Salix × Meyeriana (= Salix Pentandra × S
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Reflections on the Semantic Integration of Archaeological Datasets and Grey Literature Reports
Reflections on the semantic integration of archaeological datasets and grey literature reports Douglas Tudhope & Ceri Binding Hypermedia Research Group, University of South Wales [email protected] [email protected] ARIADNE is funded by the European Commission's Seventh Framework Programme Case study of detailed research data integration • Extracts of 5 archaeological datasets, output from NLP on extracts from 25 grey literature reports • broad theme of wooden material, objects and samples dated via dendrochronological analysis • Multilingual - English, Dutch and Swedish data/reports • Data integration via CIDOC CRM and Getty AAT • 1.09 million RDF triples • 23,594 records • 37,935 objects • Demonstration query builder for easier cross-search and browse of integrated datasets • Concept based query expansion via AAT General workflow and architecture STELETO data conversion application • A simpler, cross-platform version of the (previous project) STELLAR.Console application • Performs bulk transformation of tabular delimited data via user-defined templates • Cross platform (tested on Linux and Windows) • Open source (https://github.com/cbinding/steleto) • Flexible (can produce any textual output format) • Simple, fast ARIADNE vocabulary mapping to Getty AAT • Subject metadata in different languages , so potentially: – useful resources missed – false results from homographs (eg 'coin’ French for corner, 'boot’ German for boat and 'monster’ Dutch for sample) • Scalable solution – employ hub architecture • Getty AAT -
Willows of Interior Alaska
1 Willows of Interior Alaska Dominique M. Collet US Fish and Wildlife Service 2004 2 Willows of Interior Alaska Acknowledgements The development of this willow guide has been made possible thanks to funding from the U.S. Fish and Wildlife Service- Yukon Flats National Wildlife Refuge - order 70181-12-M692. Funding for printing was made available through a collaborative partnership of Natural Resources, U.S. Army Alaska, Department of Defense; Pacific North- west Research Station, U.S. Forest Service, Department of Agriculture; National Park Service, and Fairbanks Fish and Wildlife Field Office, U.S. Fish and Wildlife Service, Department of the Interior; and Bonanza Creek Long Term Ecological Research Program, University of Alaska Fairbanks. The data for the distribution maps were provided by George Argus, Al Batten, Garry Davies, Rob deVelice, and Carolyn Parker. Carol Griswold, George Argus, Les Viereck and Delia Person provided much improvement to the manuscript by their careful editing and suggestions. I want to thank Delia Person, of the Yukon Flats National Wildlife Refuge, for initiating and following through with the development and printing of this guide. Most of all, I am especially grateful to Pamela Houston whose support made the writing of this guide possible. Any errors or omissions are solely the responsibility of the author. Disclaimer This publication is designed to provide accurate information on willows from interior Alaska. If expert knowledge is required, services of an experienced botanist should be sought. Contents -
A Guide to the Identification of Salix (Willows) in Alberta
A Guide to the identification of Salix (willows) in Alberta George W. Argus 2008 Devonian Botanical Garden Workshop on willow identification Jasper National Park, Alberta 2 Available from: George W. Argus 310 Haskins Rd, Merrickville R3, Ontario, Canada K0G 1N0 email: [email protected] http://aknhp.uaa.alaska.edu/willow/index.html 3 CONTENTS Preface............................................................................................................................... 5 Salicaceae ...........…………………...........……........................................……..........…. 8 Classification ..........……………….…..….................................................….............…. 9 Some Useful Morphological Characters .......................................................….............. 11 Key to the Species.............................................................................................................13 Taxonomic Treatment .........................................................…..……….………............ 18 Glossary .....………………………………………....…..................………...........….... 61 Cited and Selected References ......................................................................................... 64 Salix Web Sites ...................……..................................……..................……............…. 68 Distribution Maps ............................................................................................................ 69 TABLES Table 1. Comparison of Salix athabascensis and Salix pedicellaris .............................. -
The Effects of DNA Methylation Inhibition on Flower Development in the Dioecious Plant Salix Viminalis
Article The Effects of DNA Methylation Inhibition on Flower Development in the Dioecious Plant Salix Viminalis Yun-He Cheng 1,2 , Xiang-Yong Peng 3, Yong-Chang Yu 1,2, Zhen-Yuan Sun 1,2 and Lei Han 1,2,* 1 Research Institute of Forestry, Chinese Academy of Forestry, Beijing 100193, China; [email protected] (Y.-H.C.); [email protected] (Y.-C.Y.); [email protected] (Z.-Y.S.) 2 Key Laboratory of Tree Breeding and Cultivation, State Forestry Administration, Beijing 100193, China 3 Life and Science College, Qufu Normal University, Qufu 273100, China; [email protected] * Correspondence: [email protected]; Tel.: +86-010-62889652 Received: 25 January 2019; Accepted: 16 February 2019; Published: 18 February 2019 Abstract: DNA methylation, an important epigenetic modification, regulates the expression of genes and is therefore involved in the transitions between floral developmental stages in flowering plants. To explore whether DNA methylation plays different roles in the floral development of individual male and female dioecious plants, we injected 5-azacytidine (5-azaC), a DNA methylation inhibitor, into the trunks of female and male basket willow (Salix viminalis L.) trees before flower bud initiation. As expected, 5-azaC decreased the level of DNA methylation in the leaves of both male and female trees during floral development; however, it increased DNA methylation in the leaves of male trees at the flower transition stage. Furthermore, 5-azaC increased the number, length and diameter of flower buds in the female trees but decreased these parameters in the male trees. The 5-azaC treatment also decreased the contents of soluble sugars, starch and reducing sugars in the leaves of the female plants, while increasing them in the male plants at the flower transition stage; however, this situation was largely reversed at the flower development stage. -
Tree Planting and Management
COMMONWEALTH WAR GRAVES COMMISSION Tree Planting and Management Breadth of Opportunity The spread of the Commission's responsibilities over some 148 countries in temperate, mediterranean, tropical and desert climates provides wonderful opportunities to experiment with nature's wealth of tree species. We are particularly fortunate in being able to grow many interesting and beautiful trees and we will explain how we manage them and what splendid specimens they can make. Why Plant Trees? Trees are planted for a variety of reasons: their amenity value, leaf shape and size, flowers, fruit, habit, form, bark, landscape value, shelter or screening, backcloth planting, shade, noise and pollution reduction, soil stabilisation and to encourage wild life. Often we plant trees solely for their amenity value. That is, the beauty of the tree itself. This can be from the leaves such as those in Robinia pseudoacacia 'Frisia', the flowers in the tropical tree Tabebuia or Albizia, the crimson stems of the sealing wax palm (Cyrtostachys renda), or the fruit as in Magnolia grandiflora. above: Sealing wax palms at Taiping War Cemetery, Malaysia with insert of the fruit of Magnolia grandiflora Selection Generally speaking the form of the left: The tropical tree Tabebuia tree is very often a major contributing factor and this, together with a sound knowledge of below: Flowers of the tropical the situation in which the tree is to tree Albizia julibrissin be grown, guides the decision to the best choice of species. Exposure is a major limitation to the free choice of species in northern Europe especially and trees such as Sorbus, Betula, Tilia, Fraxinus, Crataegus and fastigiate yews play an important role in any landscape design where the elements are seriously against a wider selection. -
Cultivated Willows Would Not Be Appropriate Without Mention of the ‘WEEPING WILLOW’
Alexander Robertson Notes on willows cultivated in Scotland and a few sketches of willows sampled from my clonal collection HISTORICAL NOTES Since the knowledge of willows is of great antiquity, it is with the ancient Greeks and Romans we shall begin, for among these people numerous written records remain. The growth habit, ecology, cultivation and utilization of willows was well— understood by Theophrastus, Ovid, Herodotus, Pliny and Dioscorides. Virgil was also quite familiar with willow, e.g. Damoetas complains that: “Galatea, saucy girl, pelts me with apples and then runs off to the willows”. ECLOGIJE III and of foraging bees: “Far and wide they feed on arbutus, pale-green willows, on cassia and ruddy crocus .. .“ GEORGICS IV Theophrastus of Eresos (370—285 B.C.) discussed many aspects of willows throughout his Enquiry into Plants including habitats, wood quality, coppicing and a variety of uses. Willows, according to Theophrastus are lovers of wet places and marshes. But he also notes certain amphibious traits of willows growing in mountains and plains. To Theophrastus they appeared to possess no fruits and quite adequately reproduced themselves from roots, were tolerant to flooding and frequent coppicing. “Even willows grow old and when they are cut, no matter at what height, they shoot up again.” He described the wood as cold, tough, light and resilient—qualities which made it useful for a variety of purposes, especially shields. Such were the diverse virtues of willow that he suggested introducing it for plant husbandry. Theophrastus noted there were many different kinds of willows; three of the best known being black willow (Salix fragilis), white willow (S. -
Salix L.) in the European Alps
diversity Review The Evolutionary History, Diversity, and Ecology of Willows (Salix L.) in the European Alps Natascha D. Wagner 1 , Li He 2 and Elvira Hörandl 1,* 1 Department of Systematics, Biodiversity and Evolution of Plants (with Herbarium), University of Goettingen, Untere Karspüle 2, 37073 Göttingen, Germany; [email protected] 2 College of Forestry, Fujian Agriculture and Forestry University, Fuzhou 350002, China; [email protected] * Correspondence: [email protected] Abstract: The genus Salix (willows), with 33 species, represents the most diverse genus of woody plants in the European Alps. Many species dominate subalpine and alpine types of vegetation. Despite a long history of research on willows, the evolutionary and ecological factors for this species richness are poorly known. Here we will review recent progress in research on phylogenetic relation- ships, evolution, ecology, and speciation in alpine willows. Phylogenomic reconstructions suggest multiple colonization of the Alps, probably from the late Miocene onward, and reject hypotheses of a single radiation. Relatives occur in the Arctic and in temperate Eurasia. Most species are widespread in the European mountain systems or in the European lowlands. Within the Alps, species differ eco- logically according to different elevational zones and habitat preferences. Homoploid hybridization is a frequent process in willows and happens mostly after climatic fluctuations and secondary contact. Breakdown of the ecological crossing barriers of species is followed by introgressive hybridization. Polyploidy is an important speciation mechanism, as 40% of species are polyploid, including the four endemic species of the Alps. Phylogenomic data suggest an allopolyploid origin for all taxa analyzed Citation: Wagner, N.D.; He, L.; so far. -
How Does Genome Size Affect the Evolution of Pollen Tube Growth Rate, a Haploid Performance Trait?
Manuscript bioRxiv preprint doi: https://doi.org/10.1101/462663; this version postedClick April here18, 2019. to The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv aaccess/download;Manuscript;PTGR.genome.evolution.15April20 license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. 1 Effects of genome size on pollen performance 2 3 4 5 How does genome size affect the evolution of pollen tube growth rate, a haploid 6 performance trait? 7 8 9 10 11 John B. Reese1,2 and Joseph H. Williams2 12 Department of Ecology and Evolutionary Biology, University of Tennessee, Knoxville, TN 13 37996, U.S.A. 14 15 16 17 1Author for correspondence: 18 John B. Reese 19 Tel: 865 974 9371 20 Email: [email protected] 21 1 bioRxiv preprint doi: https://doi.org/10.1101/462663; this version posted April 18, 2019. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. 22 ABSTRACT 23 Premise of the Study – Male gametophytes of most seed plants deliver sperm to eggs via a 24 pollen tube. Pollen tube growth rates (PTGRs) of angiosperms are exceptionally rapid, a pattern 25 attributed to more effective haploid selection under stronger pollen competition. Paradoxically, 26 whole genome duplication (WGD) has been common in angiosperms but rare in gymnosperms. -
How Does Genome Size Affect the Evolution of Pollen Tube Growth Rate, a Haploid Performance Trait?
bioRxiv preprint doi: https://doi.org/10.1101/462663; this version posted November 5, 2018. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. 1 Effects of genome size on pollen performance 2 3 4 5 6 How does genome size affect the evolution of pollen tube growth rate, a haploid 7 performance trait? 8 9 10 11 12 John B. Reese1,2 and Joseph H. Williams1 13 Department of Ecology and Evolutionary Biology, University of Tennessee, Knoxville, TN 14 37996, U.S.A. 15 16 17 18 1Author for correspondence: 19 John B. Reese 20 Tel: 865 974 9371 21 Email: [email protected] 22 23 24 1 bioRxiv preprint doi: https://doi.org/10.1101/462663; this version posted November 5, 2018. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. 25 ABSTRACT 26 Premise of the Study - Male gametophytes of seed plants deliver sperm to eggs via a pollen 27 tube. Pollen tube growth rate (PTGR) may evolve rapidly due to pollen competition and haploid 28 selection, but many angiosperms are currently polyploid and all have polyploid histories. 29 Polyploidy should initially accelerate PTGR via “genotypic effects” of increased gene dosage 30 and heterozygosity on metabolic rates, but “nucleotypic effects” of genome size on cell size 31 should reduce PTGR. -
Reference Plant List
APPENDIX J NATIVE & INVASIVE PLANT LIST The following tables capture the referenced plants, native and invasive species, found throughout this document. The Wildlife Action Plan Team elected to only use common names for plants to improve the readability, particular for the general reader. However, common names can create confusion for a variety of reasons. Common names can change from region-to-region; one common name can refer to more than one species; and common names have a way of changing over time. For example, there are two widespread species of greasewood in Nevada, and numerous species of sagebrush. In everyday conversation generic common names usually work well. But if you are considering management activities, landscape restoration or the habitat needs of a particular wildlife species, the need to differentiate between plant species and even subspecies suddenly takes on critical importance. This appendix provides the reader with a cross reference between the common plant names used in this document’s text, and the scientific names that link common names to the precise species to which writers referenced. With regards to invasive plants, all species listed under the Nevada Revised Statute 555 (NRS 555) as a “Noxious Weed” will be notated, within the larger table, as such. A noxious weed is a plant that has been designated by the state as a “species of plant which is, or is likely to be, detrimental or destructive and difficult to control or eradicate” (NRS 555.05). To assist the reader, we also included a separate table detailing the noxious weeds, category level (A, B, or C), and the typical habitats that these species invade. -
Irish Vegetation Classification (IVC) Community Synopsis
Irish Vegetation Classification (IVC) www.biodiversityireland.ie/ivc Community Synopsis Scientific name Salix cinerea – Urtica dioica woodland Common name Grey Willow – Common Nettle woodland Community code WL3D Vegetation This rather variable community comprises wet woodland dominated by Salix spp. There is usually a low canopy (mean canopy height = 12.4 m, n = 32) in which Fraxinus excelsior typically accompanies the willows while Alnus glutinosa and Acer pseudoplatanus are also frequent. In the diverse field layer Rubus fruticosus agg., Hedera helix, Filipendula ulmaria, Angelica sylvestris, Urtica dioica and Dryopteris dilatata are constants while frequently found plants include Ranunculus repens, Galium aparine, Cardamine flexuosa, Agrostis stolonifera, Carex remota, Galium palustre, Chrysosplenium oppositifolium and Mentha aquatica. The bryophyte layer is composed mostly of Kindbergia praelonga, Brachythecium rutabulum and Hypnum cupressiforme. Further variation is discussed under ‘Sub-communities’ below. Ecology This community mainly occurs on wet gley soils but also on basin peats and well-drained mineral soils (mean organic content = 40.5%, n = 33). It is found almost always on flat ground in the lowlands (mean slope = 0.5°, n = 33; mean altitude = 51 m, n = 33). Conditions are relatively base-rich and quite fertile. Sub-communities Two quite distinct sub-communities have been described for this community. The Salix fragilis – Calystegia sepium sub- community (WL3Di) differs chiefly in the presence of one or more species of willow that are regarded as archaeophytes in Ireland (Salix fragilis, Salix alba, Salix viminalis or Salix triandra), although Salix cinerea is still frequent. The field layer is usually a dense tangle including Calystegia sepium, Iris pseudacorus, Oenanthe crocata, Rumex sanguineus, Phalaris arundinacea, Valeriana officinalis and Solanum dulcamara. -
(Salix) Using Ovule Numbers
75 Marchenko and Kuzovkina . Silvae Genetica (2021) 70, 75 - 83 Identification of hybrid formulae of a few willows (Salix) using ovule numbers Аlexander M. Marchenko1 and Yulia A. Kuzovkina2* 1 Russian Park of Water Gardens, Moscow, Russia 2 Department of Plant Sciences, University of Connecticut, Storrs, CT, USA * Corresponding author: Yulia A. Kuzovkina, E-mail: [email protected] Abstract individual plant does not provide the full range of reproductive structures that are important for identification. The nonconcur- Salix is a genus of considerable taxonomic complexity, and rent phenology of generative and vegetative structures makes accurate identification of its species and hybrids is not always it impossible to observe both morphological characters on one possible. Quantification of ovules was used in this study to plant at the same time. Willow identification is also complica- verify the parentage of a few hybrids of Salix. It has been shown ted by phenotypic variability during different developmental that ovule numbers in willow hybrids are the mean of the ovu- stages (stipules and leaf hairs may appear and disappear le numbers of their parents. The ovule index of a prostrate spe- during the growing season) and habitat conditions (the size cimen of S. ×cottetii affirmed that this was a hybrid ofS. myrsi- and thickness of leaves depends on the degree of exposure to nifolia Salisb. and S. retusa L., and the ovule index of the sunlight) (Skvortsov 1999; Dickmann and Kuzovkina 2014). In ornamental cultivar ‘The Hague’ affirmed that this was a hybrid addition, considerable individual variability and polymor- of S. caprea L. and S.