Influence of Fixation of the Blackfly Simulium Vittatum On
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Examining New Phylogenetic Markers to Uncover The
Persoonia 30, 2013: 106–125 www.ingentaconnect.com/content/nhn/pimj RESEARCH ARTICLE http://dx.doi.org/10.3767/003158513X666394 Examining new phylogenetic markers to uncover the evolutionary history of early-diverging fungi: comparing MCM7, TSR1 and rRNA genes for single- and multi-gene analyses of the Kickxellomycotina E.D. Tretter1, E.M. Johnson1, Y. Wang1, P. Kandel1, M.M. White1 Key words Abstract The recently recognised protein-coding genes MCM7 and TSR1 have shown significant promise for phylo genetic resolution within the Ascomycota and Basidiomycota, but have remained unexamined within other DNA replication licensing factor fungal groups (except for Mucorales). We designed and tested primers to amplify these genes across early-diverging Harpellales fungal clades, with emphasis on the Kickxellomycotina, zygomycetous fungi with characteristic flared septal walls Kickxellomycotina forming pores with lenticular plugs. Phylogenetic tree resolution and congruence with MCM7 and TSR1 were com- MCM7 pared against those inferred with nuclear small (SSU) and large subunit (LSU) rRNA genes. We also combined MS277 MCM7 and TSR1 data with the rDNA data to create 3- and 4-gene trees of the Kickxellomycotina that help to resolve MS456 evolutionary relationships among and within the core clades of this subphylum. Phylogenetic inference suggests ribosomal biogenesis protein that Barbatospora, Orphella, Ramicandelaber and Spiromyces may represent unique lineages. It is suggested that Trichomycetes these markers may be more broadly useful for phylogenetic studies among other groups of early-diverging fungi. TSR1 Zygomycota Article info Received: 27 June 2012; Accepted: 2 January 2013; Published: 20 March 2013. INTRODUCTION of Blastocladiomycota and Kickxellomycotina, as well as four species of Mucoromycotina have their genomes available The molecular revolution has transformed our understanding of (based on available online searches and the list at http://www. -
S41467-021-25308-W.Pdf
ARTICLE https://doi.org/10.1038/s41467-021-25308-w OPEN Phylogenomics of a new fungal phylum reveals multiple waves of reductive evolution across Holomycota ✉ ✉ Luis Javier Galindo 1 , Purificación López-García 1, Guifré Torruella1, Sergey Karpov2,3 & David Moreira 1 Compared to multicellular fungi and unicellular yeasts, unicellular fungi with free-living fla- gellated stages (zoospores) remain poorly known and their phylogenetic position is often 1234567890():,; unresolved. Recently, rRNA gene phylogenetic analyses of two atypical parasitic fungi with amoeboid zoospores and long kinetosomes, the sanchytrids Amoeboradix gromovi and San- chytrium tribonematis, showed that they formed a monophyletic group without close affinity with known fungal clades. Here, we sequence single-cell genomes for both species to assess their phylogenetic position and evolution. Phylogenomic analyses using different protein datasets and a comprehensive taxon sampling result in an almost fully-resolved fungal tree, with Chytridiomycota as sister to all other fungi, and sanchytrids forming a well-supported, fast-evolving clade sister to Blastocladiomycota. Comparative genomic analyses across fungi and their allies (Holomycota) reveal an atypically reduced metabolic repertoire for sanchy- trids. We infer three main independent flagellum losses from the distribution of over 60 flagellum-specific proteins across Holomycota. Based on sanchytrids’ phylogenetic position and unique traits, we propose the designation of a novel phylum, Sanchytriomycota. In addition, our results indicate that most of the hyphal morphogenesis gene repertoire of multicellular fungi had already evolved in early holomycotan lineages. 1 Ecologie Systématique Evolution, CNRS, Université Paris-Saclay, AgroParisTech, Orsay, France. 2 Zoological Institute, Russian Academy of Sciences, St. ✉ Petersburg, Russia. 3 St. -
Trichomycetes from Lentic and Lotic Aquatic Habitats in Ontario, Canada
1449 Trichomycetes from lentic and lotic aquatic habitats in Ontario, Canada D.B. Strongman and Merlin M. White Abstract: Fungi and protists make up an ecological group, trichomycetes, that inhabit the guts of invertebrates, mostly aquatic insects. Trichomycetes are reported herein from arthropods collected in lotic habitats (fast flowing streams) and lentic environments (ponds, ditches, seeps, and lakes) from 11 sites in Algonquin Park and 6 other sites in Ontario, Can- ada. Thirty-two trichomycete species were recovered, including 7 new species: Legeriomyces algonquinensis, Legeriosi- milis leptocerci, Legeriosimilis whitneyi, and Paramoebidium umbonatum are described from mayfly nymphs (Ephemeroptera); Pennella digitata and Glotzia incilis from black fly and midge larvae (Diptera), respectively; and Arun- dinula opeongoensis from a crayfish (Crustacea). Legeriomyces rarus Lichtw. & M.C. Williams and Stachylina penetralis Lichtw. are new North American records, and seven species are documented for the first time in Canada. More common and widely distributed trichomycete species such as Harpella melusinae Le´ger & Duboscq and Smittium culicis Manier, were also recovered. Most previous studies on trichomycetes have been done primarily in lotic environments but clearly lentic systems (e.g., ponds and lakes) harbour diverse arthropod communities and further exploration of these habitats will continue to increase our knowledge of trichomycete diversity. Key words: Amoebidiales, Eccrinales, Harpellales, insect fungal endobionts, symbiotic protista. Re´sume´ : Les champignons et les protistes comportent un groupe e´cologique, les trichomyce`tes, qui habitent les intestins de la plupart des insectes aquatiques. Les auteurs rapportent des ttrichomyce`tes provenant d’arthropodes vivants dans des habitats lotiques (cours d’eau rapides) et des environnements lentiques (e´tangs, fosse´s, suintement et lacs) re´colte´s sur 11 sites dans le parc Algonquin et six autres sites en Ontario, au Canada. -
Tectimyces, a New Genus of Harpellales on Mayfly Nymphs (Leptophlebiidae) in Spain
Mycol. Res. 106 (7): 841–847 (July 2002). # The British Mycological Society 841 DOI: 10.1017\S0953756202006196 Printed in the United Kingdom. Tectimyces, a new genus of Harpellales on mayfly nymphs (Leptophlebiidae) in Spain Laia G. VALLE and Sergi SANTAMARIA* Unitat de BotaZ nica, Departament de Biologia Animal, de Biologia Vegetal i d’Ecologia, Facultat de CieZ ncies, Universitat AutoZ noma de Barcelona, 08193-Bellaterra (Barcelona), Spain. E-mail: sergi.santamaria!uab.es Received 2 March 2002; accepted 13 June 2002. The genus Tectimyces gen. nov. (Harpellales: Legeriomycetaceae) is described with two species, T. leptophlebiidarum and T. robustus spp. nov., collected on the hindgut of the mayfly nymph Habroleptoides confusa (Ephemeroptera: Leptophlebiidae) in northern Spain. This is the second report of a trichomycete inhabiting a member of this family of ephemerids. Diagnostic for the new genus are type II zygospores and unappendaged trichospores, borne on long generative cells and carrying a very short collar after release. The position and morphological traits of the newly described taxa are discussed and compared with other genera and species, such as Bojamyces repens and Orphella spp. INTRODUCTION Ephemeropteran nymphs of the family Leptophlebi- idae are common in streams with pebble gravel, sand, Two new species in a new genus of Trichomycetes and bank vegetation, mostly fallen leaves from the (Zygomycota) are reported and described from deciduous riparian forest. This organic debris is the Catalonia (Spain). These fungi have the characteristic basic nourishment of the nymphs and is consumed features of the Legeriomycetaceae (Harpellales) which together with the accompanying saprophytic fungi includes species with branched thalli producing tricho- which decompose it. -
Assessing the Potential Effects of Fungicides on Nontarget Gut Fungi (Trichomycetes) and Their Associated Larval Black Fly Hosts1
JOURNAL OF THE AMERICAN WATER RESOURCES ASSOCIATION Vol. 50, No. 2 AMERICAN WATER RESOURCES ASSOCIATION April 2014 ASSESSING THE POTENTIAL EFFECTS OF FUNGICIDES ON NONTARGET GUT FUNGI (TRICHOMYCETES) AND THEIR ASSOCIATED LARVAL BLACK FLY HOSTS1 Emma R. Wilson, Kelly L. Smalling, Timothy J. Reilly, Elmer Gray, Laura Bond, Lance Steele, Prasanna Kandel, Alison Chamberlin, Justin Gause, Nicole Reynolds, Ian Robertson, Stephen Novak, Kevin Feris, and Merlin M. White2 ABSTRACT: Fungicides are moderately hydrophobic and have been detected in water and sediment, particularly in agricultural watersheds, but typically are not included in routine water quality monitoring efforts. This is despite their widespread use and frequent application to combat fungal pathogens. Although the efficacy of these compounds on fungal pathogens is well documented, little is known about their effects on nontarget fungi. This pilot study, a field survey in southwestern Idaho from April to December 2010 on four streams with varying pesti- cide inputs (two agricultural and two reference sites), was conducted to assess nontarget impact of fungicides on gut fungi, or trichomycetes. Tissues of larval black flies (Diptera: Simuliidae), hosts of gut fungi, were analyzed for pesticide accumulation. Fungicides were detected in hosts from streams within agricultural watersheds but were not detected in hosts from reference streams. Gut fungi from agricultural sites exhibited decreased percent infes- tation, density and sporulation within the gut, and black fly tissues had elevated pesticide concentrations. Differ- ences observed between the sites demonstrate a potential effect on this symbiotic system. Future research is needed to parse out the details of the complex biotic and abiotic relationships; however, these preliminary results indicate that impacts to nontarget organisms could have far-reaching consequences within aquatic ecosystems. -
Trichomycete Fungi (Zygomycota) Associated with Mosquito Larvae (Diptera: Culicidae) in Natural and Artificial Habitats in Manaus, AM Brazil
March - April 2005 325 PUBLIC HEALTH Trichomycete Fungi (Zygomycota) Associated with Mosquito Larvae (Diptera: Culicidae) in Natural and Artificial Habitats in Manaus, AM Brazil ELENY DA S. PEREIRA1, RUTH L.M. FERREIRA1, NEUSA HAMADA1 AND ROBERT W. L ICHTWARDT2 1Instituto Nacional de Pesquisas da Amazônia, Coordenação de Pesquisas em Entomologia, C. postal 478, 69011-970 Manaus, AM, Brazil, [email protected], [email protected], [email protected] 2Dept Ecology & Evolutionary Biology, University of Kansas, Lawrence, KS, USA Neotropical Entomology 34(2):325-329 (2005) Fungos Trichomycetes (Zygomicota) Associados com Larvas de Mosquitos (Diptera: Culicidae) em Criadouros Naturais e Artificiais em Manaus, AM RESUMO - Espécies de fungos da classe Trichomycete (Zygomycota) estão associados com o trato digestivo dos Arthropoda. A relação entre esses fungos e seus hospedeiros ainda é pouco conhecida, podendo ser comensal, benéfica ou deletéria. Conhecimentos da estrutura de comunidades parasitas/ patógenos e os habitats de larvas de Culicidae podem ser importantes em estudos que utilizam medidas combinadas para o controle populacional. Larvas de Culicidae e os fungos Trichomycetes associados foram coletados no município de Manaus, AM; amostras de criadouros incluindo plantas (habitat natural) e reservatórios antrópicos (habitat artificial). O total de 1518 larvas foi coletado, 913 em criadouros naturais e 605 em criadouros artificiais, distribuídas em 12 espécies de sete gêneros. O total de 661 indivíduos (4o estádio) foi dissecado para verificar a presença de fungos Trichomycetes no intestino médio e posterior. Infecção de fungos Trichomycetes no intestino posterior foram observados em 15% de Culex urichii Coquillett, 13% de Culex (Culex) sp1, 9% of Limatus spp., 49% de Aedes aegypti Linnaeus e 1% de Ochlerotatus argyrothorax Bonne-Wepster & Bonne. -
Lichtwardt 2001.Pdf (12.31Mb)
Mycologia, 93(1), 2001, pp. 66-81. © 2001 by The Mycological Society of America, Lawrence, KS 66044-8897 Molecular variation within and among species of Harpellales Alexandra M. Gottlieb wall structure, and both orders produce basipetal Robert W. Lichtwardt1 monosporous sporangia (Moss and Young 1978). In Department of Ecology and Evolutionary Biology, particular, a bifurcate type of septum has been re University of Kansas, Lawrence, Kansas 66045-2106 ported in Harpellales (Farr and Lichtwardt 1967), Asellariales (Manier 1973, Saikawa et al 1997, Moss 1975), Kickxellales (Young 1969), Dimargaritales Abstract: Intra- and interspecific variation of the nu (Saikawa 1977, Jeffries and Young 1979) and Mersi- clear ribosomal internal transcribed spacers (ITS) of taciaceae (Entomophthorales) (Saikawa 1989). How 77 Smittium isolates and related genera was studied ever, Porter and Smiley (1979) concluded that the using RFLP. Due to the sequence and length varia Harpellales, Kickxellales and Mucorales were not tion encountered, the ITS is unsuitable for compar closely related based on disparate RNA molecular ison at the species level within Smittium, as presently weights. Walker's (1984) 5S rRNA sequence compar delimited. Intra- and interspecific variation of 18S ison indicated that Harpellales were more related to rDNA was also analyzed. Cladistic analysis of 32 new Mucorales than to Kickxellales, but the differences 18S rDNA sequences resolved at least five lineages were too small to be convincing. Recently, O'Donnell and suggests that Smittium is not monophyletic. In et al (1998) showed certain phylogenetic relatedness addition, 17 18S rDNA sequences from 5 orders of in the sequences of the 18S ribosomal DNA of some Zygomycota were included to assess phylogenetic re Kickxellales and four representatives of the Harpel lationships with the Trichomycetes. -
High-Level Classification of the Fungi and a Tool for Evolutionary Ecological Analyses
Fungal Diversity (2018) 90:135–159 https://doi.org/10.1007/s13225-018-0401-0 (0123456789().,-volV)(0123456789().,-volV) High-level classification of the Fungi and a tool for evolutionary ecological analyses 1,2,3 4 1,2 3,5 Leho Tedersoo • Santiago Sa´nchez-Ramı´rez • Urmas Ko˜ ljalg • Mohammad Bahram • 6 6,7 8 5 1 Markus Do¨ ring • Dmitry Schigel • Tom May • Martin Ryberg • Kessy Abarenkov Received: 22 February 2018 / Accepted: 1 May 2018 / Published online: 16 May 2018 Ó The Author(s) 2018 Abstract High-throughput sequencing studies generate vast amounts of taxonomic data. Evolutionary ecological hypotheses of the recovered taxa and Species Hypotheses are difficult to test due to problems with alignments and the lack of a phylogenetic backbone. We propose an updated phylum- and class-level fungal classification accounting for monophyly and divergence time so that the main taxonomic ranks are more informative. Based on phylogenies and divergence time estimates, we adopt phylum rank to Aphelidiomycota, Basidiobolomycota, Calcarisporiellomycota, Glomeromycota, Entomoph- thoromycota, Entorrhizomycota, Kickxellomycota, Monoblepharomycota, Mortierellomycota and Olpidiomycota. We accept nine subkingdoms to accommodate these 18 phyla. We consider the kingdom Nucleariae (phyla Nuclearida and Fonticulida) as a sister group to the Fungi. We also introduce a perl script and a newick-formatted classification backbone for assigning Species Hypotheses into a hierarchical taxonomic framework, using this or any other classification system. We provide an example -
Trichomycetes from China and the Description of Three New Smittium Species
Mycologia, 98(3), 2006, pp. 479–487. # 2006 by The Mycological Society of America, Lawrence, KS 66044-8897 Trichomycetes from China and the description of three new Smittium species D.B. Strongman1 yield many undescribed species and may help better Department of Biology, Saint Mary’s University, elucidate the ecology and biogeography of this fungal Halifax, Nova Scotia, B3H 3C3 Canada group. Shengquan Xu Trichomycetes are poorly known from Asia. One College of Life Science, Shaanxi Normal University, publication reported species recovered in Japan Xi’an, PR China (Lichtwardt et al 1987) and another describing parasites of blackflies from China noted the presence of a Trichomycete, Harpella melusinae Leger & Abstract: Trichomycetes were recovered from the Dubosq, in these hosts (Adler et al 1996). Chien guts of aquatic insect larvae collected from a stream in and Hsieh (2001) reported Trichomycetes in the the Qinling Mountains in western China. These orders Eccrinales and Asellariales from aquatic and collections included Smittium hecatei, known only terrestrial crustaceans as well as millipedes in Taiwan, from Spain, as well as Smittium simulii and Stachylina including two new species of eccrinids from crusta- penetralis, which appear to be more widely distribut- cean hosts. ed. Caudomyces japonicus, previously recorded only This paper reports Trichomycetes from aquatic from Japan, also is reported from crane fly larvae insects collected in the Niu Bei Liang nature pro- (Antocha sp.) from China. We describe three new tection area, Qinling Mountains approximately 40 km species, Smittium chinliense from a tipulid host, as well from Xi’an, in western China. We describe three new as Smittium naiadis and Smittium nodifixum, both species of Trichomycetes in the genus Smittium from from chironomid larvae. -
1 Invasive Species and Biological Control
Bio Control 01 - 16 made-up 14/11/01 3:16 pm Page 1 Chapter 1 1 1 Invasive Species and Biological Control D.J. Parker and B.D. Gill Introduction ballast, favouring aquatic invaders (Bright, 1999). While the rate of introductions has Invasive alien species are those organisms increased greatly over the past 100 years that, when accidentally or intentionally (Sailer, 1983), the period 1981–2000 has introduced into a new region or continent, seen political and technological changes rapidly expand their ranges and exert a that may unleash an even greater wave of noticeable impact upon the resident flora invasive species. The collapse of the for- or fauna of their new environment. From a mer Soviet Union and China’s interest in plant quarantine perspective, invasive joining world trade have opened up new species are typically pests that cause prob- markets in Asia. These vast areas, once iso- lems after entering a country undetected in lated, can now serve as source populations commercial goods or in the personal bag- for additional cold-tolerant pests, e.g. the gage of travellers. Under the International Asian longhorned beetle, Anoplophora Plant Protection Convention (IPPC), ‘pests’ glabripennis (Motschulsky), and the lesser are defined as ‘any species, strain or bio- Japanese tsugi borer, Callidiellum type of plant, animal or pathogenic agent rufipenne (Motschulsky). Examples of a injurious to plants or plant products’, few insects introduced to Canada since while ‘quarantine pests’ are ‘pests of eco- 1981 include apple ermine moth, nomic importance to the area endangered Yponomeuta malinellus Zeller, European thereby and not yet present there, or pre- pine shoot beetle, Tomicus piniperda (L.), sent but not widely distributed and being leek moth, Acrolepiopsis assectella officially controlled’ (FAO, 1999). -
Asellariales (Trichomycetes) from the Iberian Peninsula
Asellariales (Trichomycetes) from the Iberian Peninsula Laia G. Valle* Unitat de Botànica. Dept. Biol. Animal, Biol. Vegetal i Ecologia. Facultat de Ciències. Universitat Autònoma de Barcelona (UAB). 08193-Bellaterra (Barcelona), Spain Valle, L.G. (2006). Asellariales (Trichomycetes) from the Iberian Peninsula. Fungal Diversity 21: 167-179. A new species of Asellariales, Asellaria saezii, is described from an Iberian locality, found in the hindgut of a terrestrial isopod, Trichoniscus pusillus. The morphological characters of its distinctive basal cell, as well as thallus features, characterise this species. Also, three previously described species of Asellariales, new for the Iberian Peninsula, are reported here: A. gramenei, A. ligiae (both found in Isopoda), and Orchesellaria mauguioi (found in a Collembola). This represents the first report of Asellariales species in the Iberian Peninsula and Balearic Islands. Morphological similarities between these and other Asellariales are discussed. Drawings and photographs are provided to illustrate these taxa, together with comments on their habitats. Key words: gut fungi, Isopoda, taxonomy, Zygomycota Introduction The Asellariales is probably the Order least studied of trichomycetes (as an ecological group): the number of described species is as few as 12, including the new one documented here. The Asellariales include one single Family, Asellariaceae, and three genera: Asellaria Poisson (1932), Orchesellaria Manier ex Manier & Lichtw. (1969) and Baltomyces Cafaro, which is provisionally placed within this order though it may deserve a special classification within the Trichomycetes (Cafaro, 1999). All three genera include filamentous endosymbiotic species that reproduce asexually by arthrospore-like cells, which disarticulate from their corresponding thallus. Both Asellariales and Legeriomycetaceae (Harpellales) are branched, and both were initially placed together within the Harpellales by Manier (1950) until she reclassified the Trichomycetes some years later (Manier, 1955). -
The Entomopathogenic Fungusmetarhizium Anisopliae For
VWJS 1'J Ernst-Jan Scholte The entomopathogenic fungus Metarhiziumanisopliae for mosquito control Impact on the adult stage of the African malaria vector Anopheles gambiae and filariasis vector Culex quinquefasciatus Proefschrift terverkrijgin g vand egraa dva ndocto r opgeza gva n derecto r magnificus vanWageninge n Universiteit, Prof.Dr .Ir .L .Speelma n inhe topenbaa rt e verdedigen opdinsda g 30novembe r200 4 desnamiddag st ehal ftwe ei nd eAul a Scholte,Ernst-Ja n(2004 ) Theentomopathogeni cfungu sMetarhizium anisopliaefo r mosquitocontro l Impact onth e adult stage ofth eAfrica n malaria vectorAnopheles gambiae and filariasis vector Culex quinquefasciatus Thesis Wageningen University -withreferences - with summary inDutc h ISBN:90-8504-118- X fs/l0x£u Stellingen 1. Ondanks aanvankelijke scepsis kan deinsect-pathogen e schimmel Metarhizium anisopliaeworde n ingezet bij bestrijding van malaria muggen (dit proefschrift). 2. De ontdekking vanBacillus thuringiensis israelensis in 1976heef t het onderzoek naar, en ontwikkeling van, entomopathogeneschimmel s voorbestrijdin g van muggen sterk afgeremd (ditproefschrift) . 3. Biologische bestrijding van plagen isveilige r voor devolksgezondhei d dan chemische bestrijding (FrancisG . Howarthi nAnn. Rev. Entomol. 1991, 36: 485-509). 4. In etymologische zin kunnen muggen ook worden opgevat als amfibieen. 5. Het feit dat sommigeAfrikane n zich grappend afvragen of blanken welbene n hebben geeft aan dat de meesteblanke n zich tijdens eenbezoe k aan Afrika teweini g uithu n autobegeve n omzic honde r deplaatselijk e bevolking temengen . 6. Het isbiza r dat het land met het grootste wapenarsenaal, een land dat in de afgelopen 100jaa r bij 15oorloge n betrokken is geweest zonder dathe t land zelf ooitwer d binnengevallen, zich opwerpt alsbeschermenge l van dewereldvred e en democratie.