrodoxin 199 probe 60 Desulfofrigus 24, 40, 345 Desulfobacterium autotrophicum probe 42 Desulfofrigus FISH probe 60 © Cambridge University Press www.cambridge.org Cambridge University Press 978-0-521-85485-6 - Sulphate-Reducing Bacteria: Environmental and Engineered Systems Edited by Larry L. Barton and W. Allan Hamilton Index More information Desulfofrigus probe 42 Desulfosarcina FISH probe 60 Desulfofustis 24 Desulfosarcina probe 42 Desulfofustis FISH probe 60 Desulfosarcina variabilis FISH probe 60 Desulfohalobiaceae 24, 320 Desulfospira 24 Desulfohalobiaceae FISH probe 60 Desulfospira FISH probe 60 Desulfohalobium 24 Desulfosporomuse 39 Desulfomic cavernae 346 Desulfosporosinus 24, 39, 306, 314, 345, Desulfomic macestense 346 351 Desulfomicrobiaceae 24 Desulfosporosinus 446, 447 Desulfomicrobioaceae FISH probe 60 Desulfosporosinus probe 42 Desulfomicrobium (strain Ben-RB) 448 Desulfotalea 24, 345 Desulfomicrobium 24, 314, 345, 362, 416, Desulfotalea FISH probe 60 439 Desulfotalea psychrophila 6, 123, 124, 526 Desulfomicrobium aspheronum 310 127, 131, 203, 215, 222, 225, 226, 440, Desulfomicrobium baculatum 437 447, 450 Desulfomicrobium probe 42 Desulfothermus 24 Desulfomonas hansenii FISH probe 60 Desulfotignum 24 INDEX Desulfomonas pigra 504 Desulfotignum FISH probe 60 Desulfomonile 24, 41, 95 Desulfotomaculum (strain B 10) 350 Desulfomonile FISH probe 60 Desulfotomaculum (strain B2T ) 346 Desulfomonile probe 42 Desulfotomaculum 1, 22, 24, 39, 101, 168, Desulfomonile tiedjei 97 306, 314, 345, 350, 351, 504, 505 Desulfomonile tiedjei FISH probe 60 Desulfotomaculum FISH probe 60 Desulfomusa 24 Desulfotomaculum halophilum 310, 314, Desulfomusa FISH probe 60 315 Desulfonatronovibrio 24 Desulfotomaculum kuznetsovii 310, 314, Desulfonatronovibrio hydrogenovorans 320 346 Desulfonatronum 24 Desulfotomaculum nigrificans 310, 314 Desulfonatronum lacustre 348 Desulfotomaculum norvegicum 224, 437, Desulfonatronumaceae 24 439 Desulfonauticus 24, 318 Desulfotomaculum orientis 489 Desulfonauticus submarinus 310, 320 Desulfotomaculum probe 42 Desulfonema 90, 168, 172, 345, 362–4, Desulfotomaculum reducens MI-1 103 366 Desulfotomaculum thermobenzoicum 242 Desulfonema FISH probe 60 Desulfotomaculum thermocisternum 310, Desulfonema magnum 348 314, 315 Desulfonema probe 42 Desulfotomaculum thermosapovorans 348 Desulforegula 24 Desulfovibrio (strain B) 484 Desulforegula FISH probe 60, 362 Desulfovibrio (strain Ben-RA) 448 Desulforhabdus 24 Desulfovibrio 24, 40, 41, 91, 96, 168, 185, Desulforhabdus amnigena 320 306, 309, 314, 318, 345, 364, 388, 414, Desulforhopalus 24 439, 450, 470
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