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SEDIMENT REMOVAL ACTIVITIES of the SEA CUCUMBERS Pearsonothuria Graeffei and Actinopyga Echinites in TAMBISAN, SIQUIJOR ISLAND, CENTRAL PHILIPPINES
Jurnal Pesisir dan Laut Tropis Volume 1 Nomor 1 Tahun 2018 SEDIMENT REMOVAL ACTIVITIES OF THE SEA CUCUMBERS Pearsonothuria graeffei AND Actinopyga echinites IN TAMBISAN, SIQUIJOR ISLAND, CENTRAL PHILIPPINES Lilibeth A. Bucol1, Andre Ariel Cadivida1, and Billy T. Wagey2* 1. Negros Oriental State University (Main Campus I) 2. Faculty of Fisheries and Marine Science, UNSRAT, Manado, Indonesia *e-mail: [email protected] Teripang terkenal mengkonsumsi sejumlah besar sedimen dan dalam proses meminimalkan jumlah lumpur yang negatif dapat mempengaruhi organisme benthic, termasuk karang. Kegiatan pengukuran kuantitas pelepasan sedimen dua spesies holothurians (Pearsonuthuria graeffei dan Actinophyga echites) ini dilakukan di area yang didominasi oleh ganggang dan terumbu terumbu karang di Pulau Siquijor, Filipina. Hasil penelitian menunjukkan bahwa P. graeffei melepaskan sedimen sebanyak 12.5±2.07% sementara pelepasan sedimen untuk A. echinites sebanyak 10.4±3.79%. Hasil penelitian menunjukkan bahwa kedua spesies ini lebih memilih substrat yang didominasi oleh macroalgae, diikuti oleh substrat berpasir dan coralline alga. Kata kunci: teripang, sedimen, Pulau Siquijor INTRODUCTION the central and southern Philippines. These motile species are found in Coral reefs worldwide are algae-dominated coral reef. declining at an alarming rate due to P. graffei occurs mainly on natural and human-induced factors corals and sponge where they appear (Pandolfi et al. 2003). Anthropogenic to graze on epifaunal algal films, while factors include overfishing, pollution, A. echinites is a deposit feeding and agriculture resulting to high holothurian that occurs mainly in sandy sedimentation (Hughes et al. 2003; environments. These two species also Bellwood et al. 2004). Sedimentation is differ on their diel cycle since also a major problem for reef systems A. -
SPC Beche-De-Mer Information Bulletin #39 – March 2019
ISSN 1025-4943 Issue 39 – March 2019 BECHE-DE-MER information bulletin v Inside this issue Editorial Towards producing a standard grade identification guide for bêche-de-mer in This issue of the Beche-de-mer Information Bulletin is well supplied with Solomon Islands 15 articles that address various aspects of the biology, fisheries and S. Lee et al. p. 3 aquaculture of sea cucumbers from three major oceans. An assessment of commercial sea cu- cumber populations in French Polynesia Lee and colleagues propose a procedure for writing guidelines for just after the 2012 moratorium the standard identification of beche-de-mer in Solomon Islands. S. Andréfouët et al. p. 8 Andréfouët and colleagues assess commercial sea cucumber Size at sexual maturity of the flower populations in French Polynesia and discuss several recommendations teatfish Holothuria (Microthele) sp. in the specific to the different archipelagos and islands, in the view of new Seychelles management decisions. Cahuzac and others studied the reproductive S. Cahuzac et al. p. 19 biology of Holothuria species on the Mahé and Amirantes plateaux Contribution to the knowledge of holo- in the Seychelles during the 2018 northwest monsoon season. thurian biodiversity at Reunion Island: Two previously unrecorded dendrochi- Bourjon and Quod provide a new contribution to the knowledge of rotid sea cucumbers species (Echinoder- holothurian biodiversity on La Réunion, with observations on two mata: Holothuroidea). species that are previously undescribed. Eeckhaut and colleagues P. Bourjon and J.-P. Quod p. 27 show that skin ulcerations of sea cucumbers in Madagascar are one Skin ulcerations in Holothuria scabra can symptom of different diseases induced by various abiotic or biotic be induced by various types of food agents. -
AC22 Inf. 1 (English Only/Únicamente En Inglés/Seulement En Anglais)
AC22 Inf. 1 (English only/Únicamente en inglés/Seulement en anglais) CONVENTION ON INTERNATIONAL TRADE IN ENDANGERED SPECIES OF WILD FAUNA AND FLORA ___________________ Twenty-second meeting of the Animals Committee Lima (Peru), 7-13 July 2006 SUMMARY OF FAO AND CITES WORKSHOPS ON SEA CUCUMBERS: MAJOR FINDINGS AND CONCLUSIONS 1. This document has been submitted by the Secretariat and was prepared by Verónica Toral-Granda, Charles Darwin Foundation, Galapagos Islands (Email: [email protected]) Advances in Sea Cucumber Aquaculture and Management (ASCAM), convened by the Food and Agriculture Organization of the United Nations (FAO); 14-18 October 2003, Dalian, China 2. In October 2003, FAO gathered in Dalian, China, 11 local and 37 international experts from 20 countries on sea cucumbers biology, ecology, fisheries and aquaculture in the “Advances in sea cucumber aquaculture and management (ASCAM)” workshop. This workshop was organized because of the intense fishing effort for many sea cucumber species all over the world, the ever increasing market pressure for harvesting these species and recent technological developments on fishery management, aquaculture and stock enhancement techniques. 3. The workshop had three sessions focusing on: (i) Status of sea cucumber and utilization; (ii) Sea cucumber resources management; and (iii) Aquaculture advances. As a whole, the workshop presented up-to-date information on the status of different sea cucumber populations around the world. It also emphasized the experience of each participating country in management and identified information gaps that needed to be addressed. Additionally, it devoted one session to the advances of artificial reproduction, aquaculture and farming of selected sea cucumber species, with special emphasis on Apostichopus japonicus. -
Yellow Coloured Mats from Lava Tubes of La Palma (Canary Islands, Spain
www.nature.com/scientificreports OPEN Yellow coloured mats from lava tubes of La Palma (Canary Islands, Spain) are dominated by Received: 27 July 2017 Accepted: 16 January 2018 metabolically active Actinobacteria Published: xx xx xxxx Jose L. Gonzalez-Pimentel1, Ana Z. Miller 1, Valme Jurado1, Leonila Laiz1, Manuel F. C. Pereira2 & Cesareo Saiz-Jimenez1 Microbial diversity in lava tubes from Canary Islands (Spain) has never been explored thus far ofering a unique opportunity to study subsurface microbiology. Abundant yellow coloured mats developing on coralloid speleothems in a lava tube from La Palma Islands were studied by next-generation sequencing and DNA/RNA clone library analyses for investigating both total and metabolically active bacteria. In addition, morphological and mineralogical characterization was performed by feld emission scanning electron microscopy (FESEM), micro-computed tomography, X-ray difraction and infrared spectroscopy to contextualize sequence data. This approach showed that the coralloid speleothems consist of banded siliceous stalactites composed of opal-A and hydrated halloysite. Analytical pyrolysis was also conducted to infer the possible origin of cave wall pigmentation, revealing that lignin degradation compounds can contribute to speleothem colour. Our RNA-based study showed for the frst time that members of the phylum Actinobacteria, with 55% of the clones belonging to Euzebyales order, were metabolically active components of yellow mats. In contrast, the DNA clone library revealed that around 45% of clones were afliated to Proteobacteria. Composition of microbial phyla obtained by NGS reinforced the DNA clone library data at the phylum level, in which Proteobacteria was the most abundant phylum followed by Actinobacteria. Microbial mats frequently coat extensive areas of walls and ceilings of karstic caves and lava tubes, usually devel- oping yellow, tan, orange, grey, pink and white-coloured bioflms1–6. -
Biological and Taxonomic Perspective of Triterpenoid Glycosides of Sea Cucumbers of the Family Holothuriidae (Echinodermata, Holothuroidea)
Comparative Biochemistry and Physiology, Part B 180 (2015) 16–39 Contents lists available at ScienceDirect Comparative Biochemistry and Physiology, Part B journal homepage: www.elsevier.com/locate/cbpb Review Biological and taxonomic perspective of triterpenoid glycosides of sea cucumbers of the family Holothuriidae (Echinodermata, Holothuroidea) Magali Honey-Escandón a,⁎, Roberto Arreguín-Espinosa a, Francisco Alonso Solís-Marín b,YvesSamync a Departamento de Química de Biomacromoléculas, Instituto de Química, Universidad Nacional Autónoma de México, Circuito Exterior s/n, Ciudad Universitaria, C.P. 04510 México, D. F., Mexico b Laboratorio de Sistemática y Ecología de Equinodermos, Instituto de Ciencias del Mar y Limnología, Universidad Nacional Autónoma de México, Apartado Postal 70-350, C.P. 04510 México, D. F., Mexico c Scientific Service of Heritage, Invertebrates Collections, Royal Belgian Institute of Natural Sciences, Vautierstraat 29, B-1000 Brussels, Belgium article info abstract Article history: Since the discovery of saponins in sea cucumbers, more than 150 triterpene glycosides have been described for Received 20 May 2014 the class Holothuroidea. The family Holothuriidae has been increasingly studied in search for these compounds. Received in revised form 18 September 2014 With many species awaiting recognition and formal description this family currently consists of five genera and Accepted 18 September 2014 the systematics at the species-level taxonomy is, however, not yet fully understood. We provide a bibliographic Available online 28 September 2014 review of the triterpene glycosides that has been reported within the Holothuriidae and analyzed the relationship of certain compounds with the presence of Cuvierian tubules. We found 40 species belonging to four genera and Keywords: Cuvierian tubules 121 compounds. -
Sphingolipids of Asteroidea and Holothuroidea: Structures and Biological Activities
marine drugs Review Sphingolipids of Asteroidea and Holothuroidea: Structures and Biological Activities Timofey V. Malyarenko 1,2,*, Alla A. Kicha 1, Valentin A. Stonik 1,2 and Natalia V. Ivanchina 1,* 1 G.B. Elyakov Pacific Institute of Bioorganic Chemistry, Far Eastern Branch of the Russian Academy of Sciences, Pr. 100-let Vladivostoku 159, 690022 Vladivostok, Russia; [email protected] (A.A.K.); [email protected] (V.A.S.) 2 Department of Bioorganic Chemistry and Biotechnology, School of Natural Sciences, Far Eastern Federal University, Sukhanova Str. 8, 690000 Vladivostok, Russia * Correspondence: [email protected] (T.V.M.); [email protected] (N.V.I.); Tel.: +7-423-2312-360 (T.V.M.); Fax: +7-423-2314-050 (T.V.M.) Abstract: Sphingolipids are complex lipids widespread in nature as structural components of biomembranes. Commonly, the sphingolipids of marine organisms differ from those of terres- trial animals and plants. The gangliosides are the most complex sphingolipids characteristic of vertebrates that have been found in only the Echinodermata (echinoderms) phylum of invertebrates. Sphingolipids of the representatives of the Asteroidea and Holothuroidea classes are the most studied among all echinoderms. In this review, we have summarized the data on sphingolipids of these two classes of marine invertebrates over the past two decades. Recently established structures, properties, and peculiarities of biogenesis of ceramides, cerebrosides, and gangliosides from starfishes and holothurians are discussed. The purpose of this review is to provide the most complete informa- tion on the chemical structures, structural features, and biological activities of sphingolipids of the Asteroidea and Holothuroidea classes. -
Community Structure, Diversity, and Distribution Patterns of Sea Cucumber
Community structure, diversity, and distribution patterns of sea cucumber (Holothuroidea) in the coral reef area of Sapeken Islands, Sumenep Regency, Indonesia 1Abdulkadir Rahardjanto, 2Husamah, 2Samsun Hadi, 1Ainur Rofieq, 2Poncojari Wahyono 1 Biology Education, Postgraduate Directorate, Universitas Muhammadiyah Malang, Malang, East Java, Indonesia; 2 Biology Education, Faculty of Teacher Training and Education, Universitas Muhammadiyah Malang, Malang, Indonesia. Corresponding author: A. Rahardjanto, [email protected] Abstract. Sea cucumbers (Holothuroidea) are one of the high value marine products, with populations under very critical condition due to over exploitation. Data and information related to the condition of sea cucumber communities, especially in remote islands, like the Sapeken Islands, Sumenep Regency, East Java, Indonesia, is still very limited. This study aimed to determine the species, community structure (density, frequency, and important value index), species diversity index, and distribution patterns of sea cucumbers found in the reef area of Sapeken Islands, using a quantitative descriptive study. This research was conducted in low tide during the day using the quadratic transect method. Data was collected by making direct observations of the population under investigation. The results showed that sea cucumbers belonged to 11 species, from 2 orders: Aspidochirotida, with the species Holothuria hilla, Holothuria fuscopunctata, Holothuria impatiens, Holothuria leucospilota, Holothuria scabra, Stichopus horrens, Stichopus variegates, Actinopyga lecanora, and Actinopyga mauritiana and order Apodida, with the species Synapta maculata and Euapta godeffroyi. The density ranged from 0.162 to 1.37 ind m-2, and the relative density was between 0.035 and 0.292 ind m-2. The highest density was found for H. hilla and the lowest for S. -
Sea Cucumber.Pdf
Cover photograph: Underwater photograph of an adult brown sea cucumber Isostichopus fuscus (Ludwig, 1875) at Santa Cruz, Galápagos Islands, Ecuador; courtesy Steven W. Purcell. FAO FISHERIES AND Managing sea cucumber AQUACULTURE TECHNICAL fisheries with an ecosystem PAPER approach 520 By Steven W. Purcell FAO Consultant National Marine Science Centre Southern Cross University Coffs Harbour, NSW, Australia Edited and compiled by Alessandro Lovatelli Fishery Resources Officer (Aquaculture) Fisheries and Aquaculture Resources Use and Conservation Division FAO Fisheries and Aquaculture Department Rome, Italy Marcelo Vasconcellos FAO Consultant Institute of Oceanography Federal University of Rio Grande Rio Grande, RS, Brazil and Yimin Ye Senior Fishery Resources Officer Fisheries and Aquaculture Resources Use and Conservation Division FAO Fisheries and Aquaculture Department Rome, Italy FOOD AND AGRICULTURE ORGANIZATION OF THE UNITED NATIONS Rome, 2010 The designations employed and the presentation of material in this information product do not imply the expression of any opinion whatsoever on the part of the Food and Agriculture Organization of the United Nations (FAO) concerning the legal or development status of any country, territory, city or area or of its authorities, or concerning the delimitation of its frontiers or boundaries. The mention of specific companies or products of manufacturers, whether or not these have been patented, does not imply that these have been endorsed or recommended by FAO in preference to others of a similar nature that are not mentioned. The views expressed in this information product are those of the authors and do not necessarily reflect the views of FAO. ISBN 978-92-5-106489-4 All rights reserved. -
High-Value Components and Bioactives from Sea Cucumbers for Functional Foods—A Review
Mar. Drugs 2011, 9, 1761-1805; doi:10.3390/md9101761 OPEN ACCESS Marine Drugs ISSN 1660-3397 www.mdpi.com/journal/marinedrugs Review High-Value Components and Bioactives from Sea Cucumbers for Functional Foods—A Review Sara Bordbar 1, Farooq Anwar 1,2 and Nazamid Saari 1,* 1 Faculty of Food Science and Technology, Universiti Putra Malaysia, Serdang, Selangor 43400, Malaysia; E-Mails: [email protected] (S.B.); [email protected] (F.A.) 2 Department of Chemistry and Biochemistry, University of Agriculture, Faisalabad 38040, Pakistan * Author to whom correspondence should be addressed; E-Mail: [email protected]; Tel.: +60-389-468-385; Fax: +60-389-423-552. Received: 3 August 2011; in revised form: 30 August 2011 / Accepted: 8 September 2011 / Published: 10 October 2011 Abstract: Sea cucumbers, belonging to the class Holothuroidea, are marine invertebrates, habitually found in the benthic areas and deep seas across the world. They have high commercial value coupled with increasing global production and trade. Sea cucumbers, informally named as bêche-de-mer, or gamat, have long been used for food and folk medicine in the communities of Asia and Middle East. Nutritionally, sea cucumbers have an impressive profile of valuable nutrients such as Vitamin A, Vitamin B1 (thiamine), Vitamin B2 (riboflavin), Vitamin B3 (niacin), and minerals, especially calcium, magnesium, iron and zinc. A number of unique biological and pharmacological activities including anti-angiogenic, anticancer, anticoagulant, anti-hypertension, anti-inflammatory, antimicrobial, antioxidant, antithrombotic, antitumor and wound healing have been ascribed to various species of sea cucumbers. Therapeutic properties and medicinal benefits of sea cucumbers can be linked to the presence of a wide array of bioactives especially triterpene glycosides (saponins), chondroitin sulfates, glycosaminoglycan (GAGs), sulfated polysaccharides, sterols (glycosides and sulfates), phenolics, cerberosides, lectins, peptides, glycoprotein, glycosphingolipids and essential fatty acids. -
Complete Genome Sequence of Acidimicrobium Ferrooxidans Type Strain (ICPT)
Lawrence Berkeley National Laboratory Lawrence Berkeley National Laboratory Title Complete genome sequence of Acidimicrobium ferrooxidans type strain (ICPT) Permalink https://escholarship.org/uc/item/4cd3q8tr Author Clum, Alicia Publication Date 2009-07-20 Peer reviewed eScholarship.org Powered by the California Digital Library University of California Standards in Genomic Sciences (2009) 1: 38-45 DOI:10.4056/sigs.1463 Complete genome sequence of Acidimicrobium ferrooxidans type strain (ICPT) Alicia Clum1, Matt Nolan1, Elke Lang2, Tijana Glavina Del Rio1, Hope Tice1, Alex Copeland1, Jan-Fang Cheng1, Susan Lucas1, Feng Chen1, David Bruce3, Lynne Goodwin3, Sam Pitluck1, Natalia Ivanova1, Konstantinos Mavromatis1 , Natalia Mikhailova1, Amrita Pati1, Amy Chen4, Krishna Palaniappan4, Markus Göker2, Stefan Spring2, Miriam Land5, Loren Hauser5, Yun- Juan Chang5, Cynthia C. Jeffries5, Patrick Chain1,6, Jim Bristow1, Jonathan A. Eisen1,7, Victor Markowitz4, Philip Hugenholtz1, Nikos C. Kyrpides1, Hans-Peter Klenk2, and Alla Lapidus1* 1 DOE Joint Genome Institute, Walnut Creek, California, USA 2 DSMZ - German Collection of Microorganisms and Cell Cultures GmbH, Braunschweig, Germany 3 Los Alamos National Laboratory, Bioscience Division, Los Alamos, New Mexico USA 4 Biological Data Management and Technology Center, Lawrence Berkeley National Labora- tory, Berkeley, California, USA 5 Oak Ridge National Laboratory, Oak Ridge, Tennessee, USA 6 Lawrence Livermore National Laboratory, Livermore, California, USA 7 University of California Davis Genome Center, Davis, California, USA *Corresponding author: Alla Lapidus Keywords: Moderate thermophile, ferrous-iron-oxidizing, acidophile, Acidomicrobiales. Acidimicrobium ferrooxidans (Clark and Norris 1996) is the sole and type species of the ge- nus, which until recently was the only genus within the actinobacterial family Acidimicrobia- ceae and in the order Acidomicrobiales. -
Sea Cucumber Fisheries in Rasa Island Wildlife Sanctuary, Narra, Palawan, Philippines Roger G
SPC Beche-de-mer Information Bulletin #37 – March 2017 9 Sea cucumber fisheries in Rasa Island Wildlife Sanctuary, Narra, Palawan, Philippines Roger G. Dolorosa,1* Claribel B. Salazar,1 Mary Tootchie V. Delfin,1 Joseph R. Paduga1 and Rodulf Anthony T. Balisco1 Abstract Sea cucumber fishing in Rasa Island Wildlife Sanctuary is an important source of livelihood among the coastal inhabitants of Narra Municipality, Palawan, Philippines. Sea cucumbers, however, are becoming overly exploited in most of their distribution range. Therefore, there is a need to determine the status of this fishery resource within the island to serve as basis for management interventions. Of the 24 species identi- fied within the sanctuary, 3 species (Actinopyga echinites, Holothuria scabra and Stichopus herrmanni) are listed as threatened by the International Union for Conservation of Nature. Only 8 species were encountered at the intertidal and shallow subtidal reefs, and only 20 species were identified by the respondents. The cur- rent number of species in the sanctuary represents about 69% of the 35 reported number of commercially important sea cucumber species in Palawan. The survey for abundance and catch-per-unit-effort in five stations within the sanctuary revealed an average density of 52.95 ind. ha-1. With an average catch-per- unit-effort of 1.79 kg person-1 h-1 and an average fishing time of 5 h, fishers could at least collect 8.95 kg per operation. The projected monthly earnings (PHP 1,600.00)2 from sea cucumber fishing is much lower than what is claimed (PHP 3,937.50–5,571.00) by the respondents whose fishing activities covered a much wider area and depth. -
Marine Cyanolichens from Different Littoral Zones Are
bioRxiv preprint doi: https://doi.org/10.1101/209320; this version posted February 6, 2018. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. 1 Marine cyanolichens from different littoral 2 zones are associated with distinct bacterial 3 communities 4 Nyree J. West*1, Delphine Parrot2†, Claire Fayet1, Martin Grube3, Sophie Tomasi2 5 and Marcelino T. Suzuki4 6 1 Sorbonne Universités, UPMC Univ Paris 06, CNRS, Observatoire Océanologique de Banyuls (OOB), 7 F-66650, Banyuls sur mer, France 8 2 UMR CNRS 6226, Institut des Sciences chimiques de Rennes, Equipe CORINT « Chimie Organique 9 et Interfaces », UFR Sciences Pharmaceutiques et Biologiques, Univ. Rennes 1, Université Bretagne 10 Loire, F-35043, Rennes, France 11 3 Institute of Plant Sciences, University of Graz, A-8010 Graz, Austria 12 4 Sorbonne Universités, UPMC Univ. Paris 06, CNRS, Laboratoire de Biodiversité et Biotechnologies 13 Microbiennes (LBBM), Observatoire Océanologique, F-66650, Banyuls sur mer, France 14 †Current address: GEOMAR Helmholtz Centre for Ocean Research Kiel, Research Unit Marine 15 Natural Products Chemistry, GEOMAR Centre for Marine Biotechnology, 24106 Kiel, Germany 16 *Corresponding author: 17 Observatoire Océanologique de Banyuls sur mer, F-66650 Banyuls sur mer, France 18 19 Tel: +33 (0)4 30 19 24 29, Fax: +33 (0)4 68 88 73 98 20 Email: [email protected] 21 1 bioRxiv preprint doi: https://doi.org/10.1101/209320; this version posted February 6, 2018.