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Home , Akodon azarae, Black Sea field mouse, Cotton rat, Eothenomys, Holochilus chacarius, Marsh rice rat

Supplementary Table 1. Geographical distribution of hantaviruses associated with reservoirs in the Old World. Genbank acession number of complete First references to Human Reservoirs Hantavirus Known virus range sequence known hosts disease (common name) S M L Hantaviruses associated with of the family , subfamily Hantaan * agrarius HFRS China; Korea; Japan;Russia D25533 L08753 NC005222 [1] (HTNV) (Striped field mouse) Thailand * Bandicota indica ND Thailand AM397664 L08756 - [274] (THAIV) (Great bandicoot rat) Belgium; ; China; France; Ireland; Korea; Cambodia; Seoul * Rattus rattus (); HFRS Laos; Portugal; Russia; AF187082 AF18708 AF285266 [275] (SEOV) Rattus norvegicus () Singapore; Taiwan; United Kingdom; Vietnam Gou Rattus rattus ND China AF184988 AF145977 - [276] (GOUV) (Black rat ) Da Bie Shan Niviventer confucianus ND China AB027523 AB027115 DQ989237 [276] (DBSV) (Chinese white-bellied rat) Serang Rattus tanezumi ND Indonesia;China - - - [134] (SERV) (Asian house rat) Estonia; Finland; Germany; Saaremaa * Apodemus agrarius HFRS Hungary; Lithuania; Russia; AJ616854 - AJ410618 [277] (SAAV) (Striped field mouse) Slovakia; Slovenia Estonia (mainland); Germany; Kurkino Apodemus agrarius HFRS Slovakia; Russia; Hungary; - - - [278] (KURV) (Striped field mouse) Slovenia; Croatia; Sochi Apodemus ponticus HFRS Russia JF920150 JF920149 JF920148 [279] (SOCV) (Black Sea field mouse) Dobrava- Bulgaria; Croatia; Greece Apodemus flavicollis Belgrade * HFRS Hungary; Serbia and Montenegro; L41916 L33685 GU904045 [5] (Yellow-necked mouse) (DOBV) Slovakia; Slovenia Amur/ Apodemus peninsulae Soochong HFRS China; Korea; Russia AB071184 AB127994 AB620030 [280] (Korean field mouse) (ASV) Sangassou * Hylomyscus simus ND Africa JQ082303 JQ082301 JQ082302 [281] (SANGV) (African wood mouse) Tigray Stenocephalemys albipes ND Ethiopia - - - [282] (TIGV) (White-footed mouse) S2 Supplementary Table 1. Cont. Genbank acession number of complete First references to Human Reservoirs Hantavirus Known virus range sequence known hosts disease (common name) S M L Hantaviruses associated with rodents of the family , subfamily Austria; Belgium; Bosnia and Herzegovina; Bulgaria; Czech Republic; Denmark; Estonia; Puumala * HFRS (NE) Myodes glareolus Finland; France; Germany; NC_00522 NC_00522 M63194 [3] (PUUV) (Bank ) Hungary; Ireland; Lithuania; Luxembourg; The Netherlands; Norway; Poland; Romania; Russia; Slovakia; Slovenia; Sweden; Hokkaido Myodes rufocanus ND Japan AB675480 AB675451 AB712372 [283] (HOKV) (Grey-sided vole) Muju Myodes regulus ND Korea DQ138142 EF198413 - [24] (MUJV) (Royal vole) Austria; Belgium; Croatia; Czech Republic; Finland; France; Tula * arvalis - Germany; Hungary; Z49915 Z66538 NC_005226 [138] (TULV) (European ) Lithuania; The Netherlands; Poland; Russia; Serbia; Slovenia; Slovakia Topografov * Lemmus sibiricus ND Palaearctic tundra AJ01164 AJ011647 AJ011649 [284] (TOPV) (Siberian brown ) Khabarovsk Microtus maximowiczii ND China;Russia U35255 AJ011648 - [151] (KHAV) (Maximowicz’s vole) Vladivostok Microtus fortis ND China;Russia - - - [285] (VLAV) () Yuanjiang Microtus fortis ND China FJ170795 - - [286] (YUJV) (Reed vole) Luxi HFRS miletus China - - - [287] (LUXV) (Yunnan red-backed vole) Tatenale Microtus agrestis ND United Kingdom - - - [288] (TATV) (Grey-brown vole) HFRS: Haemorraghic Fever with Renal Syndrome; ND: none documented; NE: epidemic nephropathy; * Officially recognised as viral by the ICTV; – Not available in GenBank. S3 Supplementary Table 2. Geographical distribution of hantaviruses associated with rodent reservoirs in the New World. Human Reservoirs Genbank acession number of complete sequences First reference to known Hantavirus Known virus range disease (common name) S M L hosts Hantaviruses associated with rodents of the family Cricetidae, subfamily Anajatuba fornesi HPS Northern Brazil - - - [171] (ANAJV) (Fornes´ colilargo) Oligoryzomys longicaudatus Andes (ANDV) * HPS Southwestern and Chile AF324902 b AF324901 b AF291704 b [169] (Long-tailed pygmy rice rat) Alto Paraguay chacarius ND Western Paraguay DQ345762 - - [175] (ALPV) (Chacoan marsh rat) Ape Aime-Itapua montensis ND Eastern Paraguay - - - [175] (AAIV) a (Montane akodont) Araraquara lasiurus HPS Eastern Brazil EF571895b - - [200] (ARAV) (Hairy-tailed bolo mouse) palustris Bayou (BAYV) * HPS Southeastern USA GQ200820 GQ244521 GQ244526 [289] () Bermejo (BERV) ND Northwestern Argentina AF482713 - - [169] (Chacoan pygmy rice rat) Black Creek Canal Sigmodon hispidus Southern , USA; ; HPS L39949 L39950 - [290] (BCCV) * (Hispid ) brevicauda central-western Panamá; Northwestern Calabazo (CALV) ND - - - [291] (Short-tailed cane mouse) Caño Delgadito Sigmodon alstoni ND Western Venezuela DQ285566 DQ284451 GQ200821 [292] (CADV) * (Alston´s cotton rat) Castelo dos Sonhos Oligoryzomys utiaritensis HPS Central-western Brazil JX443691 - - [201] (CASV) (No comom name) Catacamas (CATV) ND Eastern Honduras DQ256126 DQ177347 FJ858378 [293] (Coues' rice rat) Central Plata HPS Southern Uruguay - - - [192] (Yellow pygmy rice rat) Choclo (CHOV) HPS Central-western Panama DQ285046 DQ285047 EF397003 [290] (Fulvous pygmy rice rat) Itapua (ITAV) ND Eastern Paraguay DQ345765 - - [175] (Black-footed pygmy rice rat) Akodon montensis Jabora (JABV) ND Southern Brazil; Eastern Paraguay JN232078 - - [177] (Montane akodont) Oligoryzomys nigripes Southern Brazil; Eastern Paraguay; Juquitiba (JUQV) HPS KC422344 FJ409556 b,c - [200] (Black-footed pygmy rice rat) Northeastern Argentina; Uruguay S4 Supplementary Table 2. Cont. Human Reservoirs Genbank acession number of complete sequences First reference to known Hantavirus Known virus range disease (common name) S M L hosts Calomys laucha Western Paraguay AF005727 AF005728 - [173] (Small ) Laguna Negra Calomys callosus HPS Bolivia; Northwestern Argentina - - - [179] (LANV) * (Large vesper mouse) Callomys callidus Midwest Brazil - - - [174] (Crafty vesper mouse) Lechiguanas Oligoryzomys flavescens HPS Central Argentina AF482714 AF028022 - [294] (LECV) (Yellow pygmy rice rat) Necromys obscurus Maciel (MACV) ND Central Argentina AF482716 - - [294] (Dark bolo mouse) Oligoryzomys delicatus Maporal (MAPV) ND Western Venezuela AY267347 AY363179 EU788002 [295] (Delicate pygmy rice rat) Muleshoe (MULV) Sigmodon hispidus ND to Southern , USA U54575 - - [296] * () Oran Oligoryzomys longicaudatus HPS Northwestern Argentina AF482715 AF028024 [169] (ORNV) (Long-tailed pygmy rice rat) Pergamino (PERV) ND Central Argentina AF482717 - - [293] (Grass field mouse) Playa de Oro Oryzomys couesi ND Colima, Western México EF534079 - - [297] (OROV) (Coues' rice rat) Rio Mamore Bolivia; Northeastern Peru; HPS U52136 FJ608550 FJ809772 [298] (RIOMV)* (Small-eared pygmy rice rat) Northwestern Brazil Rio Mearim Holochilus sciureus ND Northeastern Brazil - - - [171] (RIMEV) (Marsh rat) S5 Supplementary Table 2. Cont. Human Reservoirs Genbank acession number of complete sequences First reference to known Hantavirus Known virus range disease (common name) S M L hosts Hantaviruses associated with rodents of the family Cricetidae, subfamily Neotominae Sin Nombre (SNV) maniculatus HPS North USA; Canada; L37904 L37903 L37901 [9] * (Deer mouse) Peromyscus leucopus Blue River (BLUV) ND Central USA - AF030551 - [42] (White-footed mouse) New York (NYV) Peromyscus leucopus HPS East and central USA U09488b U36802 - [165] * (White-footed mouse) El Moro Canyon Reithrodotomys megalotis Western USA; ND U11427 U26828 - [299] (ELMCV) * (Western harvest mouse) México Rio Segundo Reithrodontomys mexicanus ND Costa Rica U18100 - - [300] (RIOSV) * (Mexican harvest mouse) Limestone canyon Peromyscus boylii ND Southwestern USA - - - [181] (LSCV) (Brush mouse) Monongahela Peromyscus maniculatus HPS Eastern USA; Canada U32591 - - [166] (MGLV) (Deer Mouse) Peromyscus beatae Montano (MTNV) ND México AB620100 AB620101 AB620102 [167] (Orizaba deer mouse) Reithrodontomys sumichrasti Carrizal (CARV) ND México AB620103 AB620104 AB620105 [167] (Sumichrast´s harvest mouse) Reithrodontomys megalotis Huitzilac (HUIV) ND México AB620106 AB620107 AB620108 [167] (Western harvest mouse) Hantaviruses associated with rodents of the family Cricetidae, subfamily Arvicolinae Prospect Hill Microtus pennsylvanicus ND USA; Canada U47136 X55129 EF646763 [6] (PHV) () Bloodland Lake Microtus ochrogaster ND USA U19303 - - [301] (BLLV) () Microtus californicus Isla Vista (ISLAV) ND USA IVU31534 - - [302] () HPS: Hantavirus Pulmonary Syndrome; ND: none documented; * Officially recognised as viral species by the ICTV; – Not available in GenBank; a The AAIV genotype was a reassortment of the S-segment of the JABV-like viral genotypes and the M-segment of the AND-like viral genotypes [186]. b Sequence from human case. c Sequence of Araucaria virus, a variant of JUQV. ** Oligoryzomys longicaudatus distribution does not include the Northwestern Argentina where the hantavirus Oran was identified in Oligoryzomys specimens. Oligoryzomys brendae is the only large-sized species of Oligoryzomys inhabiting the northwestern Argentina [303], and, probably, this species is the reservoir of hantavirus Oran according to this new taxonomic arrangement or O. chacoensis as recently described by Rivera and colleagues [188].

S6 Supplementary Table 3. Geographical distribution of hantaviruses associated with insectivorous reservoirs and chiropterans in the Old and New World. Reservoirs Genbank acession number of complete sequences First references to Hantavirus Known virus range (common name) S M L known hosts Hantaviruses associated with shrews and moles of the families Soricidae and Talpidae Suncus murinus Thottapalayam (TPMV) * India; China; Nephal AY526097 DQ825771 DQ825770 [20] (Asian house shrew) Crocidura lasiura Imjin (MJNV) (Ussuri white-toothed South Korea EF641804 EF641797 EF641806 [221] Shrew) Talpa europaea South-western Hungary; Nova (NVAV) FJ539168 - FJ593498 [212] (European common mole) France Urotrichus talpoides Asama (ASAV) Japan EU929070 EU929073 EU929076 [26] (Japanese shrew mole) European Russia; Siberia; Belgium; Yugoslavia; Sorex araneus Seewis (SWSV) Hungary; Finland Austria; EF636024 - - [23] (Eurasian common shrew) Czech Republic; Slovakia; Germany Neurotrichus gibbsii Oxbow (OXBV) Oregon, USA FJ539166 FJ539167 - [27] (American shrew mole) Anourosorex squamipes Cao Bang (CBNV) Vietnam EF543524 EF543526 EF543525 [24] (Chinese shrew mole) Blarina brevicauda Camp Ripley (RPLV) Minnesota, USA - - - [25] (Short-tailed shrew) Crocidura theresae Tanganya (TGNV) Guinea - - - [22] (Therese's shrew) Sorex monticolus New Mexico; Colorado, Jemez Springs (JMSV) FJ686859 - - [222] (dusky shrew) USA Sorex cinereus Ash River (ARRV) Minnesota, USA - - - [222] (masked shrew) Sorex roboratus Sakha Republic in Eastern Kenkeme (KKMV) GQ306148 - - [28] (flat-skulled shrew) Siberia Scalopus aquaticus Rockport (RKPV) Texas, USA HM015218 HM015219 HM015220 [29] (Eastern mole) Sorex minutus Czech Republic; Germany; Asikkala (ASIV) KC880342 KC880345 - [304] (Eurasian pygmy shrew) Filand Crocidura obscurior Azagny (AZGV) (West African pygmy Coast of Côte d’Ivoire - - - [305] shrew) S7 Supplementary Table 3. Cont. Reservoirs Genbank acession number of complete sequences First references to Hantavirus Known virus range (common name) S M L known hosts Neomys fodiens Laihia (LAIV) Finland - - - [81] (water shrew) Crocidura shantungensis Jeju Island Southern coast of Jeju (JEJV) HQ834695 HQ834696 HQ834697 [225] (Asian lesser white-toothed shrews) Korea Neomys fodiens Boginia (BOGV) Central Poland - - - [306] (Eurasian water shrew) Sorex isodon Yakeshi (YKSV) Eastern China JX465423 JX465403 - [226] (Taiga shrew) Anourosorex squamipes Lianghe (LHEV) Southwest China JX465406 JX465390 - [226] (Chinese mole shrew) Crocidura douceti Bowé (BOWV) Southwestern Guinea KC631782 KC631783 KC631784 [306] (Doucet’s musk shrew) Hantaviruses associated with bats of the families Vespertilionidae, Nycteridae and Rhinolophidae Neoromicia nanus Southeastern Mouyassue (MOUV) - - - [30] (banana pipistrelles) region of Côte d’Ivoire Nycteris hispida Sierra Magboi (MGBV) - - - [31] (hairy slit-faced) Leone, África Hipposideros pomona Xuan Son (XSV) Vietnam - - - [227] (Pomona roundleaf) Pipistrellus abramus Huangpi ( HUPV) (japonese house or japonese China JX473273 - - [226] pipistrelle) Rhinolophus affinis (Intermediate Horseshoe) Rhinolophus sinicus Longquan (LQUV) China JX465413 JX465398 - [226] (Chinese Rufous Horseshoe) Rhinolophus monoceros (Formosan Lesser Horseshoe) * Officially recognised as viral species by the ICTV; – Not available in GenBank.