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High Levels of Gene Flow in the California Vole (Microtus Californicus) Are Consistent Across Spatial Scales," Western North American Naturalist: Vol
Western North American Naturalist Volume 70 Number 3 Article 3 10-11-2010 High levels of gene flow in the California olev (Microtus californicus) are consistent across spatial scales Rachel I. Adams Stanford University, Stanford, California, [email protected] Elizabeth A. Hadly Stanford University, Stanford, California, [email protected] Follow this and additional works at: https://scholarsarchive.byu.edu/wnan Recommended Citation Adams, Rachel I. and Hadly, Elizabeth A. (2010) "High levels of gene flow in the California vole (Microtus californicus) are consistent across spatial scales," Western North American Naturalist: Vol. 70 : No. 3 , Article 3. Available at: https://scholarsarchive.byu.edu/wnan/vol70/iss3/3 This Article is brought to you for free and open access by the Western North American Naturalist Publications at BYU ScholarsArchive. It has been accepted for inclusion in Western North American Naturalist by an authorized editor of BYU ScholarsArchive. For more information, please contact [email protected], [email protected]. Western North American Naturalist 70(3), © 2010, pp. 296–311 HIGH LEVELS OF GENE FLOW IN THE CALIFORNIA VOLE (MICROTUS CALIFORNICUS) ARE CONSISTENT ACROSS SPATIAL SCALES Rachel I. Adams1,2 and Elizabeth A. Hadly1 ABSTRACT.—Gene flow links the genetic and demographic structures of species. Despite the fact that similar genetic and demographic patterns shape both local population structure and regional phylogeography, the 2 levels of population connectivity are rarely studied simultaneously. Here, we studied gene flow in the California vole (Microtus californicus), a small-bodied rodent with limited vagility but high local abundance. Within a 4.86-km2 preserve in central California, genetic diversity in 6 microsatellites was high, and Bayesian methods indicated a single genetic cluster. -
Classification of Mammals 61
© Jones & Bartlett Learning, LLC © Jones & Bartlett Learning, LLC NOT FORCHAPTER SALE OR DISTRIBUTION NOT FOR SALE OR DISTRIBUTION Classification © Jones & Bartlett Learning, LLC © Jones & Bartlett Learning, LLC 4 NOT FORof SALE MammalsOR DISTRIBUTION NOT FOR SALE OR DISTRIBUTION © Jones & Bartlett Learning, LLC © Jones & Bartlett Learning, LLC NOT FOR SALE OR DISTRIBUTION NOT FOR SALE OR DISTRIBUTION © Jones & Bartlett Learning, LLC © Jones & Bartlett Learning, LLC NOT FOR SALE OR DISTRIBUTION NOT FOR SALE OR DISTRIBUTION © Jones & Bartlett Learning, LLC © Jones & Bartlett Learning, LLC NOT FOR SALE OR DISTRIBUTION NOT FOR SALE OR DISTRIBUTION © Jones & Bartlett Learning, LLC © Jones & Bartlett Learning, LLC NOT FOR SALE OR DISTRIBUTION NOT FOR SALE OR DISTRIBUTION © Jones & Bartlett Learning, LLC © Jones & Bartlett Learning, LLC NOT FOR SALE OR DISTRIBUTION NOT FOR SALE OR DISTRIBUTION © Jones & Bartlett Learning, LLC © Jones & Bartlett Learning, LLC NOT FOR SALE OR DISTRIBUTION NOT FOR SALE OR DISTRIBUTION © Jones & Bartlett Learning, LLC © Jones & Bartlett Learning, LLC NOT FOR SALE OR DISTRIBUTION NOT FOR SALE OR DISTRIBUTION © Jones & Bartlett Learning, LLC © Jones & Bartlett Learning, LLC NOT FOR SALE OR DISTRIBUTION NOT FOR SALE OR DISTRIBUTION © Jones & Bartlett Learning, LLC. NOT FOR SALE OR DISTRIBUTION. 2ND PAGES 9781284032093_CH04_0060.indd 60 8/28/13 12:08 PM CHAPTER 4: Classification of Mammals 61 © Jones Despite& Bartlett their Learning,remarkable success, LLC mammals are much less© Jones stress & onBartlett the taxonomic Learning, aspect LLCof mammalogy, but rather as diverse than are most invertebrate groups. This is probably an attempt to provide students with sufficient information NOT FOR SALE OR DISTRIBUTION NOT FORattributable SALE OR to theirDISTRIBUTION far greater individual size, to the high on the various kinds of mammals to make the subsequent energy requirements of endothermy, and thus to the inabil- discussions of mammalian biology meaningful. -
Mammals of the California Desert
MAMMALS OF THE CALIFORNIA DESERT William F. Laudenslayer, Jr. Karen Boyer Buckingham Theodore A. Rado INTRODUCTION I ,+! The desert lands of southern California (Figure 1) support a rich variety of wildlife, of which mammals comprise an important element. Of the 19 living orders of mammals known in the world i- *- loday, nine are represented in the California desert15. Ninety-seven mammal species are known to t ':i he in this area. The southwestern United States has a larger number of mammal subspecies than my other continental area of comparable size (Hall 1981). This high degree of subspeciation, which f I;, ; leads to the development of new species, seems to be due to the great variation in topography, , , elevation, temperature, soils, and isolation caused by natural barriers. The order Rodentia may be k., 2:' , considered the most successful of the mammalian taxa in the desert; it is represented by 48 species Lc - occupying a wide variety of habitats. Bats comprise the second largest contingent of species. Of the 97 mammal species, 48 are found throughout the desert; the remaining 49 occur peripherally, with many restricted to the bordering mountain ranges or the Colorado River Valley. Four of the 97 I ?$ are non-native, having been introduced into the California desert. These are the Virginia opossum, ' >% Rocky Mountain mule deer, horse, and burro. Table 1 lists the desert mammals and their range 1 ;>?-axurrence as well as their current status of endangerment as determined by the U.S. fish and $' Wildlife Service (USWS 1989, 1990) and the California Department of Fish and Game (Calif. -
Safe Harbor Agreement
SAFE HARBOR AGREEMENT FOR THE RE-INTRODUCTION OF THE AMARGOSA VOLE (Microtus californicus scirpensis), IN SHOSHONE, CALIFORNIA Prepared by U.S. Fish and Wildlife Service, Carlsbad Fish and Wildlife Office and Susan Sorrells July 7, 2020 2 Table of Contents 1.0 INTRODUCTION ............................................................................................................ 5 Purpose .................................................................................................................................... 5 Enrolled Lands and Core Area ................................................................................................ 5 Regulatory Framework ........................................................................................................... 5 SHA Standard and Background .............................................................................................. 6 Assurances Provided ............................................................................................................... 6 Relationship to Other Agreements .......................................................................................... 6 2.0 STATUS AND BACKGROUND OF AMARGOSA VOLE .......................................... 7 2.1 Status and Distribution ................................................................................................. 7 2.2 Life History and Habitat Requirements ........................................................................ 8 2.3 Threats ....................................................................................................................... -
The Beaver's Phylogenetic Lineage Illuminated by Retroposon Reads
www.nature.com/scientificreports OPEN The Beaver’s Phylogenetic Lineage Illuminated by Retroposon Reads Liliya Doronina1,*, Andreas Matzke1,*, Gennady Churakov1,2, Monika Stoll3, Andreas Huge3 & Jürgen Schmitz1 Received: 13 October 2016 Solving problematic phylogenetic relationships often requires high quality genome data. However, Accepted: 25 January 2017 for many organisms such data are still not available. Among rodents, the phylogenetic position of the Published: 03 March 2017 beaver has always attracted special interest. The arrangement of the beaver’s masseter (jaw-closer) muscle once suggested a strong affinity to some sciurid rodents (e.g., squirrels), placing them in the Sciuromorpha suborder. Modern molecular data, however, suggested a closer relationship of beaver to the representatives of the mouse-related clade, but significant data from virtually homoplasy- free markers (for example retroposon insertions) for the exact position of the beaver have not been available. We derived a gross genome assembly from deposited genomic Illumina paired-end reads and extracted thousands of potential phylogenetically informative retroposon markers using the new bioinformatics coordinate extractor fastCOEX, enabling us to evaluate different hypotheses for the phylogenetic position of the beaver. Comparative results provided significant support for a clear relationship between beavers (Castoridae) and kangaroo rat-related species (Geomyoidea) (p < 0.0015, six markers, no conflicting data) within a significantly supported mouse-related clade (including Myodonta, Anomaluromorpha, and Castorimorpha) (p < 0.0015, six markers, no conflicting data). Most of an organism’s phylogenetic history is fossilized in their heritable genomic material. Using data from genome sequencing projects, particularly informative regions of this material can be extracted in sufficient num- bers to resolve the deepest history of speciation. -
Platypus Collins, L.R
AUSTRALIAN MAMMALS BIOLOGY AND CAPTIVE MANAGEMENT Stephen Jackson © CSIRO 2003 All rights reserved. Except under the conditions described in the Australian Copyright Act 1968 and subsequent amendments, no part of this publication may be reproduced, stored in a retrieval system or transmitted in any form or by any means, electronic, mechanical, photocopying, recording, duplicating or otherwise, without the prior permission of the copyright owner. Contact CSIRO PUBLISHING for all permission requests. National Library of Australia Cataloguing-in-Publication entry Jackson, Stephen M. Australian mammals: Biology and captive management Bibliography. ISBN 0 643 06635 7. 1. Mammals – Australia. 2. Captive mammals. I. Title. 599.0994 Available from CSIRO PUBLISHING 150 Oxford Street (PO Box 1139) Collingwood VIC 3066 Australia Telephone: +61 3 9662 7666 Local call: 1300 788 000 (Australia only) Fax: +61 3 9662 7555 Email: [email protected] Web site: www.publish.csiro.au Cover photos courtesy Stephen Jackson, Esther Beaton and Nick Alexander Set in Minion and Optima Cover and text design by James Kelly Typeset by Desktop Concepts Pty Ltd Printed in Australia by Ligare REFERENCES reserved. Chapter 1 – Platypus Collins, L.R. (1973) Monotremes and Marsupials: A Reference for Zoological Institutions. Smithsonian Institution Press, rights Austin, M.A. (1997) A Practical Guide to the Successful Washington. All Handrearing of Tasmanian Marsupials. Regal Publications, Collins, G.H., Whittington, R.J. & Canfield, P.J. (1986) Melbourne. Theileria ornithorhynchi Mackerras, 1959 in the platypus, 2003. Beaven, M. (1997) Hand rearing of a juvenile platypus. Ornithorhynchus anatinus (Shaw). Journal of Wildlife Proceedings of the ASZK/ARAZPA Conference. 16–20 March. -
Plant and Rodent Communities of Organ Pipe Cactus National Monument
Plant and rodent communities of Organ Pipe Cactus National Monument Item Type text; Thesis-Reproduction (electronic) Authors Warren, Peter Lynd Publisher The University of Arizona. Rights Copyright © is held by the author. Digital access to this material is made possible by the University Libraries, University of Arizona. Further transmission, reproduction or presentation (such as public display or performance) of protected items is prohibited except with permission of the author. Download date 29/09/2021 16:51:51 Link to Item http://hdl.handle.net/10150/566520 PLANT AND RODENT COMMUNITIES OF ORGAN PIPE CACTUS NATIONAL.MONUMENT by Peter Lynd Warren A Thesis Submitted to the Faculty of the DEPARTMENT OF ECOLOGY AND EVOLUTIONARY BIOLOGY In Partial Fulfillment of the Requirements For the Degree of MASTER OF SCIENCE In the Graduate College THE UNIVERSITY OF ARIZONA 1 9 7 9 STATEMENT BY AUTHOR This thesis has been submitted in partial fulfillment of re quirements for an advanced degree at The University of Arizona and is deposited in the University Library to be made available to borrowers under rules of the Library. Brief quotations from this thesis are allowable without special permission, provided that accurate acknowledgment of source is made. Requests for permission for extended quotation from or reproduction of this manuscript in whole or in part may be granted by the head of the major department or the Dean of the Graduate College when in his judg ment the proposed use of the material is in the interests of scholar ship. In all other instances, however, permission must be obtained from the author. -
91 Table F-10 Golden Eagle REA Mitigation
91 Table F-10 Golden Eagle REA Mitigation: Extrapolation of the Relative Productivity of Electric Pole Retrofitting in 2011 Over the 30 Years Associated with the Average Life Cycle of Wind Energy Projects Table F-11 Golden Eagle REA Scaling: Mitigation Owed for a 5-Year Permitted Take of 25 Golden Eagles (5 Eagles Annually) (REA Step 16) Total Debit 485.74 PV bird-years for 5 years of Golden Eagle take ÷ Relative Productivity of Electric Pole Retrofitting ÷4.20 Avoided loss of PV bird-years per retrofitted pole = Mitigation owed =115.61 Poles to be retrofitted to achieve no net loss PV=Present Value 92 APPENDIX G COMPENSATORY MITIGATION CASE STUDY7: POWER POLE RETROFITTING TO COMPENSATE FOR TAKE OF GOLDEN EAGLES To offset projected and permitted take, retrofitting of non- Avian Power Line Interaction Committee (APLIC) compliant power poles has been selected by the Service as the initial focus of compensatory mitigation projects. Raptor electrocution is a known source of eagle mortality in the United States (Franson et al. 1995, Millsap et al. 2004, APLIC 2006, Lehman et al. 2007, Lehman et al. 2010). In particular, Golden Eagles are electrocuted more than any other raptor in North America; Lehman et al. (2007) noted Golden Eagles accounted for 50 – 93% of all reported mortalities of raptor electrocutions. Eagles often come into contact with non-APLIC compliant electric transmission poles. These poles are often responsible for the high incidence of eagle mortality, especially in open habitat devoid of natural perches. Specific utility poles and line spans in need of retrofit due to known mortalities of eagles and other large raptors will be reviewed by the Service and selected for retrofit based on criteria specified below. -
Spatial and Temporal Continuity of Kangaroo Rat Populations Shown by Sequencing Mitochondrial DNA from Museum Specimens
Spatial and Temporal Continuity of Kangaroo Rat Populations Shown by Sequencing Mitochondrial DNA from Museum Specimens W. Kelley Thomas, Svante Paabo, Francis X. Villablanca, and Allan C. Wilson Surnmary. The advent ofdirect sequencing via the region - tRNA genes - Population dynamics POlymerase chain reaction (PCR) has opened up the Population tree- Molecular trees Possibility of molecular studies on museum speci ~~ns. Here we analyze genetic variation in popu attons over time by applying PCR to DNA extract Introduction ed from museum specimens sampled from iPulations of one species over the last 78 years. Over the past 10 years, mitochondrial DNA ncluded in this study were 43 museum specimens (mtDNA) has been a productive source of infor o_fthe Panamint kangaroo rat Dipodomys panamin mation about genetic variation at and below the lLnu.s from localities representing each ofthree geo species level (for reviews, see Wilson et al. 1985; graphically distinct subspecies. These specimens Hamson 1988). However, because these studies have :were originally collected and prepared as dried skins been restricted to the analysis of present-day pop 10 19 11 , 1917, or 1937. For each specimen, a 225 ulations, they represent a static view ofthe historic bp segment of the mitochondrial genome was se processes that shape the genetic variation detected quenced. These mitochondrial DNA sequences were in contemporary populations. Due to recent tech compared to those of 63 specimens collected at the nical advances brought about by the polymerase same localities in 1988. The three subspecies were chain reaction (PCR) (Kocher et al. 1989; Paabo et n~a rl y completely distinct. -
Ecological Niche Evolution and Its Relation To
514 G. Shenbrot Сборник трудов Зоологического музея МГУ им. М.В. Ломоносова Archives of Zoological Museum of Lomonosov Moscow State University Том / Vol. 54 Cтр. / Pр. 514–540 ECOLOGICAL NICHE EVOLUTION AND ITS RELATION TO PHYLOGENY AND GEOGRAPHY: A CASE STUDY OF ARVICOLINE VOLES (RODENTIA: ARVICOLINI) Georgy Shenbrot Mitrani Department of Desert Ecology, Jacob Blaustein Institutes for Desert Research, Ben-Gurion University of the Negev; [email protected] Relations between ecological niches, genetic distances and geographic ranges were analyzed by pair-wise comparisons of 43 species and 38 intra- specifi c phylogenetic lineages of arvicoline voles (genera Alexandromys, Chi onomys, Lasiopodomys, Microtus). The level of niche divergence was found to be positively correlated with the level of genetic divergence and negatively correlated with the level of differences in position of geographic ranges of species and intraspecifi c forms. Frequency of different types of niche evolution (divergence, convergence, equivalence) was found to depend on genetic and geographic relations of compared forms. Among the latter with allopatric distribution, divergence was less frequent and convergence more frequent between intra-specifi c genetic lineages than between either clo sely-related or distant species. Among the forms with parapatric dis- tri bution, frequency of divergence gradually increased and frequencies of both convergence and equivalence gradually decreased from intra-specifi c genetic lineages via closely related to distant species. Among species with allopatric distribution, frequencies of niche divergence, con vergence and equivalence in closely related and distant species were si milar. The results obtained allowed suggesting that the main direction of the niche evolution was their divergence that gradually increased with ti me since population split. -
Translocating Endangered Kangaroo Rats in the San Joaquin Valley of California: Recommendations for Future Efforts
90 CALIFORNIA FISH AND GAME Vol. 99, No. 2 California Fish and Game 99(2):90-103; 2013 Translocating endangered kangaroo rats in the San Joaquin Valley of California: recommendations for future efforts ERIN N. TENNANT*, DAVID J. GERMANO, AND BRIAN L. CYPHER Department of Biology, California State University, Bakersfield, CA 93311 USA (ENT, DJG) Endangered Species Recovery Program, California State University – Stanislaus, P.O. Box 9622, Bakersfield, CA 93389 USA (BLC) Present address of ENT: Central Region Lands Unit, California Department of Fish and Wildlife, 1234 E. Shaw Ave. Fresno, CA 93710 USA *Correspondent: [email protected] Since the early 1990s, translocation has been advocated as a means of mitigating impacts to endangered kangaroo rats from development activities in the San Joaquin Valley. The factors affecting translocation are numerous and complex, and failure rates are high. Based on work we have done primarily with Tipton kangaroo rats and on published information on translocations and reintroductions, we provide recommendations for future translocations or reintroductions of kangaroo rats. If the recommended criteria we offer cannot be satisfied, we advocate that translocations not be attempted. Translocation under less than optimal conditions significantly reduces the probability of success and also raises ethical questions. Key words: Dipodomys heermanni, Dipodomys ingens, Dipodomys nitratoides, reintroduction, San Joaquin Valley, Tipton kangaroo rat, translocation ________________________________________________________________________ Largely due to habitat loss, several species or subspecies of kangaroo rats (Dipodomys spp.) endemic to the San Joaquin Valley of California have been listed by the state and federal governments as endangered. These include the giant kangaroo rat (D. ingens), and two subspecies of the San Joaquin kangaroo rat (D. -
Dipodomys Ingens)
Species Status Assessment Report for the Giant Kangaroo Rat (Dipodomys ingens) Photo by Elizabeth Bainbridge Version 1.0 August 2020 Prepared by the U.S. Fish and Wildlife Service August 2020 GKR SSA Report – August 2020 EXECUTIVE SUMMARY The U.S. Fish and Wildlife Service listed the giant kangaroo rat (Dipodomys ingens) as endangered under the Endangered Species Act in 1987 due to the threats of habitat loss and widespread rodenticide use (Service 1987, entire). The giant kangaroo rat is the largest species in the genus that contains all kangaroo rats. The giant kangaroo rat is found only in south-central California, on the western slopes of the San Joaquin Valley, the Carrizo and Elkhorn Plains, and the Cuyama Valley. The preferred habitat of the giant kangaroo rat is native, sloping annual grasslands with sparse vegetation (Grinnell, 1932; Williams, 1980). This report summarizes the results of a species status assessment (SSA) that the U. S. Fish and Wildlife Service (Service) completed for the giant kangaroo rat. To assess the species’ viability, we used the three conservation biology principles of resiliency, redundancy, and representation (together, the 3Rs). These principles rely on assessing the species at an individual, population, and species level to determine whether the species can persist into the future and avoid extinction by having multiple resilient populations distributed widely across its range. Giant kangaroo rats remain in fragmented habitat patches throughout their historical range. However, some areas where giant kangaroo rats once existed have not had documented occurrences for 30 years or more. The giant kangaroo rat is found in six geographic areas (units), representing the northern, middle, and southern portions of the range.