Reef Life of Cozumel
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Pacific Plate Biogeography, with Special Reference to Shorefishes
Pacific Plate Biogeography, with Special Reference to Shorefishes VICTOR G. SPRINGER m SMITHSONIAN CONTRIBUTIONS TO ZOOLOGY • NUMBER 367 SERIES PUBLICATIONS OF THE SMITHSONIAN INSTITUTION Emphasis upon publication as a means of "diffusing knowledge" was expressed by the first Secretary of the Smithsonian. In his formal plan for the Institution, Joseph Henry outlined a program that included the following statement: "It is proposed to publish a series of reports, giving an account of the new discoveries in science, and of the changes made from year to year in all branches of knowledge." This theme of basic research has been adhered to through the years by thousands of titles issued in series publications under the Smithsonian imprint, commencing with Smithsonian Contributions to Knowledge in 1848 and continuing with the following active series: Smithsonian Contributions to Anthropology Smithsonian Contributions to Astrophysics Smithsonian Contributions to Botany Smithsonian Contributions to the Earth Sciences Smithsonian Contributions to the Marine Sciences Smithsonian Contributions to Paleobiology Smithsonian Contributions to Zoo/ogy Smithsonian Studies in Air and Space Smithsonian Studies in History and Technology In these series, the Institution publishes small papers and full-scale monographs that report the research and collections of its various museums and bureaux or of professional colleagues in the world cf science and scholarship. The publications are distributed by mailing lists to libraries, universities, and similar institutions throughout the world. Papers or monographs submitted for series publication are received by the Smithsonian Institution Press, subject to its own review for format and style, only through departments of the various Smithsonian museums or bureaux, where the manuscripts are given substantive review. -
Cairns Regional Council Water and Waste Report for Mulgrave River Aquifer Feasibility Study Flora and Fauna Report
Cairns Regional Council Water and Waste Report for Mulgrave River Aquifer Feasibility Study Flora and Fauna Report November 2009 Contents 1. Introduction 1 1.1 Background 1 1.2 Scope 1 1.3 Project Study Area 2 2. Methodology 4 2.1 Background and Approach 4 2.2 Demarcation of the Aquifer Study Area 4 2.3 Field Investigation of Proposed Bore Hole Sites 5 2.4 Overview of Ecological Values Descriptions 5 2.5 PER Guidelines 5 2.6 Desktop and Database Assessments 7 3. Database Searches and Survey Results 11 3.1 Information Sources 11 3.2 Species of National Environmental Significance 11 3.3 Queensland Species of Conservation Significance 18 3.4 Pest Species 22 3.5 Vegetation Communities 24 3.6 Regional Ecosystem Types and Integrity 28 3.7 Aquatic Values 31 3.8 World Heritage Values 53 3.9 Results of Field Investigation of Proposed Bore Hole Sites 54 4. References 61 Table Index Table 1: Summary of NES Matters Protected under Part 3 of the EPBC Act 5 Table 2 Summary of World Heritage Values within/adjacent Aquifer Area of Influence 6 Table 3: Species of NES Identified as Occurring within the Study Area 11 Table 4: Summary of Regional Ecosystems and Groundwater Dependencies 26 42/15610/100421 Mulgrave River Aquifer Feasibility Study Flora and Fauna Report Table 5: Freshwater Fish Species in the Mulgrave River 36 Table 6: Estuarine Fish Species in the Mulgrave River 50 Table 7: Description of potential borehole field in Aloomba as of 20th August, 2009. 55 Figure Index Figure 1: Regional Ecosystem Conservation Status and Protected Species Observation 21 Figure 2: Vegetation Communities and Groundwater Dependencies 30 Figure 3: Locations of Study Sites 54 Appendices A Database Searches 42/15610/100421 Mulgrave River Aquifer Feasibility Study Flora and Fauna Report 1. -
Order GASTEROSTEIFORMES PEGASIDAE Eurypegasus Draconis
click for previous page 2262 Bony Fishes Order GASTEROSTEIFORMES PEGASIDAE Seamoths (seadragons) by T.W. Pietsch and W.A. Palsson iagnostic characters: Small fishes (to 18 cm total length); body depressed, completely encased in Dfused dermal plates; tail encircled by 8 to 14 laterally articulating, or fused, bony rings. Nasal bones elongate, fused, forming a rostrum; mouth inferior. Gill opening restricted to a small hole on dorsolat- eral surface behind head. Spinous dorsal fin absent; soft dorsal and anal fins each with 5 rays, placed posteriorly on body. Caudal fin with 8 unbranched rays. Pectoral fins large, wing-like, inserted horizon- tally, composed of 9 to 19 unbranched, soft or spinous-soft rays; pectoral-fin rays interconnected by broad, transparent membranes. Pelvic fins thoracic, tentacle-like,withI spine and 2 or 3 unbranched soft rays. Colour: in life highly variable, apparently capable of rapid colour change to match substrata; head and body light to dark brown, olive-brown, reddish brown, or almost black, with dorsal and lateral surfaces usually darker than ventral surface; dorsal and lateral body surface often with fine, dark brown reticulations or mottled lines, sometimes with irregular white or yellow blotches; tail rings often encircled with dark brown bands; pectoral fins with broad white outer margin and small brown spots forming irregular, longitudinal bands; unpaired fins with small brown spots in irregular rows. dorsal view lateral view Habitat, biology, and fisheries: Benthic, found on sand, gravel, shell-rubble, or muddy bottoms. Collected incidentally by seine, trawl, dredge, or shrimp nets; postlarvae have been taken at surface lights at night. -
The Seahorse Genome and the Evolution of Its Specialized
OPEN ARTICLE doi:10.1038/nature20595 The seahorse genome and the evolution of its specialized morphology Qiang Lin1*§, Shaohua Fan2†*, Yanhong Zhang1*, Meng Xu3*, Huixian Zhang1,4*, Yulan Yang3*, Alison P. Lee4†, Joost M. Woltering2, Vydianathan Ravi4, Helen M. Gunter2†, Wei Luo1, Zexia Gao5, Zhi Wei Lim4†, Geng Qin1,6, Ralf F. Schneider2, Xin Wang1,6, Peiwen Xiong2, Gang Li1, Kai Wang7, Jiumeng Min3, Chi Zhang3, Ying Qiu8, Jie Bai8, Weiming He3, Chao Bian8, Xinhui Zhang8, Dai Shan3, Hongyue Qu1,6, Ying Sun8, Qiang Gao3, Liangmin Huang1,6, Qiong Shi1,8§, Axel Meyer2§ & Byrappa Venkatesh4,9§ Seahorses have a specialized morphology that includes a toothless tubular mouth, a body covered with bony plates, a male brood pouch, and the absence of caudal and pelvic fins. Here we report the sequencing and de novo assembly of the genome of the tiger tail seahorse, Hippocampus comes. Comparative genomic analysis identifies higher protein and nucleotide evolutionary rates in H. comes compared with other teleost fish genomes. We identified an astacin metalloprotease gene family that has undergone expansion and is highly expressed in the male brood pouch. We also find that the H. comes genome lacks enamel matrix protein-coding proline/glutamine-rich secretory calcium-binding phosphoprotein genes, which might have led to the loss of mineralized teeth. tbx4, a regulator of hindlimb development, is also not found in H. comes genome. Knockout of tbx4 in zebrafish showed a ‘pelvic fin-loss’ phenotype similar to that of seahorses. Members of the teleost family Syngnathidae (seahorses, pipefishes de novo. The H. comes genome assembly is of high quality, as > 99% and seadragons) (Extended Data Fig. -
The Genome of the Gulf Pipefish Enables Understanding of Evolutionary Innovations C
Small et al. Genome Biology (2016) 17:258 DOI 10.1186/s13059-016-1126-6 RESEARCH Open Access The genome of the Gulf pipefish enables understanding of evolutionary innovations C. M. Small1†, S. Bassham1†, J. Catchen1,2†, A. Amores3, A. M. Fuiten1, R. S. Brown1,4, A. G. Jones5 and W. A. Cresko1* Abstract Background: Evolutionary origins of derived morphologies ultimately stem from changes in protein structure, gene regulation, and gene content. A well-assembled, annotated reference genome is a central resource for pursuing these molecular phenomena underlying phenotypic evolution. We explored the genome of the Gulf pipefish (Syngnathus scovelli), which belongs to family Syngnathidae (pipefishes, seahorses, and seadragons). These fishes have dramatically derived bodies and a remarkable novelty among vertebrates, the male brood pouch. Results: We produce a reference genome, condensed into chromosomes, for the Gulf pipefish. Gene losses and other changes have occurred in pipefish hox and dlx clusters and in the tbx and pitx gene families, candidate mechanisms for the evolution of syngnathid traits, including an elongated axis and the loss of ribs, pelvic fins, and teeth. We measure gene expression changes in pregnant versus non-pregnant brood pouch tissue and characterize the genomic organization of duplicated metalloprotease genes (patristacins) recruited into the function of this novel structure. Phylogenetic inference using ultraconserved sequences provides an alternative hypothesis for the relationship between orders Syngnathiformes and Scombriformes. Comparisons of chromosome structure among percomorphs show that chromosome number in a pipefish ancestor became reduced via chromosomal fusions. Conclusions: The collected findings from this first syngnathid reference genome open a window into the genomic underpinnings of highly derived morphologies, demonstrating that de novo production of high quality and useful reference genomes is within reach of even small research groups. -
Reef Fishes of the Bird's Head Peninsula, West
Check List 5(3): 587–628, 2009. ISSN: 1809-127X LISTS OF SPECIES Reef fishes of the Bird’s Head Peninsula, West Papua, Indonesia Gerald R. Allen 1 Mark V. Erdmann 2 1 Department of Aquatic Zoology, Western Australian Museum. Locked Bag 49, Welshpool DC, Perth, Western Australia 6986. E-mail: [email protected] 2 Conservation International Indonesia Marine Program. Jl. Dr. Muwardi No. 17, Renon, Denpasar 80235 Indonesia. Abstract A checklist of shallow (to 60 m depth) reef fishes is provided for the Bird’s Head Peninsula region of West Papua, Indonesia. The area, which occupies the extreme western end of New Guinea, contains the world’s most diverse assemblage of coral reef fishes. The current checklist, which includes both historical records and recent survey results, includes 1,511 species in 451 genera and 111 families. Respective species totals for the three main coral reef areas – Raja Ampat Islands, Fakfak-Kaimana coast, and Cenderawasih Bay – are 1320, 995, and 877. In addition to its extraordinary species diversity, the region exhibits a remarkable level of endemism considering its relatively small area. A total of 26 species in 14 families are currently considered to be confined to the region. Introduction and finally a complex geologic past highlighted The region consisting of eastern Indonesia, East by shifting island arcs, oceanic plate collisions, Timor, Sabah, Philippines, Papua New Guinea, and widely fluctuating sea levels (Polhemus and the Solomon Islands is the global centre of 2007). reef fish diversity (Allen 2008). Approximately 2,460 species or 60 percent of the entire reef fish The Bird’s Head Peninsula and surrounding fauna of the Indo-West Pacific inhabits this waters has attracted the attention of naturalists and region, which is commonly referred to as the scientists ever since it was first visited by Coral Triangle (CT). -
“The Secret Lives of Seahorses” Exhibit Press Kit Click on Headings Below to Go Directly to a Specific Page of the Press Kit
“The Secret Lives of Seahorses” Exhibit Press Kit Click on headings below to go directly to a specific page of the press kit. 1. Main Exhibit News Release 2. Exhibit Fact Sheet 3. Exhibit Gallery Tour 4. Exhibit Animals 5. Seahorse Conservation News Release NEWS RELEASE FOR IMMEDIATE RELEASE For information contact: March 23, 2009 Angela Hains: (831) 647-6804; [email protected] Karen Jeffries: (831) 644-7548; [email protected] Ken Peterson: (831) 648-4922; [email protected] DURING ITS SILVER ANNIVERSARY YEAR, AQUARIUM UNVEILS “THE SECRET LIVES OF SEAHORSES” ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ New special exhibition offers an intimate look at these fascinating, fragile fishes Seahorses have been celebrated in art, literature and mythology for centuries, so you’d think we know a lot about them. In “The Secret Lives of Seahorses,” the Monterey Bay Aquarium’s new special exhibition, you’ll discover that nothing could be further from the truth. Beginning April 6, more than 15 species of seahorses, sea dragons and pipefish will beckon visitors into the elusive world of these charismatic creatures. The Secret Lives of Seahorses highlights the varied habitats in which seahorses and their relatives live, and shares important stories about the threats they face in the wild. “Seahorses are wonderful ambassadors for ocean conservation because they live in the most endangered habitats in the world – coral reefs, sea grass beds and mangrove forests,” said Ava Ferguson, senior exhibit developer for The Secret Lives of Seahorses. “When you save a seahorse, you also save some of Earth’s most precious marine habitats.” Through wrought-iron gates, visitors will enter the first gallery, “Seahorses and Kin,” and meet the seahorse family: fishes that have fused jaws and bony plates in place of the scales normally associated with fish. -
The Global Trade in Marine Ornamental Species
From Ocean to Aquarium The global trade in marine ornamental species Colette Wabnitz, Michelle Taylor, Edmund Green and Tries Razak From Ocean to Aquarium The global trade in marine ornamental species Colette Wabnitz, Michelle Taylor, Edmund Green and Tries Razak ACKNOWLEDGEMENTS UNEP World Conservation This report would not have been The authors would like to thank Helen Monitoring Centre possible without the participation of Corrigan for her help with the analyses 219 Huntingdon Road many colleagues from the Marine of CITES data, and Sarah Ferriss for Cambridge CB3 0DL, UK Aquarium Council, particularly assisting in assembling information Tel: +44 (0) 1223 277314 Aquilino A. Alvarez, Paul Holthus and and analysing Annex D and GMAD data Fax: +44 (0) 1223 277136 Peter Scott, and all trading companies on Hippocampus spp. We are grateful E-mail: [email protected] who made data available to us for to Neville Ash for reviewing and editing Website: www.unep-wcmc.org inclusion into GMAD. The kind earlier versions of the manuscript. Director: Mark Collins assistance of Akbar, John Brandt, Thanks also for additional John Caldwell, Lucy Conway, Emily comments to Katharina Fabricius, THE UNEP WORLD CONSERVATION Corcoran, Keith Davenport, John Daphné Fautin, Bert Hoeksema, Caroline MONITORING CENTRE is the biodiversity Dawes, MM Faugère et Gavand, Cédric Raymakers and Charles Veron; for assessment and policy implemen- Genevois, Thomas Jung, Peter Karn, providing reprints, to Alan Friedlander, tation arm of the United Nations Firoze Nathani, Manfred Menzel, Julie Hawkins, Sherry Larkin and Tom Environment Programme (UNEP), the Davide di Mohtarami, Edward Molou, Ogawa; and for providing the picture on world’s foremost intergovernmental environmental organization. -
Marine Protected Species Identification Guide
Department of Primary Industries and Regional Development Marine protected species identification guide June 2021 Fisheries Occasional Publication No. 129, June 2021. Prepared by K. Travaille and M. Hourston Cover: Hawksbill turtle (Eretmochelys imbricata). Photo: Matthew Pember. Illustrations © R.Swainston/www.anima.net.au Bird images donated by Important disclaimer The Chief Executive Officer of the Department of Primary Industries and Regional Development and the State of Western Australia accept no liability whatsoever by reason of negligence or otherwise arising from the use or release of this information or any part of it. Department of Primary Industries and Regional Development Gordon Stephenson House 140 William Street PERTH WA 6000 Telephone: (08) 6551 4444 Website: dpird.wa.gov.au ABN: 18 951 343 745 ISSN: 1447 - 2058 (Print) ISBN: 978-1-877098-22-2 (Print) ISSN: 2206 - 0928 (Online) ISBN: 978-1-877098-23-9 (Online) Copyright © State of Western Australia (Department of Primary Industries and Regional Development), 2021. ii Marine protected species ID guide Contents About this guide �������������������������������������������������������������������������������������������1 Protected species legislation and international agreements 3 Reporting interactions ���������������������������������������������������������������������������������4 Marine mammals �����������������������������������������������������������������������������������������5 Relative size of cetaceans �������������������������������������������������������������������������5 -
Assessment of the Flame Angelfish (Centropyge Loriculus) As a Model Species in Studies on Egg and Larval Quality in Marine Fishes Chatham K
The University of Maine DigitalCommons@UMaine Electronic Theses and Dissertations Fogler Library 8-2007 Assessment of the Flame Angelfish (Centropyge loriculus) as a Model Species in Studies on Egg and Larval Quality in Marine Fishes Chatham K. Callan Follow this and additional works at: http://digitalcommons.library.umaine.edu/etd Part of the Aquaculture and Fisheries Commons, and the Oceanography Commons Recommended Citation Callan, Chatham K., "Assessment of the Flame Angelfish (Centropyge loriculus) as a Model Species in Studies on Egg and Larval Quality in Marine Fishes" (2007). Electronic Theses and Dissertations. 126. http://digitalcommons.library.umaine.edu/etd/126 This Open-Access Dissertation is brought to you for free and open access by DigitalCommons@UMaine. It has been accepted for inclusion in Electronic Theses and Dissertations by an authorized administrator of DigitalCommons@UMaine. ASSESSMENT OF THE FLAME ANGELFISH (Centropyge loriculus) AS A MODEL SPECIES IN STUDIES ON EGG AND LARVAL QUALITY IN MARINE FISHES By Chatham K. Callan B.S. Fairleigh Dickinson University, 1997 M.S. University of Maine, 2000 A THESIS Submitted in Partial Fulfillment of the Requirements for the Degree of Doctor of Philosophy (in Marine Biology) The Graduate School The University of Maine August, 2007 Advisory Committee: David W. Townsend, Professor of Oceanography, Advisor Linda Kling, Associate Professor of Aquaculture and Fish Nutrition, Co-Advisor Denise Skonberg, Associate Professor of Food Science Mary Tyler, Professor of Biological Science Christopher Brown, Professor of Marine Science (Florida International University) LIBRARY RIGHTS STATEMENT In presenting this thesis in partial fulfillment of the requirements for an advanced degree at The University of Maine, I agree that the Library shall make it freely available for inspection. -
Oral Presentations
Oral Presentations Do river-reservoir interfaces serve as surrogate nurseries for floodplain-dependent riverine fishes? Matthew R. Acre*1,2, Timothy B. Grabowski2,3 , Nathan G. Smith4 1Department of Natural Resources Management, Texas Tech University 2Texas Cooperative Fish and Wildlife Resource Unit, Texas Tech University 3U.S. Geological Survey 4Texas Parks and Wildlife, Inland Fisheries Division Keywords: river-reservoir interface, larval fishes, assemblages Anthropogenic modification to riverine systems has reduced access to important off-channel nursery habitats. Some species utilize these floodplain habitats during early life history. The river-reservoir interface (RRI), a transitional zone between lentic and lotic habitats, may provide surrogate nursery habitats for these species. We sampled ichthyoplankton assemblages in riverine and RRI off-channel and main channel habitats in the Trinity River system of east Texas to compare species composition and abundance in these different habitat types and evaluate the influence of abiotic and physicochemical characteristics on ichthyoplankton assemblages. Ichthyoplankton was sampled using light traps and paired push nets deployed off jet-powered kayaks during February-July 2013 and 2014. Over 30,000 larval fishes were collected, representing 11 taxa. A few taxa were dominant at all sites, however, less common ichthyofauna such as moronids, centrarchids, and Freshwater Drum were captured more frequently in RRI habitats. In general, larval fish abundance, species richness, and species diversity, were greater in the RRI off-channel habitats than other habitat types. The duration and size of connection to the main channel best explained species richness, diversity, and overall abundance in RRI off-channel habitats. Our results suggest RRI habitat may serve as a surrogate nursery for some species. -
Development of Larval Fish Rearing Techniques and Nutrient Requirements for the Green Mandarin, Synchiropus Splendidus: a Popular Marine Ornamental Fish
ResearchOnline@JCU This file is part of the following reference: Shao, Luchang (2016) Development of larval fish rearing techniques and nutrient requirements for the green mandarin, Synchiropus splendidus: a popular marine ornamental fish. PhD thesis, James Cook University. Access to this file is available from: http://researchonline.jcu.edu.au/47308/ The author has certified to JCU that they have made a reasonable effort to gain permission and acknowledge the owner of any third party copyright material included in this document. If you believe that this is not the case, please contact [email protected] and quote http://researchonline.jcu.edu.au/47308/ Development of larval fish rearing techniques and nutrient requirement for the green mandarin, Synchiropus splendidus: a popular marine ornamental fish Thesis submitted by Luchang Shao (MSc) in September 2016 For the degree of Doctor of Philosophy In the College of Marine and Environmental Science James Cook University Declaration on Ethics The research presented and reported in this thesis was conducted within the guidelines for research ethics outlined in the National Statement on Ethics Conduct in Research Involving Human (1999), the Joint NHMRC/AVCC Statement and Guidelines on Research Practice (1997), the James Cook University Policy on Experimentation Ethics Standard Practices and Guidelines (2001), and the James Cook University Statement and Guidelines on Research Practice (2001). The proposed research methodology received clearance from the James Cook University Experimentation Ethics Review Committee. Approval numbers: A1851; Principal investigator: Luchang Shao; Finish date: September 30, 2015 i Statement of contribution of others Financial support for this study was provided by Graduate Research School of James Cook University, JCU Postgraduate Research Scholarship.