Geological and Geo-Morphological Influences on Some Sea-Cumber
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SPC Beche-De-Mer Information Bulletin #39 – March 2019
ISSN 1025-4943 Issue 39 – March 2019 BECHE-DE-MER information bulletin v Inside this issue Editorial Towards producing a standard grade identification guide for bêche-de-mer in This issue of the Beche-de-mer Information Bulletin is well supplied with Solomon Islands 15 articles that address various aspects of the biology, fisheries and S. Lee et al. p. 3 aquaculture of sea cucumbers from three major oceans. An assessment of commercial sea cu- cumber populations in French Polynesia Lee and colleagues propose a procedure for writing guidelines for just after the 2012 moratorium the standard identification of beche-de-mer in Solomon Islands. S. Andréfouët et al. p. 8 Andréfouët and colleagues assess commercial sea cucumber Size at sexual maturity of the flower populations in French Polynesia and discuss several recommendations teatfish Holothuria (Microthele) sp. in the specific to the different archipelagos and islands, in the view of new Seychelles management decisions. Cahuzac and others studied the reproductive S. Cahuzac et al. p. 19 biology of Holothuria species on the Mahé and Amirantes plateaux Contribution to the knowledge of holo- in the Seychelles during the 2018 northwest monsoon season. thurian biodiversity at Reunion Island: Two previously unrecorded dendrochi- Bourjon and Quod provide a new contribution to the knowledge of rotid sea cucumbers species (Echinoder- holothurian biodiversity on La Réunion, with observations on two mata: Holothuroidea). species that are previously undescribed. Eeckhaut and colleagues P. Bourjon and J.-P. Quod p. 27 show that skin ulcerations of sea cucumbers in Madagascar are one Skin ulcerations in Holothuria scabra can symptom of different diseases induced by various abiotic or biotic be induced by various types of food agents. -
Yellow Coloured Mats from Lava Tubes of La Palma (Canary Islands, Spain
www.nature.com/scientificreports OPEN Yellow coloured mats from lava tubes of La Palma (Canary Islands, Spain) are dominated by Received: 27 July 2017 Accepted: 16 January 2018 metabolically active Actinobacteria Published: xx xx xxxx Jose L. Gonzalez-Pimentel1, Ana Z. Miller 1, Valme Jurado1, Leonila Laiz1, Manuel F. C. Pereira2 & Cesareo Saiz-Jimenez1 Microbial diversity in lava tubes from Canary Islands (Spain) has never been explored thus far ofering a unique opportunity to study subsurface microbiology. Abundant yellow coloured mats developing on coralloid speleothems in a lava tube from La Palma Islands were studied by next-generation sequencing and DNA/RNA clone library analyses for investigating both total and metabolically active bacteria. In addition, morphological and mineralogical characterization was performed by feld emission scanning electron microscopy (FESEM), micro-computed tomography, X-ray difraction and infrared spectroscopy to contextualize sequence data. This approach showed that the coralloid speleothems consist of banded siliceous stalactites composed of opal-A and hydrated halloysite. Analytical pyrolysis was also conducted to infer the possible origin of cave wall pigmentation, revealing that lignin degradation compounds can contribute to speleothem colour. Our RNA-based study showed for the frst time that members of the phylum Actinobacteria, with 55% of the clones belonging to Euzebyales order, were metabolically active components of yellow mats. In contrast, the DNA clone library revealed that around 45% of clones were afliated to Proteobacteria. Composition of microbial phyla obtained by NGS reinforced the DNA clone library data at the phylum level, in which Proteobacteria was the most abundant phylum followed by Actinobacteria. Microbial mats frequently coat extensive areas of walls and ceilings of karstic caves and lava tubes, usually devel- oping yellow, tan, orange, grey, pink and white-coloured bioflms1–6. -
Complete Genome Sequence of Acidimicrobium Ferrooxidans Type Strain (ICPT)
Lawrence Berkeley National Laboratory Lawrence Berkeley National Laboratory Title Complete genome sequence of Acidimicrobium ferrooxidans type strain (ICPT) Permalink https://escholarship.org/uc/item/4cd3q8tr Author Clum, Alicia Publication Date 2009-07-20 Peer reviewed eScholarship.org Powered by the California Digital Library University of California Standards in Genomic Sciences (2009) 1: 38-45 DOI:10.4056/sigs.1463 Complete genome sequence of Acidimicrobium ferrooxidans type strain (ICPT) Alicia Clum1, Matt Nolan1, Elke Lang2, Tijana Glavina Del Rio1, Hope Tice1, Alex Copeland1, Jan-Fang Cheng1, Susan Lucas1, Feng Chen1, David Bruce3, Lynne Goodwin3, Sam Pitluck1, Natalia Ivanova1, Konstantinos Mavromatis1 , Natalia Mikhailova1, Amrita Pati1, Amy Chen4, Krishna Palaniappan4, Markus Göker2, Stefan Spring2, Miriam Land5, Loren Hauser5, Yun- Juan Chang5, Cynthia C. Jeffries5, Patrick Chain1,6, Jim Bristow1, Jonathan A. Eisen1,7, Victor Markowitz4, Philip Hugenholtz1, Nikos C. Kyrpides1, Hans-Peter Klenk2, and Alla Lapidus1* 1 DOE Joint Genome Institute, Walnut Creek, California, USA 2 DSMZ - German Collection of Microorganisms and Cell Cultures GmbH, Braunschweig, Germany 3 Los Alamos National Laboratory, Bioscience Division, Los Alamos, New Mexico USA 4 Biological Data Management and Technology Center, Lawrence Berkeley National Labora- tory, Berkeley, California, USA 5 Oak Ridge National Laboratory, Oak Ridge, Tennessee, USA 6 Lawrence Livermore National Laboratory, Livermore, California, USA 7 University of California Davis Genome Center, Davis, California, USA *Corresponding author: Alla Lapidus Keywords: Moderate thermophile, ferrous-iron-oxidizing, acidophile, Acidomicrobiales. Acidimicrobium ferrooxidans (Clark and Norris 1996) is the sole and type species of the ge- nus, which until recently was the only genus within the actinobacterial family Acidimicrobia- ceae and in the order Acidomicrobiales. -
Marine Cyanolichens from Different Littoral Zones Are
bioRxiv preprint doi: https://doi.org/10.1101/209320; this version posted February 6, 2018. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. 1 Marine cyanolichens from different littoral 2 zones are associated with distinct bacterial 3 communities 4 Nyree J. West*1, Delphine Parrot2†, Claire Fayet1, Martin Grube3, Sophie Tomasi2 5 and Marcelino T. Suzuki4 6 1 Sorbonne Universités, UPMC Univ Paris 06, CNRS, Observatoire Océanologique de Banyuls (OOB), 7 F-66650, Banyuls sur mer, France 8 2 UMR CNRS 6226, Institut des Sciences chimiques de Rennes, Equipe CORINT « Chimie Organique 9 et Interfaces », UFR Sciences Pharmaceutiques et Biologiques, Univ. Rennes 1, Université Bretagne 10 Loire, F-35043, Rennes, France 11 3 Institute of Plant Sciences, University of Graz, A-8010 Graz, Austria 12 4 Sorbonne Universités, UPMC Univ. Paris 06, CNRS, Laboratoire de Biodiversité et Biotechnologies 13 Microbiennes (LBBM), Observatoire Océanologique, F-66650, Banyuls sur mer, France 14 †Current address: GEOMAR Helmholtz Centre for Ocean Research Kiel, Research Unit Marine 15 Natural Products Chemistry, GEOMAR Centre for Marine Biotechnology, 24106 Kiel, Germany 16 *Corresponding author: 17 Observatoire Océanologique de Banyuls sur mer, F-66650 Banyuls sur mer, France 18 19 Tel: +33 (0)4 30 19 24 29, Fax: +33 (0)4 68 88 73 98 20 Email: [email protected] 21 1 bioRxiv preprint doi: https://doi.org/10.1101/209320; this version posted February 6, 2018. -
SPC Beche-De-Mer Information Bulletin
Secretariat of the Pacific Community ISSN 1025-4943 Issue 34 – May 2014 BECHE-DE-MER information bulletin Inside this issue Editorial The IUCN Red List assessment of th aspidochirotid sea cucumbers and its The 34 issue of the Beche-de-mer Information Bulletin includes, as implications always, a considerable amount of information on the biology, ecology and C. Conand et al. p. 3 bio-management of sea cucumbers. The status of the sea cucumber fishery in Batiki District, Lomaiviti, Fiji In the first article, Chantal Conand and co-authors describe the process used W. Lalavanua, I. Tuinasavusavu and the results obtained in an assessment of sea cucumber species for the and P. Seru p. 8 International Union for Conservation of Nature (IUCN) Red List; 16 threatened species, out of 377 known aspidochirotids examined, are presented. An Indonesian sea cucumber fishing village: The case of Pulau Misa The second article comes from Fiji. Watisoni Lalavanua and colleagues P.G. Navarro et al. p. 14 undertook a sea cucumber assessment survey in Batiki District in October An assessment of holothurian diversity, 2012. The results indicate that the sea cucumber fishery there is under abundance and distribution in the shallow lagoons of Mauritius stress from overexploitation and requires effective management. K. Lampe-Ramdoo, R. Moothien Pillay Pablo Navarro and co-authors provide some information on beche-de- and C. Conand p. 17 mer activities at Pulau Misa, a small island in Indonesia’s Flores Sea. The Some data on the diversity and people from Pulau Misa carry out a semi-traditional sea cucumber fishery. -
Chemical Defense Mechanisms and Ecological Implications of Indo-Pacific Holothurians
molecules Article Chemical Defense Mechanisms and Ecological Implications of Indo-Pacific Holothurians Elham Kamyab 1,* , Sven Rohde 1 , Matthias Y. Kellermann 1 and Peter J. Schupp 1,2,* 1 Institute for Chemistry and Biology of the Marine Environment (ICBM), Carl-von-Ossietzky University Oldenburg, Schleusenstrasse 1, 26382 Wilhelmshaven, Germany; [email protected] (S.R.); [email protected] (M.Y.K.) 2 Helmholtz Institute for Functional Marine Biodiversity, University of Oldenburg, Ammerländer Heerstrasse 231, D-26129 Oldenburg, Germany * Correspondence: [email protected] (E.K.); [email protected] (P.J.S.); Tel.: +49-4421-944-100 (P.J.S.) Academic Editor: David Popovich Received: 14 August 2020; Accepted: 13 October 2020; Published: 19 October 2020 Abstract: Sea cucumbers are slow-moving organisms that use morphological, but also a diverse combination of chemical defenses to improve their overall fitness and chances of survival. Since chemical defense compounds are also of great pharmaceutical interest, we pinpoint the importance of biological screenings that are a relatively fast, informative and inexpensive way to identify the most bioactive organisms prior to further costly and elaborate pharmacological screenings. In this study, we investigated the presence and absence of chemical defenses of 14 different sea cucumber species from three families (Holothuriidae, Stichopodidae and Synaptidae) against ecological factors such as predation and pathogenic attacks. We used the different sea cucumber crude extracts as well as purified fractions and pure saponin compounds in a portfolio of ecological activity tests including fish feeding assays, cytotoxicity tests and antimicrobial assays against environmental pathogenic and non-pathogenic bacteria. -
Species Composition, Density and Distribution of Sea Cucumbers (Holothuroidea) at Arreceffi Island, Honda Bay, Palawan, Philippines Jean Beth S
SPC Beche-de-mer Information Bulletin #37 – March 2017 21 Species composition, density and distribution of sea cucumbers (Holothuroidea) at Arreceffi Island, Honda Bay, Palawan, Philippines Jean Beth S. Jontila,1* Rodulf Anthony T. Balisco1 and Glesselle T. Batin2 Abstract This study was conducted to determine the species composition, distribution, density and size structure of sea cucumbers at Arreceffi Island in Honda Bay, Palawan, Philippines. Three stations covering different habitats (intertidal flats, seagrass beds, and coral reefs) were surveyed during the day and night by walking, snorkeling and scuba diving. In total, 15 species in the families Holothuriidae (11 species), Stichopodidae (3 species) and Synaptidae (1 species) were recorded. Some rare Stichopus and high-value species were recorded along with other aggregating species of the family Holothuriidae. Density generally ranged from 0.3 to 19.0 ind. 100 m-2, and greatly varied depending on habitat. Introduction remains unregulated. Initial assessments in Pala- wan have revealed that areas open to harvesting Sea cucumbers are among the heavily exploited have very little populations remaining, or popula- invertebrates in the Philippines although their col- tions have been depleted (Jontila et al. 2013). High- lection is unregulated due to poor implementation value species were seldom encountered in shallow of pertinent laws. Information on sea cucumber sites of Bataraza, Quezon, El Nido and Roxas in populations is also very limited. Most of the earlier Palawan except around Arreceffi Island in Honda works focused on taxonomy and species inventories Bay, Puerto Princesa City, where viable populations (Domantay 1934, 1960; Reyes-Leonardo 1984; Tan were noted (Jontila et al. -
Research Article Variation in Righting Times of Holothuria Atra, Stichopus
Hindawi Journal of Marine Biology Volume 2019, Article ID 6179705, 6 pages https://doi.org/10.1155/2019/6179705 Research Article Variation in Righting Times of Holothuria atra, Stichopus chloronotus, and Holothuria edulis in Response to Increased Seawater Temperatures on Heron Reef in the Southern GBR Elizabeth Buccheri ,1 Matthias W. Foellmer,1,2 Beth A. Christensen ,1,3 Paul Langis,4 Stefani Ritter,1 Esther Wolf,5 and Aaren S. Freeman 1,2 1 Environmental Studies Program, Adelphi University, New York, USA 2Department of Biology, Adelphi University, New York, USA 3Department of Environmental Science, Rowan University, New Jersey, USA 4Department of Exercise Science, Health Studies, Physical Education and Sport Management, Adelphi University, New York, USA 5Department of Art and Art History, Adelphi University, New York, USA Correspondence should be addressed to Aaren S. Freeman; [email protected] Received 13 August 2018; Accepted 6 March 2019; Published 2 April 2019 Academic Editor: Robert A. Patzner Copyright © 2019 Elizabeth Buccheri et al. Tis is an open access article distributed under the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. Sea cucumbers can mitigate some impacts of climate change through digestion of benthic sands and production of calcium carbonate. Te projected ecological benefts of sea cucumbers in warmer, more acidic oceans are contingent on the capacities of individuals to acclimate and populations to adapt to climatic changes. Te goal of this experiment was to evaluate the degree to which warming waters would impact three abundant species of sea cucumbers on the Heron Reef in Queensland, Australia. -
By Ms. Ludivina L. Labe 7 Over-Harvesting of Shallow-Water Holothuroids, Commonly Known As Sea Cucumbers, Throughout Their Geogr
Sea cucumber fisheries, utilization and trade in the Philippines Item Type book_section Authors Labe, Ludivina L. Publisher Secretariat, Southeast Asian Fisheries Development Center Download date 04/10/2021 07:27:57 Link to Item http://hdl.handle.net/1834/40976 Southeast Asian Fisheries Development Center SEA CUCUMBER FISHERIES, UTILIZATION AND TRADE IN THE PHILIPPINES By Ms. Ludivina L. Labe 7 1. Introduction Over-harvesting of shallow-water holothuroids, commonly known as sea cucumbers, throughout their geographical range has become an international concern. The alarming volume of extraction and trade in the high value processed meat, known by the trade names “trepang” and “beche-de- mer” came to the attention of international bodies such as the United Nations Food and Agriculture Organization (FAO) and the Convention on International Trade in Endangered Species of Wild Fauna and Flora(CITES). The aforesaid entities initiated separate fora that provided the avenues to discuss the varied and country-specific issues on sea cucumber fisheries and trade. To wit: the FAO’s Advances in Sea Cucumber Aquaculture and Management Workshop (ASCAM) in 2003 and the CITES International Workshop for the Conservation of Sea Cucumbers in the Families Holothuriidae and Stichopodidae in 2004. The CITES has been looking into listing the species in its Appendices according to the category of threat on the survival of Figure 1. Traditional sea cucumber fishing grounds wild populations. Recently, the International Union for the Conservation of Nature (IUCN) conducted initiative of the Council underscored its stand that the “Red List Categories” training for Filipino fisheries management should be under the purview taxonomists and marine biologists. -
Variation in Righting Times of Holothuria Atra, Stichopus Chloronotus, And
Rowan University Rowan Digital Works School of Earth & Environment Faculty Scholarship School of Earth & Environment 1-1-2019 Variation in righting times of holothuria atra, stichopus chloronotus, and holothuria edulis in response to increased seawater temperatures on heron reef in the southern GBR Elizabeth Buccheri Adelphi University Matthias W. Foellmer Adelphi University Beth A. Christensen Rowan University Paul Langi Adelphi University Stefani Ritter Adelphi University See next page for additional authors Follow this and additional works at: https://rdw.rowan.edu/see_facpub Part of the Oceanography Commons Recommended Citation Buccheri, E., Foellmer, M. W., Christensen, B. A., et al. (2019). Variation in Righting Times of Holothuria atra, Stichopus chloronotus, and Holothuria edulis in Response to Increased Seawater Temperatures on Heron Reef in the Southern GBR. Journal of Marine Biology, Volume 2019, Article ID 6179705. https://doi.org/10.1155/2019/6179705. This Article is brought to you for free and open access by the School of Earth & Environment at Rowan Digital Works. It has been accepted for inclusion in School of Earth & Environment Faculty Scholarship by an authorized administrator of Rowan Digital Works. Authors Elizabeth Buccheri, Matthias W. Foellmer, Beth A. Christensen, Paul Langi, Stefani Ritter, Esther Wolf, and Aaren S. Freeman This article is available at Rowan Digital Works: https://rdw.rowan.edu/see_facpub/28 Hindawi Journal of Marine Biology Volume 2019, Article ID 6179705, 6 pages https://doi.org/10.1155/2019/6179705 Research Article Variation in Righting Times of Holothuria atra, Stichopus chloronotus, and Holothuria edulis in Response to Increased Seawater Temperatures on Heron Reef in the Southern GBR Elizabeth Buccheri ,1 Matthias W. -
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Iranian Journal of Fisheries Sciences 17(2) 413-426 2018 DOI: 10.22092/IJFS.2018.116076 Antioxidant and cytotoxic activities of metabolites produced by a new marine Streptomyces sp. isolated from the sea cucumber Holothuria leucospilota Gozari M.1,2; Bahador N.2*; Jassbi A.R.3; Mortazavi M.S.4; Eftekhar E.5 Received: January 2017 Accepted: March 2018 Abstract Marine microorganisms are important sources for novel natural products. Hence, the aim of this study was to introduce marine microorganisms with the capability of producing antioxidant and cytotoxic metabolites. For this purpose, ten live sea cucumbers (Holothuria leucospilota) were collected from Larak Island, Persian Gulf. Then, their intestine contents were serially diluted and treated by heating (55°C). 100 µL of treated samples were inoculated on starch casein nitrate agar medium, which is supplemented with nalidixic acid and cycloheximide. The plates were incubated at 28 °C for 4 weeks and the colonies were purified. The antioxidant activity of extracted metabolites from the isolated actinobacteria was evaluated using DPPH (1,1-diphenyl- 2-picrylhydrazyl) radical scavenging activity assay and the cytotoxic activity was screened by Brine-Shrimp micro well cytotoxicity method. In addition, the cytotoxic effect was evaluated against HCT 116 and SW 480 cell lines by MTT cell proliferation assay. A new strain of marine actinobacterium represented maximum antioxidant and cytotoxic activity among 17 actinobacterial isolates. The ethyl acetate culture extract of -1 the isolate scavenged DPPH radicals with IC50 value of 211.2 µg mL . In addition, the extract exhibited high toxicity against HCT 116 and SW 480 tumor cell lines with IC50 values of 26.48 and 18.53 µg mL-1 respectively. -
Analysis of Optimal Habitat for Captive Release of the Sea Cucumber Holothuria Scabra
Vol. 588: 85–100, 2018 MARINE ECOLOGY PROGRESS SERIES Published February 8 https://doi.org/10.3354/meps12444 Mar Ecol Prog Ser OPENPEN ACCESSCCESS Analysis of optimal habitat for captive release of the sea cucumber Holothuria scabra Daniela M. Ceccarelli1, Murray Logan2, Steven W. Purcell1,3,* 1National Marine Science Centre, Southern Cross University, PO Box 4321, Coffs Harbour, NSW 2450, Australia 2Australian Institute of Marine Science, PMB No. 3, Townsville MC, QLD 4810, Australia 3WorldFish, PO Box 500, Penang 10670, Malaysia ABSTRACT: The success of marine stocking programs hinges on releasing hatchery-produced juvenile animals into the optimal marine habitat. This study sought to identify optimal microhabi- tat features of coastal seagrass meadows for juvenile sea cucumbers Holothuria scabra, a species cultured widely for stock restoration, sea ranching and sea farming. Groups of 25 juveniles were released into 30 replicate 1 m2 open sea pens embedded into sediments in a coastal bay of New Caledonia at sites with varying biotic and physical features. Survival after 8 to 10 d ranged from 0 to 100% and averaged 77%. Boosted regression tree analyses found that different variables affected survival, growth and burying behaviour. Survival was significantly higher at shallow depths with intermediate seagrass cover (~42%). Growth rate was significantly higher at compa- rable intermediate seagrass cover (~34%) and for smaller juveniles, presumably displaying com- pensatory growth. Burying frequency of juveniles was largely explained by habitat variables, notably a high organic carbon content of sediments and shallow seawater depths. Juveniles sur- vived better where they buried more frequently, providing empirical evidence of a predator- avoidance mechanism.