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Aquatic Insects Are Dramatically Underrepresented in Genomic Research
insects Communication Aquatic Insects Are Dramatically Underrepresented in Genomic Research Scott Hotaling 1,* , Joanna L. Kelley 1 and Paul B. Frandsen 2,3,* 1 School of Biological Sciences, Washington State University, Pullman, WA 99164, USA; [email protected] 2 Department of Plant and Wildlife Sciences, Brigham Young University, Provo, UT 84062, USA 3 Data Science Lab, Smithsonian Institution, Washington, DC 20002, USA * Correspondence: [email protected] (S.H.); [email protected] (P.B.F.); Tel.: +1-(828)-507-9950 (S.H.); +1-(801)-422-2283 (P.B.F.) Received: 20 August 2020; Accepted: 3 September 2020; Published: 5 September 2020 Simple Summary: The genome is the basic evolutionary unit underpinning life on Earth. Knowing its sequence, including the many thousands of genes coding for proteins in an organism, empowers scientific discovery for both the focal organism and related species. Aquatic insects represent 10% of all insect diversity, can be found on every continent except Antarctica, and are key components of freshwater ecosystems. However, aquatic insect genome biology lags dramatically behind that of terrestrial insects. If genomic effort was spread evenly, one aquatic insect genome would be sequenced for every ~9 terrestrial insect genomes. Instead, ~24 terrestrial insect genomes have been sequenced for every aquatic insect genome. A lack of aquatic genomes is limiting research progress in the field at both fundamental and applied scales. We argue that the limited availability of aquatic insect genomes is not due to practical limitations—small body sizes or overly complex genomes—but instead reflects a lack of research interest. We call for targeted efforts to expand the availability of aquatic insect genomic resources to empower future research. -
Species Dossier: Hagenella Clathrata
Species dossier: Hagenella clathrata Window winged sedge July 2011 Mating adult pair Hagenella clathata Contact details Ian Wallace, Curator of Conchology & Aquatic Biology World Museum William Brown Street, Liverpool, L3 8EN Tel: 0151 478 4385 Email: [email protected] Species dossier: Hagenella clathrata Contents Introduction ................................................................................... 3 Summary....................................................................................... 3 Ecology ......................................................................................... 3 History in Britain ............................................................................ 6 European distribution .................................................................... 9 Recent Survey Work ..................................................................... 9 Survey methods ............................................................................ 9 Identification.................................................................................. 9 Threats........................................................................................ 10 Action plan for the Window Winged Sedge ( Hagenella clathrata ) 11 List of references......................................................................... 12 Appendix 2 Records of ( Hagenella clathrata ) from the UK ......... 15 Cover image © Matthew Wallace (2009) Hagenella clathrata (Kolenati, 1848) Window winged sedge (Trichoptera: Phryganeidae) Genus -
Insecta: Trichoptera) from the Ecoregion Hellenic Western Balkans
Nat. Croat. Vol. 26(2), 2017 197 NAT. CROAT. VOL. 26 No 2 197-204 ZAGREB DECEMBER 31, 2017 original scientific paper / izvorni znanstveni rad DOI 10.20302/NC.2017.26.16 FIRST RECORD OF TRIAENODES BICOLOR (CURTIS, 1834) (INSECTA: TRICHOPTERA) FROM THE ECOREGION HELLENIC WESTERN BALKANS Halil Ibrahimi1, Ruzhdi Kuçi2*, Astrit Bilalli3 & Ermira Gashi1 1Department of Biology, Faculty of Mathematical and Natural Sciences, University of Prishtina “Hasan Prishtina”, “Mother Theresa” p.n., 10 000 Prishtinë, Republic of Kosovo 2Faculty of Education, University of Prishtina “Hasan Prishtina”, “Mother Teresa” p.n., 10 000 Prishtinë, Republic of Kosovo 3Faculty of Agribusiness, University of Peja “Haxhi Zeka”, “UÇK” street, 30 000 Pejë, Republic of Kosovo Ibrahimi, H., Kuçi, R., Bilalli, A. & Gashi, E.: First record of Triaenodes bicolor (Curtis, 1834) (Insecta: Trichoptera) from the Ecoregion Hellenic Western Balkans. Nat. Croat., Vol. 26, No. 2., 197-204, Zagreb, 2017. We collected adult caddisfly specimens with entomological nets and ultraviolet light traps monthly from May to November 2012 in Brezne Lake situated in Dragash Municipality. During this investigation we found the Leptocerid species Triaenodes bicolor for the first time in Kosovo; it is also the first record for Ecoregion 6, Hellenic Western Balkans. Additionally, this is the first record of the genus Triaenodes from Kosovo. In total seven males and three females of this species were found. Triaenodes bicolor is present all over the European continent but has been rarely sampled in southeastern Europe. Other taxa sympatric with Triaenodes bicolor in the investigated locality are: Hydropsyche instabilis, Hydropsyche spp., Plectrocnemia conspersa, Plectrocnemia spp., Micropterna nycterobia, Micropterna sequax, Limnephilus vittatus, Limnephilus auricula and Thremma anomalum. -
Trichoptera:Hydropsychidae) Based on DNA and Morphological Evidence Christy Jo Geraci National Museum on Natural History, Smithsonian Institute
Clemson University TigerPrints Publications Biological Sciences 3-2010 Defining the Genus Hydropsyche (Trichoptera:Hydropsychidae) Based on DNA and Morphological Evidence Christy Jo Geraci National Museum on Natural History, Smithsonian Institute Xin Zhou University of Guelph John C. Morse Clemson University, [email protected] Karl M. Kjer Rutgers University - New Brunswick/Piscataway Follow this and additional works at: https://tigerprints.clemson.edu/bio_pubs Part of the Biology Commons Recommended Citation Please use publisher's recommended citation. This Article is brought to you for free and open access by the Biological Sciences at TigerPrints. It has been accepted for inclusion in Publications by an authorized administrator of TigerPrints. For more information, please contact [email protected]. J. N. Am. Benthol. Soc., 2010, 29(3):918–933 ’ 2010 by The North American Benthological Society DOI: 10.1899/09-031.1 Published online: 29 June 2010 Defining the genus Hydropsyche (Trichoptera:Hydropsychidae) based on DNA and morphological evidence Christy Jo Geraci1 Department of Entomology, National Museum of Natural History, Smithsonian Institution, Washington, DC 20013-7012 USA Xin Zhou2 Biodiversity Institute of Ontario, University of Guelph, Guelph, Ontario, N1G 2W1 Canada John C. Morse3 Department of Entomology, Soils, and Plant Sciences, Clemson University, Clemson, South Carolina 29634 USA Karl M. Kjer4 Department of Ecology, Evolution and Natural Resources, School of Environmental and Biological Sciences, Rutgers University, New Brunswick, New Jersey 08901 USA Abstract. In this paper, we review the history of Hydropsychinae genus-level classification and nomenclature and present new molecular evidence from mitochondrial cytochrome c oxidase subunit I (COI) and nuclear large subunit ribosomal ribonucleic acid (28S) markers supporting the monophyly of the genus Hydropsyche. -
Publications of Glenn B
Publications: Glenn B. Wiggins, Curator Emeritus, Entomology 2010 Wiggins, G.B. “No small matters. Introducing Biological Notes on an Old Farm: Exploring Common Things in the Kingdoms of Life.” ROM Magazine, 42(2): 29- 31. * 2009 Wiggins, G.B. Biological Notes on an Old Farm: Exploring Common Things in the Kingdoms of Life. Royal Ontario Museum, Toronto. 2008 Wiggins, G.B. and D.C. Currie. “Trichoptera Families.” In An Introduction to the Aquatic Insects of North America, edited by R.W. Merritt, K.W. Cummins, and M.B. Berg. Kendall/Hunt, Dubuque, Iowa (4th edition, revised). 2007 Wiggins, G.B. “Architects under water.” American Entomologist, 53(2): 78-85. 2005b Wiggins, G.B. “Review: Vernal pools, natural history and conservation by Elizabeth A. Colburn.” Journal of the North American Benthological Society, 24(4): 1009-1013. 2005a Vineyard, R.N., G.B. Wiggins, H.E. Frania, and P.W. Schefter. “The caddisfly genus Neophylax (Trichoptera: Uenoidae).” Royal Ontario Museum Contributions in Science, 2: 1-141. * 2004b Wiggins, G.B. Caddisflies: The Underwater Architects. University of Toronto Press. 2004a Wiggins, G.B. “Caddisflies: glimpses into evolutionary history.” Rotunda, 38(2): 32-39. 2002 Wiggins, G.B. “Biogeography of amphipolar caddisflies in the subfamily Dicosmoecinae (Trichoptera, Limnephilidae).” Mitteilungen aus dem Museum für Naturkunde in Berlin, Deutsche Entomologische Zeitschrift, 49(2002) 2: 227- 259. 2001 Wiggins, G.B. “Construction behavior for new pupal cases by case-making caddis larvae: Further comment. (Trichoptera: Integripalpia).” Braueria, 28: 7-9. 1999b Gall, W.K. and G.B. Wiggins. “Evidence bearing on a sister-group relationship between the families Phryganeidae and Plectrotarsidae (Trichoptera).” Proceedings of the Ninth International Symposium on Trichoptera, Chiang Mai, Thailand, 1998, edited by H. -
Vernal Pool Vernal Pool, Page 1 Michael A
Vernal Pool Vernal Pool, Page 1 Michael A. Kost Michael Overview: Vernal pools are small, isolated Introduction and Definitions: Temporary water wetlands that occur in forested settings throughout pools can occur throughout the world wherever the Michigan. Vernal pools experience cyclic periods ground or ice surface is concave and liquid water of water inundation and drying, typically filling gains temporarily exceed losses. The term “vernal with water in the spring or fall and drying during pool” has been widely applied to temporary pools the summer or in drought years. Substrates that normally reach maximum water levels in often consist of mineral soils underlain by an spring (Keeley and Zedler 1998, Colburn 2004). impermeable layer such as clay, and may be In northeastern North America, vernal pool and covered by a layer of interwoven fibrous roots similar interchangeable terms have focused even and dead leaves. Though relatively small, and more narrowly upon pools that are relatively small, sometimes overlooked, vernal pools provide critical are regularly but temporarily flooded, and are habitat for many plants and animals, including rare within wooded settings (Colburn 2004, Calhoun species and species with specialized adaptations for and deMaynadier 2008, Wisconsin DNR 2008, coping with temporary and variable hydroperiods. Ohio Vernal Pool Partnership 2009, Vermont Vernal pools are also referred to as vernal ponds, Fish & Wildlife Department 2004, Tesauro 2009, ephemeral ponds, ephemeral pools, temporary New York Natural Heritage Program 2009, pools, and seasonal wetlands. Commonwealth of Massachusetts Division of Michigan Natural Features Inventory P.O. Box 30444 - Lansing, MI 48909-7944 Phone: 517-373-1552 Vernal Pool, Page 2 Fisheries and Wildlife 2009, Maine Department of community types (see Kost et al. -
Part II: Potamyia Chinensis and Cheumatopsyche Trifascia
Zootaxa 4926 (4): 547–558 ISSN 1175-5326 (print edition) https://www.mapress.com/j/zt/ Article ZOOTAXA Copyright © 2021 Magnolia Press ISSN 1175-5334 (online edition) https://doi.org/10.11646/zootaxa.4926.4.5 http://zoobank.org/urn:lsid:zoobank.org:pub:0534BF0D-B6A7-4F0D-8991-F891F561ED9A The larvae of Chinese Hydropsychidae (Insecta: Trichoptera), Part II: Potamyia chinensis and Cheumatopsyche trifascia AO ZHANG1 & XIN ZHOU2* 1College of Science, China Agricultural University, Beijing, China 100193. �[email protected]; https://orcid.org/0000-0002-5668-1592 2Department of Entomology, College of Plant Protection, China Agricultural University, Beijing, China 100193. *Corresponding author. �[email protected]; https://orcid.org/0000-0002-1407-7952 Abstract The larvae of Chinese caddisflies Potamyia chinensis and Cheumatopsyche trifascia were successfully associated with identifiable adults using independent DNA markers, mitochondrial COI barcodes and nuclear ribosomal 28S D2 genes. A total of 49 specimens collected in China were employed in the molecular analyses. The two markers were congruent on species boundaries for 11 distinctive haplogroups, while D2 failed in differentiating two closely related species. A brief summary for larval studies of both genera is given, followed by an introduction to the generic morphological characteristics, and detailed morphological descriptions and illustrations for the two successfully associated species. The larva of P. chinensis is re-described here based on Chinese materials, following the previous larval description for P. echigoensis, which was recently synonymized with P. chinensis. Key words: caddisfly, life-stage association, China, DNA barcoding, COI, 28S D2 Introduction Molecular taxonomy uses nucleotide sequences to facilitate species delineation and identification. -
Trichopterological Literature 53-59 © Hans Malicky/Austria; Download Unter 53
ZOBODAT - www.zobodat.at Zoologisch-Botanische Datenbank/Zoological-Botanical Database Digitale Literatur/Digital Literature Zeitschrift/Journal: Braueria Jahr/Year: 2007 Band/Volume: 34 Autor(en)/Author(s): Malicky Hans Artikel/Article: Trichopterological literature 53-59 © Hans Malicky/Austria; download unter www.biologiezentrum.at 53 Trichopterological literature Nijboer, Rebi 2004 The ecological requirements of Agapetus fuscipes (Glossosomatidae), a characteristic species in unimpacted streams. 2003 -Limnologica 34:213-223. Keiper.J.B., Bartolotta.R.J. 2003 Petersen.l., Masters.Z., Hildrew.A.G., Ormerod.S.J. 2004 Taxonomic and ecological notes on Leucotrichia pictipes Dispersal of adult aquatic insects in catchments of differing land (Trichoptera: Hydroptilidae), a microcaddisfly newly recorded from use.-J.Appl.Ecol. 41:934-950. Ohio, U.S.A. - Entomol.News 114:255-259. Schmera.D.; Eros.T. 2004 Lukas, Jozef; Krno, llja 2003 Effect of riverbed morphology, stream order and season on the Caddisflies (Trichoptera) of the Gidra River basin. - Acta structural and functional attributes of caddisfly assemblages Zoolog.Univers.Comenianae 45:69-75. (Insecta, Trichoptera). -Annales de Limnologie 40:193-200. Szczçsny, Bronislaw 2003 Ruiz-Garcia,A.; Salamanca-Ocana.J.C; Ferreras-Romero.M. 2004 Fauna chruscików Trichoptera Babiej Góry (Karpaty Zachodnie). - The larvae of Allogamus gibraltaricus Gonzalez & Ruiz, 2001 and Monografia Fauny Babiej Góry 2003:251-277. Allogamus mortoni (Navâs, 1907) (Trichoptera, Limnephilidae), two endemic species of the Iberian Peninsula. - Annales de Limnologie Umeozor, O.C. 2003 40:343-349. Trichoptera of the lower Niger delta, Nigeria: species composition and relative abundance. - Tropical Freshw. Biol. 12-13:1-7. Shan,Lin-na; Yang,Lian-fang; Wang,Bei-xin 2004 Wallace, Ian 2003 Association of larval and adult stages of ecologically important Managing priority habitats for invertebrates; vol. -
Dna Barcodes, Partitioned Phylogenetic Models, And
LARGE DATASETS AND TRICHOPTERA PHYLOGENETICS: DNA BARCODES, PARTITIONED PHYLOGENETIC MODELS, AND THE EVOLUTION OF PHRYGANEIDAE By PAUL BRYAN FRANDSEN A dissertation submitted to the Graduate School-New Brunswick Rutgers, The State University of New Jersey In partial fulfillment of the requirements For the degree of Doctor of Philosophy Graduate Program in Entomology Written under the direction of Karl M. Kjer And approved by _____________________________________ _____________________________________ _____________________________________ _____________________________________ New Brunswick, New Jersey OCTOBER 2015 ABSTRACT OF THE DISSERTATION Large datasets and Trichoptera phylogenetics: DNA barcodes, partitioned phylogenetic models, and the evolution of Phryganeidae By PAUL BRYAN FRANDSEN Dissertation Director: Karl M. Kjer Large datasets in phylogenetics—those with a large number of taxa, e.g. DNA barcode data sets, and those with a large amount of sequence data per taxon, e.g. data sets generated from high throughput sequencing—pose both exciting possibilities and interesting analytical problems. The analysis of both types of large datasets is explored in this dissertation. First, the use of DNA barcodes in phylogenetics is investigated via the generation of phylogenetic trees for known monophyletic clades. Barcodes are found to be useful in shallow scale phylogenetic analyses when given a well-supported scaffold on which to place them. One of the analytical challenges posed by large phylogenetic datasets is the selection of appropriate partitioned models of molecular evolution. The most commonly used model partitioning strategies can fail to characterize the true variation of the evolutionary process and this effect can be exacerbated when applied to large datasets. A new, scalable algorithm for the automatic selection ! ii! of partitioned models of molecular evolution is proposed with an eye toward reducing systematic error in phylogenomics. -
Ours to Save: the Distribution, Status & Conservation Needs of Canada's Endemic Species
Ours to Save The distribution, status & conservation needs of Canada’s endemic species June 4, 2020 Version 1.0 Ours to Save: The distribution, status & conservation needs of Canada’s endemic species Additional information and updates to the report can be found at the project website: natureconservancy.ca/ourstosave Suggested citation: Enns, Amie, Dan Kraus and Andrea Hebb. 2020. Ours to save: the distribution, status and conservation needs of Canada’s endemic species. NatureServe Canada and Nature Conservancy of Canada. Report prepared by Amie Enns (NatureServe Canada) and Dan Kraus (Nature Conservancy of Canada). Mapping and analysis by Andrea Hebb (Nature Conservancy of Canada). Cover photo credits (l-r): Wood Bison, canadianosprey, iNaturalist; Yukon Draba, Sean Blaney, iNaturalist; Salt Marsh Copper, Colin Jones, iNaturalist About NatureServe Canada A registered Canadian charity, NatureServe Canada and its network of Canadian Conservation Data Centres (CDCs) work together and with other government and non-government organizations to develop, manage, and distribute authoritative knowledge regarding Canada’s plants, animals, and ecosystems. NatureServe Canada and the Canadian CDCs are members of the international NatureServe Network, spanning over 80 CDCs in the Americas. NatureServe Canada is the Canadian affiliate of NatureServe, based in Arlington, Virginia, which provides scientific and technical support to the international network. About the Nature Conservancy of Canada The Nature Conservancy of Canada (NCC) works to protect our country’s most precious natural places. Proudly Canadian, we empower people to safeguard the lands and waters that sustain life. Since 1962, NCC and its partners have helped to protect 14 million hectares (35 million acres), coast to coast to coast. -
Proceedings of the 15Th International Symposium on Trichoptera
Zoosymposia 14: 006–015 (2019) ISSN 1178-9905 (print edition) http://www.mapress.com/j/zs/ ZOOSYMPOSIA Copyright © 2019 · Magnolia Press ISSN 1178-9913 (online edition) http://dx.doi.org/10.11646/zoosymposia.14.1.3 http://zoobank.org/urn:lsid:zoobank.org:pub:44109852-25DE-4B82-8596-4C18C4A4A04C PREFACE: Proceedings of the 15th International Symposium on Trichoptera PATINA K. MENDEZ1, JOSEPH C. SPAGNA2, RALPH W. HOLZENTHAL3 & DAVID C. HOUGHTON4 1Department of Environmental Science, Policy & Management, University of California, Berkeley, 130 Mulford Hall #3114, Berkeley, CA 94720, [email protected] 2Biology Department, William Paterson University, 300 Pompton Rd, Wayne, NJ 07470, [email protected] 3Ralph W. Holzenthal, Department of Entomology, University of Minnesota, 1980 Folwell Ave, St. Paul, MN 55108, [email protected] 4David C. Houghton, Department of Biology, Hillsdale College, 33 E College St, Hillsdale, MI 49242, [email protected] The 15th International Symposium on Trichoptera found the world caddisfly community once again in the United States of America, 4-8 June 2015. This second US-based symposium was hosted at Rutgers University, New Brunswick in the Garden State of New Jersey. The 8th International Symposium, the last meeting in the United States, occurred 20 years before at the University of Minnesota in Minneapolis and at Lake Itasca, headwaters of the Mississippi River. Meeting Conveners Karl Kjer, Sheri Sheldorf, and Paul Frandsen hosted the meeting, planning many of the activities and local arrangements. Sheri Sheldorf and Carol Flint led the partners program. Contributions of many Rutgers University undergraduate students helped participants and organized resources. We especially thank Julianne McLaughlin, Jade Shevchenko, and Achmad Bakhtiar Yuni. -
Nabs 2004 Final
CURRENT AND SELECTED BIBLIOGRAPHIES ON BENTHIC BIOLOGY 2004 Published August, 2005 North American Benthological Society 2 FOREWORD “Current and Selected Bibliographies on Benthic Biology” is published annu- ally for the members of the North American Benthological Society, and summarizes titles of articles published during the previous year. Pertinent titles prior to that year are also included if they have not been cited in previous reviews. I wish to thank each of the members of the NABS Literature Review Committee for providing bibliographic information for the 2004 NABS BIBLIOGRAPHY. I would also like to thank Elizabeth Wohlgemuth, INHS Librarian, and library assis- tants Anna FitzSimmons, Jessica Beverly, and Elizabeth Day, for their assistance in putting the 2004 bibliography together. Membership in the North American Benthological Society may be obtained by contacting Ms. Lucinda B. Johnson, Natural Resources Research Institute, Uni- versity of Minnesota, 5013 Miller Trunk Highway, Duluth, MN 55811. Phone: 218/720-4251. email:[email protected]. Dr. Donald W. Webb, Editor NABS Bibliography Illinois Natural History Survey Center for Biodiversity 607 East Peabody Drive Champaign, IL 61820 217/333-6846 e-mail: [email protected] 3 CONTENTS PERIPHYTON: Christine L. Weilhoefer, Environmental Science and Resources, Portland State University, Portland, O97207.................................5 ANNELIDA (Oligochaeta, etc.): Mark J. Wetzel, Center for Biodiversity, Illinois Natural History Survey, 607 East Peabody Drive, Champaign, IL 61820.................................................................................................................6 ANNELIDA (Hirudinea): Donald J. Klemm, Ecosystems Research Branch (MS-642), Ecological Exposure Research Division, National Exposure Re- search Laboratory, Office of Research & Development, U.S. Environmental Protection Agency, 26 W. Martin Luther King Dr., Cincinnati, OH 45268- 0001 and William E.