First Report of Basidiolum Fimbriatum Since 1861
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Key to Phycomycetes Predaceous Or Parasitic in Nematodes Or Amoebae I
©Verlag Ferdinand Berger & Söhne Ges.m.b.H., Horn, Austria, download unter www.biologiezentrum.at Key to Phycomycetes predaceous or parasitic in Nematodes or Amoebae I. Zoopagales By R. Dayal Department of Plant Pathology, Faculty of Agriculture, Banaras Hindu University, Varanasi 210005 Summary A key to 10 recognised genera and 92 species of predaceous or parasi- tic fungi in nematodes or amoebae, belonging to the order Zoopagales, is given here. The key is intended primarily for those working in predaceous fungi. It is not phylogenetic but rather an arrangement for easy identification. No claim is made that these are all valid species; it will become evident as the key is used that further study must be made into some which are with difficulty separated from others, except by their host. The literature con- cerning these fungi has increased to such an extent that workers studying the group have for some time felt the need for a convenient aid to identi- fication. This can be overcome only by furnishing with as many tools as possible for identification or recognition of genera and species. This paper is intended as one of the tools. It is a collection of 10 recognized genera and 92 species, brought together so that this information may be more ea- sily available. Guide to the Key The measurements given in the key are those most frequently met within nematode infested cultures; in pure cultures traps are usally ab- sent. Conidial dimensions are usually smaller and the morphology of the conidiophore may also alter considerably. Chlamydospores are formed more frequently in older cultures, but not in all the species. -
Fungal Evolution: Major Ecological Adaptations and Evolutionary Transitions
Biol. Rev. (2019), pp. 000–000. 1 doi: 10.1111/brv.12510 Fungal evolution: major ecological adaptations and evolutionary transitions Miguel A. Naranjo-Ortiz1 and Toni Gabaldon´ 1,2,3∗ 1Department of Genomics and Bioinformatics, Centre for Genomic Regulation (CRG), The Barcelona Institute of Science and Technology, Dr. Aiguader 88, Barcelona 08003, Spain 2 Department of Experimental and Health Sciences, Universitat Pompeu Fabra (UPF), 08003 Barcelona, Spain 3ICREA, Pg. Lluís Companys 23, 08010 Barcelona, Spain ABSTRACT Fungi are a highly diverse group of heterotrophic eukaryotes characterized by the absence of phagotrophy and the presence of a chitinous cell wall. While unicellular fungi are far from rare, part of the evolutionary success of the group resides in their ability to grow indefinitely as a cylindrical multinucleated cell (hypha). Armed with these morphological traits and with an extremely high metabolical diversity, fungi have conquered numerous ecological niches and have shaped a whole world of interactions with other living organisms. Herein we survey the main evolutionary and ecological processes that have guided fungal diversity. We will first review the ecology and evolution of the zoosporic lineages and the process of terrestrialization, as one of the major evolutionary transitions in this kingdom. Several plausible scenarios have been proposed for fungal terrestralization and we here propose a new scenario, which considers icy environments as a transitory niche between water and emerged land. We then focus on exploring the main ecological relationships of Fungi with other organisms (other fungi, protozoans, animals and plants), as well as the origin of adaptations to certain specialized ecological niches within the group (lichens, black fungi and yeasts). -
Multigene Eukaryote Phylogeny Reveals the Likely Protozoan Ancestors of Opis- Thokonts (Animals, Fungi, Choanozoans) and Amoebozoa
Accepted Manuscript Multigene eukaryote phylogeny reveals the likely protozoan ancestors of opis- thokonts (animals, fungi, choanozoans) and Amoebozoa Thomas Cavalier-Smith, Ema E. Chao, Elizabeth A. Snell, Cédric Berney, Anna Maria Fiore-Donno, Rhodri Lewis PII: S1055-7903(14)00279-6 DOI: http://dx.doi.org/10.1016/j.ympev.2014.08.012 Reference: YMPEV 4996 To appear in: Molecular Phylogenetics and Evolution Received Date: 24 January 2014 Revised Date: 2 August 2014 Accepted Date: 11 August 2014 Please cite this article as: Cavalier-Smith, T., Chao, E.E., Snell, E.A., Berney, C., Fiore-Donno, A.M., Lewis, R., Multigene eukaryote phylogeny reveals the likely protozoan ancestors of opisthokonts (animals, fungi, choanozoans) and Amoebozoa, Molecular Phylogenetics and Evolution (2014), doi: http://dx.doi.org/10.1016/ j.ympev.2014.08.012 This is a PDF file of an unedited manuscript that has been accepted for publication. As a service to our customers we are providing this early version of the manuscript. The manuscript will undergo copyediting, typesetting, and review of the resulting proof before it is published in its final form. Please note that during the production process errors may be discovered which could affect the content, and all legal disclaimers that apply to the journal pertain. 1 1 Multigene eukaryote phylogeny reveals the likely protozoan ancestors of opisthokonts 2 (animals, fungi, choanozoans) and Amoebozoa 3 4 Thomas Cavalier-Smith1, Ema E. Chao1, Elizabeth A. Snell1, Cédric Berney1,2, Anna Maria 5 Fiore-Donno1,3, and Rhodri Lewis1 6 7 1Department of Zoology, University of Oxford, South Parks Road, Oxford OX1 3PS, UK. -
Metabolites from Nematophagous Fungi and Nematicidal Natural Products from Fungi As an Alternative for Biological Control
Appl Microbiol Biotechnol (2016) 100:3799–3812 DOI 10.1007/s00253-015-7233-6 MINI-REVIEW Metabolites from nematophagous fungi and nematicidal natural products from fungi as an alternative for biological control. Part I: metabolites from nematophagous ascomycetes Thomas Degenkolb1 & Andreas Vilcinskas1,2 Received: 4 October 2015 /Revised: 29 November 2015 /Accepted: 2 December 2015 /Published online: 29 December 2015 # The Author(s) 2015. This article is published with open access at Springerlink.com Abstract Plant-parasitic nematodes are estimated to cause Keywords Phytoparasitic nematodes . Nematicides . global annual losses of more than US$ 100 billion. The num- Oligosporon-type antibiotics . Nematophagous fungi . ber of registered nematicides has declined substantially over Secondary metabolites . Biocontrol the last 25 years due to concerns about their non-specific mechanisms of action and hence their potential toxicity and likelihood to cause environmental damage. Environmentally Introduction beneficial and inexpensive alternatives to chemicals, which do not affect vertebrates, crops, and other non-target organisms, Nematodes as economically important crop pests are therefore urgently required. Nematophagous fungi are nat- ural antagonists of nematode parasites, and these offer an eco- Among more than 26,000 known species of nematodes, 8000 physiological source of novel biocontrol strategies. In this first are parasites of vertebrates (Hugot et al. 2001), whereas 4100 section of a two-part review article, we discuss 83 nematicidal are parasites of plants, mostly soil-borne root pathogens and non-nematicidal primary and secondary metabolites (Nicol et al. 2011). Approximately 100 species in this latter found in nematophagous ascomycetes. Some of these sub- group are considered economically important phytoparasites stances exhibit nematicidal activities, namely oligosporon, of crops. -
Examining New Phylogenetic Markers to Uncover The
Persoonia 30, 2013: 106–125 www.ingentaconnect.com/content/nhn/pimj RESEARCH ARTICLE http://dx.doi.org/10.3767/003158513X666394 Examining new phylogenetic markers to uncover the evolutionary history of early-diverging fungi: comparing MCM7, TSR1 and rRNA genes for single- and multi-gene analyses of the Kickxellomycotina E.D. Tretter1, E.M. Johnson1, Y. Wang1, P. Kandel1, M.M. White1 Key words Abstract The recently recognised protein-coding genes MCM7 and TSR1 have shown significant promise for phylo genetic resolution within the Ascomycota and Basidiomycota, but have remained unexamined within other DNA replication licensing factor fungal groups (except for Mucorales). We designed and tested primers to amplify these genes across early-diverging Harpellales fungal clades, with emphasis on the Kickxellomycotina, zygomycetous fungi with characteristic flared septal walls Kickxellomycotina forming pores with lenticular plugs. Phylogenetic tree resolution and congruence with MCM7 and TSR1 were com- MCM7 pared against those inferred with nuclear small (SSU) and large subunit (LSU) rRNA genes. We also combined MS277 MCM7 and TSR1 data with the rDNA data to create 3- and 4-gene trees of the Kickxellomycotina that help to resolve MS456 evolutionary relationships among and within the core clades of this subphylum. Phylogenetic inference suggests ribosomal biogenesis protein that Barbatospora, Orphella, Ramicandelaber and Spiromyces may represent unique lineages. It is suggested that Trichomycetes these markers may be more broadly useful for phylogenetic studies among other groups of early-diverging fungi. TSR1 Zygomycota Article info Received: 27 June 2012; Accepted: 2 January 2013; Published: 20 March 2013. INTRODUCTION of Blastocladiomycota and Kickxellomycotina, as well as four species of Mucoromycotina have their genomes available The molecular revolution has transformed our understanding of (based on available online searches and the list at http://www. -
The Revised Classification of Eukaryotes
See discussions, stats, and author profiles for this publication at: https://www.researchgate.net/publication/231610049 The Revised Classification of Eukaryotes Article in Journal of Eukaryotic Microbiology · September 2012 DOI: 10.1111/j.1550-7408.2012.00644.x · Source: PubMed CITATIONS READS 961 2,825 25 authors, including: Sina M Adl Alastair Simpson University of Saskatchewan Dalhousie University 118 PUBLICATIONS 8,522 CITATIONS 264 PUBLICATIONS 10,739 CITATIONS SEE PROFILE SEE PROFILE Christopher E Lane David Bass University of Rhode Island Natural History Museum, London 82 PUBLICATIONS 6,233 CITATIONS 464 PUBLICATIONS 7,765 CITATIONS SEE PROFILE SEE PROFILE Some of the authors of this publication are also working on these related projects: Biodiversity and ecology of soil taste amoeba View project Predator control of diversity View project All content following this page was uploaded by Smirnov Alexey on 25 October 2017. The user has requested enhancement of the downloaded file. The Journal of Published by the International Society of Eukaryotic Microbiology Protistologists J. Eukaryot. Microbiol., 59(5), 2012 pp. 429–493 © 2012 The Author(s) Journal of Eukaryotic Microbiology © 2012 International Society of Protistologists DOI: 10.1111/j.1550-7408.2012.00644.x The Revised Classification of Eukaryotes SINA M. ADL,a,b ALASTAIR G. B. SIMPSON,b CHRISTOPHER E. LANE,c JULIUS LUKESˇ,d DAVID BASS,e SAMUEL S. BOWSER,f MATTHEW W. BROWN,g FABIEN BURKI,h MICAH DUNTHORN,i VLADIMIR HAMPL,j AARON HEISS,b MONA HOPPENRATH,k ENRIQUE LARA,l LINE LE GALL,m DENIS H. LYNN,n,1 HILARY MCMANUS,o EDWARD A. D. -
S41467-021-25308-W.Pdf
ARTICLE https://doi.org/10.1038/s41467-021-25308-w OPEN Phylogenomics of a new fungal phylum reveals multiple waves of reductive evolution across Holomycota ✉ ✉ Luis Javier Galindo 1 , Purificación López-García 1, Guifré Torruella1, Sergey Karpov2,3 & David Moreira 1 Compared to multicellular fungi and unicellular yeasts, unicellular fungi with free-living fla- gellated stages (zoospores) remain poorly known and their phylogenetic position is often 1234567890():,; unresolved. Recently, rRNA gene phylogenetic analyses of two atypical parasitic fungi with amoeboid zoospores and long kinetosomes, the sanchytrids Amoeboradix gromovi and San- chytrium tribonematis, showed that they formed a monophyletic group without close affinity with known fungal clades. Here, we sequence single-cell genomes for both species to assess their phylogenetic position and evolution. Phylogenomic analyses using different protein datasets and a comprehensive taxon sampling result in an almost fully-resolved fungal tree, with Chytridiomycota as sister to all other fungi, and sanchytrids forming a well-supported, fast-evolving clade sister to Blastocladiomycota. Comparative genomic analyses across fungi and their allies (Holomycota) reveal an atypically reduced metabolic repertoire for sanchy- trids. We infer three main independent flagellum losses from the distribution of over 60 flagellum-specific proteins across Holomycota. Based on sanchytrids’ phylogenetic position and unique traits, we propose the designation of a novel phylum, Sanchytriomycota. In addition, our results indicate that most of the hyphal morphogenesis gene repertoire of multicellular fungi had already evolved in early holomycotan lineages. 1 Ecologie Systématique Evolution, CNRS, Université Paris-Saclay, AgroParisTech, Orsay, France. 2 Zoological Institute, Russian Academy of Sciences, St. ✉ Petersburg, Russia. 3 St. -
Group of Microorganisms at the Animal-Fungal Boundary
16 Aug 2002 13:56 AR AR168-MI56-14.tex AR168-MI56-14.SGM LaTeX2e(2002/01/18) P1: GJC 10.1146/annurev.micro.56.012302.160950 Annu. Rev. Microbiol. 2002. 56:315–44 doi: 10.1146/annurev.micro.56.012302.160950 First published online as a Review in Advance on May 7, 2002 THE CLASS MESOMYCETOZOEA: A Heterogeneous Group of Microorganisms at the Animal-Fungal Boundary Leonel Mendoza,1 John W. Taylor,2 and Libero Ajello3 1Medical Technology Program, Department of Microbiology and Molecular Genetics, Michigan State University, East Lansing Michigan, 48824-1030; e-mail: [email protected] 2Department of Plant and Microbial Biology, University of California, Berkeley, California 94720-3102; e-mail: [email protected] 3Centers for Disease Control and Prevention, Mycotic Diseases Branch, Atlanta Georgia 30333; e-mail: [email protected] Key Words Protista, Protozoa, Neomonada, DRIP, Ichthyosporea ■ Abstract When the enigmatic fish pathogen, the rosette agent, was first found to be closely related to the choanoflagellates, no one anticipated finding a new group of organisms. Subsequently, a new group of microorganisms at the boundary between an- imals and fungi was reported. Several microbes with similar phylogenetic backgrounds were soon added to the group. Interestingly, these microbes had been considered to be fungi or protists. This novel phylogenetic group has been referred to as the DRIP clade (an acronym of the original members: Dermocystidium, rosette agent, Ichthyophonus, and Psorospermium), as the class Ichthyosporea, and more recently as the class Mesomycetozoea. Two orders have been described in the mesomycetozoeans: the Der- mocystida and the Ichthyophonida. So far, all members in the order Dermocystida have been pathogens either of fish (Dermocystidium spp. -
Coprophilous Fungal Community of Wild Rabbit in a Park of a Hospital (Chile): a Taxonomic Approach
Boletín Micológico Vol. 21 : 1 - 17 2006 COPROPHILOUS FUNGAL COMMUNITY OF WILD RABBIT IN A PARK OF A HOSPITAL (CHILE): A TAXONOMIC APPROACH (Comunidades fúngicas coprófilas de conejos silvestres en un parque de un Hospital (Chile): un enfoque taxonómico) Eduardo Piontelli, L, Rodrigo Cruz, C & M. Alicia Toro .S.M. Universidad de Valparaíso, Escuela de Medicina Cátedra de micología, Casilla 92 V Valparaíso, Chile. e-mail <eduardo.piontelli@ uv.cl > Key words: Coprophilous microfungi,wild rabbit, hospital zone, Chile. Palabras clave: Microhongos coprófilos, conejos silvestres, zona de hospital, Chile ABSTRACT RESUMEN During year 2005-through 2006 a study on copro- Durante los años 2005-2006 se efectuó un estudio philous fungal communities present in wild rabbit dung de las comunidades fúngicas coprófilos en excementos de was carried out in the park of a regional hospital (V conejos silvestres en un parque de un hospital regional Region, Chile), 21 samples in seven months under two (V Región, Chile), colectándose 21 muestras en 7 meses seasonable periods (cold and warm) being collected. en 2 períodos estacionales (fríos y cálidos). Un total de Sixty species and 44 genera as a total were recorded in 60 especies y 44 géneros fueron detectados en el período the sampling period, 46 species in warm periods and 39 de muestreo, 46 especies en los períodos cálidos y 39 en in the cold ones. Major groups were arranged as follows: los fríos. La distribución de los grandes grupos fue: Zygomycota (11,6 %), Ascomycota (50 %), associated Zygomycota(11,6 %), Ascomycota (50 %), géneros mitos- mitosporic genera (36,8 %) and Basidiomycota (1,6 %). -
January 2015
Supplement to Mycologia Vol. 66(1) January 2015 Newsletter of the Mycological Society of America — In This Issue — New MSA Award: Articles The Emory Simmons Research Award Emory Simmons Research Award NATS Student Award Recipient Spotlight The Emory Simmons Research Award is open to MSA Student Section MSA Student Award Recipient Spotlight members of the Mycological Post doc Spotlight Society of America for the Poster from the MSA Student Section study of classification of MSA Business dematiaceous anamorphs of Executive Vice President’s Report ascomycetes 2014 Annual Reports correction MSA Directory 2014-2015 Application deadline: Febru- ary 15, annually beginning in Mycological News Dr. Rubén Durán 2015 until no later than 2024 The 2nd International Workshop on Ascomycete Systematics Award Amount: approxi- MASMC 2015 mately $10,000 Fungal Genetics Stock Center moves Student Section Skill Share Apply to the Chair, Research Awards Committee Fungi in the News Fungal allies of whitebark pine Requirements: Flying Fungus 1. The applicant must be a current member of MSA. Truffles have a THC-like substance in them 2. A single pdf file must be submitted consisting of i) cover letter, ii) 5 page maximum proposal for the study, iii) budget, and iv) Mycological Classifieds Books for sale current curriculum vita, to the Chair, Research Awards Commit- Fungi Treasures tee, for distribution to the committee. Fifth Kingdom, The Outer Spores Biological control, biotechnology, 3. A detailed final report is due to the Chair, Research Awards and regulatory services Committee, within two years of receiving the award. 4. The proposal will be judged on originality and the possibility to Mycologist’s Bookshelf Books in need of reviewers advance the field. -
Piptocephalis Formosana, a New Species from Taiwan
Botanical Studies (2009) 50: 69-72. microbioloGY Piptocephalis formosana, a new species from Taiwan Hsiao-ManHO1,*andPaulM.KIRK2 1Department of Science Education, National Taipei University of Education, Taipei, 10671, Taiwan, ROC 2CABI Europe-UK, Bakeham Lane, Egham, Surrey TW20 9TY, UK (ReceivedFebruary15,2008;AcceptedJuly30,2008) ABSTRACT. Piptocephalis formosana,isolatedfromforestsoilinTaiwan,isdescribedasnew.Compared withsimilarspecies,P. formosanadiffersinhavingsmallerheadcellsthatare4-5lobed,cylindrical merosporangiacontaining(2-)3(-4)merospores,andsmallermerosporessurroundedbyawaterdropletwhen mature. Keywords:Piptocephalis formosana;Taiwan;Zygomycetes. INTRODUCTION dissectingmicroscope.SporophoresofPiptocephaliswere transferredalongwiththeirhosttofreshcornmealagar Speciesof PiptocephalisdeBary(Piptocephalidaceae, platesandincubatedat24°C.Afteroneweek,themature Zoopagales,Zygomycota)areobligateparasitesofother sporesofPiptocephalisweretransferredagainbytouching fungi,mainlyMucorales,andusuallycanbeisolated maturemerosporangiawithasterilizedneedletopre- fromherbivoredung,soilorleaflitter.Thesporophores markedspotsonfreshcornmealagarplates.Onedayafter aredichotomouslybranchedseveraltimesandterminate inoculationofPiptocephalismerospores,thesporesofthe in a usually sterile deciduous head cell. Many rod- hostwereinoculatedinthevicinityoftheparasite.After shapedmerosporangia, containingavariablenumberof 4-7days,thehostwasparasitizedbythePiptocephalis merospores,arebornontheheadcell.Thematurespores species. remaindryorareenclosedinaliquiddroplet(Kirk,1978). -
First Report of Basidiolum Fimbriatum Since 1861, with Comments on Its
Mycol. Res. 107 (2): 245–250 (February 2003). f The British Mycological Society 245 DOI: 10.1017/S0953756203007287 Printed in the United Kingdom. First report of Basidiolum fimbriatum since 1861, with comments on its development, occurrence, distribution and relationship with other fungi Merlin M. WHITE Department of Ecology and Evolutionary Biology, University of Kansas, Lawrence, Kansas, 66045-2106, USA. E-mail : [email protected] Received 1 October 2002; accepted 19 December 2002. An obscure parasitic fungus, Basidiolum fimbriatum, was found on Amoebidium parasiticum (Amoebidiales) associated with Caenis sp. (mayfly) nymphs, during a survey of gut fungi (Trichomycetes) from a small stream in northeastern Kansas, USA. The hindguts of the nymphs harboured a species of Legeriomycetaceae and Paramoebidium sp. This is the first report of the ectocommensal protozoan, A. parasiticum, associated with the gills of Caenidae (Ephemeroptera), and of B. fimbriatum in the 142 years since its original documentation from Wiesbaden, Germany. B. fimbriatum is recorded from two midwestern USA states (Kansas and Iowa) and the morphological and developmental features of the parasite on its host are compared with Cienkowski’s original observations and interpretation. B. fimbriatum is characterized as a parasitic fungus possessing merosporangia that form on a simple pyriform thallus that penetrates and consumes its host via a haustorial network. The hypothesis that B. fimbriatum is most closely related to members of the order Zoopagales sensu Benjamin (1979) is proposed. The importance of future collections and molecular-based phylogenetic approaches to place this parasitic fungus within a current system of classification are highlighted. INTRODUCTION (Zygomycota), more commonly known as gut fungi (Lichtwardt 1986).