Chapter 22 Carbohydrates
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Structures of Monosaccharides Hemiacetals
Structures of Monosaccharides Hemiacetals • Although, the open chain structures of monosaccharides are consistent with the chemistry of carbohydrates, in reality they are oversimplifications of the true structure of carbohydrates. • It is common knowledge that aldehydes react with alcohols to form hemiacetals. In cases where a molecule is a hydroxyaldehyde such as 4- hydroxybutanal or 5-hydroxypentanal, cyclic hemiacetals result. 9:47 AM 1 Structures of Monosaccharides Hemiacetals • Aldoses often contain an aldehyde group and several hydroxyl groups as part of the same molecule; they have a greater tendency of forming cyclic hemiacetals. In fact, in aqueous solution carbohydrates exist almost exclusively in the ring-closed form At equilibrium, the linear aldehyde or ketone structure represents less than 1% of the sugar present. • Five and six-membered rings are thermodynamically more stable than their corresponding four and seven membered rings, since they are less strained. • Five- (furanoses) and six-membered cyclic hemiacetals (pyranoses) are often more stable than their open-chain forms. In particular the six-membered rings which can adopt a chair conformation are 9:47 AM 2 essentially free from all types of strains. Structures of Monosaccharides Evidence for Existence of Monosacharides as Hemiacetals What physical, chemical and spectroscopic evidence support the existence of monosaccharide sugars as cyclic hemi-acetals. (a) Two anomers of glucose capable of existing independently with different physical (melting points and specific optical rotation) and chemical properties can be obtained by recrystallization. (b) the 1H-NMR and IR-spectra of solutions of pure sugars show the presence of mixtures (anomeric hemiacetals) and absence of an aldehydic peak is a sufficient indicator that the sugars exist in some other form other than the open-chain form. -
Pentose PO4 Pathway, Fructose, Galactose Metabolism.Pptx
Pentose PO4 pathway, Fructose, galactose metabolism The Entner Doudoroff pathway begins with hexokinase producing Glucose 6 PO4 , but produce only one ATP. This pathway prevalent in anaerobes such as Pseudomonas, they doe not have a Phosphofructokinase. The pentose phosphate pathway (also called the phosphogluconate pathway and the hexose monophosphate shunt) is a biochemical pathway parallel to glycolysis that generates NADPH and pentoses. While it does involve oxidation of glucose, its primary role is anabolic rather than catabolic. There are two distinct phases in the pathway. The first is the oxidative phase, in which NADPH is generated, and the second is the non-oxidative synthesis of 5-carbon sugars. For most organisms, the pentose phosphate pathway takes place in the cytosol. For each mole of glucose 6 PO4 metabolized to ribulose 5 PO4, 2 moles of NADPH are produced. 6-Phosphogluconate dh is not only an oxidation step but it’s also a decarboxylation reaction. The primary results of the pathway are: The generation of reducing equivalents, in the form of NADPH, used in reductive biosynthesis reactions within cells (e.g. fatty acid synthesis). Production of ribose-5-phosphate (R5P), used in the synthesis of nucleotides and nucleic acids. Production of erythrose-4-phosphate (E4P), used in the synthesis of aromatic amino acids. Transketolase and transaldolase reactions are similar in that they transfer between carbon chains, transketolases 2 carbon units or transaldolases 3 carbon units. Regulation; Glucose-6-phosphate dehydrogenase is the rate- controlling enzyme of this pathway. It is allosterically stimulated by NADP+. The ratio of NADPH:NADP+ is normally about 100:1 in liver cytosol. -
Redox and Complexation Chemistry of the Crvi/Crv–D-Galacturonic Acid System
Redox and complexation chemistry of the CrVI/CrV–D-galacturonic acid system Juan C. González,a Verónica Daier,a Silvia García,a Bernard A. Goodman,b Ana M. Atria,c Luis F. Sala*a and Sandra Signorella*a a Departamento de Química, Facultad de Ciencias Bioquímicas y Farmacéuticas, UNR, Suipacha 531, 2000, Rosario, Argentina. E-mail: [email protected]; [email protected] b Scottish Crop Research Institute, Invergowrie, Dundee, Scotland, UK DD2 5DA c Facultad de Ciencias Químicas y Farmacéuticas and CIMAT, Universidad de Chile, Casilla 233, Santiago, Chile The oxidation of D-galacturonic acid by CrVI yields the aldaric acid and CrIII as final products when a 30-times or higher excess of the uronic acid over CrVI is used. The redox reaction involves the formation of intermediate CrIV and CrV species, with CrVI and the two intermediate species reacting with galacturonic acid at comparable rates. The rate of disappearance of CrVI, CrIV and CrV depends on pH and [substrate], and the slow reaction step of the CrVI to CrIII conversion depends on the reaction conditions. The EPR spectra show that five-coordinate oxo–CrV bischelates are formed at pH ≤ 5 with the uronic acid bound to CrV through the carboxylate and the -OH group of the furanose form or the ring oxygen of the pyranose form. Six-coordinated oxo–CrV monochelates are observed as minor species in addition to the major five- V VI coordinated oxo–Cr bischelates only for galacturonic acid : Cr ratio ≤ 10 : 1, in 0.25–0.50 M HClO4. At pH 7.5 the EPR spectra show the formation of a CrV complex where the vic-diol groups of Galur participate in the bonding to CrV. -
Biochemistry Entry of Fructose and Galactose
Paper : 04 Metabolism of carbohydrates Module : 06 Entry of Fructose and Galactose Dr. Vijaya Khader Dr. MC Varadaraj Principal Investigator Dr.S.K.Khare,Professor IIT Delhi. Paper Coordinator Dr. Ramesh Kothari,Professor UGC-CAS Department of Biosciences Saurashtra University, Rajkot-5, Gujarat-INDIA Dr. S. P. Singh, Professor Content Reviewer UGC-CAS Department of Biosciences Saurashtra University, Rajkot-5, Gujarat-INDIA Dr. Charmy Kothari, Assistant Professor Content Writer Department of Biotechnology Christ College, Affiliated to Saurashtra University, Rajkot-5, Gujarat-INDIA 1 Metabolism of Carbohydrates Biochemistry Entry of Fructose and Galactose Description of Module Subject Name Biochemistry Paper Name 04 Metabolism of Carbohydrates Module Name/Title 06 Entry of Fructose and Galactose 2 Metabolism of Carbohydrates Biochemistry Entry of Fructose and Galactose METABOLISM OF FRUCTOSE Objectives 1. To study the major pathway of fructose metabolism 2. To study specialized pathways of fructose metabolism 3. To study metabolism of galactose 4. To study disorders of galactose metabolism 3 Metabolism of Carbohydrates Biochemistry Entry of Fructose and Galactose Introduction Sucrose disaccharide contains glucose and fructose as monomers. Sucrose can be utilized as a major source of energy. Sucrose includes sugar beets, sugar cane, sorghum, maple sugar pineapple, ripe fruits and honey Corn syrup is recognized as high fructose corn syrup which gives the impression that it is very rich in fructose content but the difference between the fructose content in sucrose and high fructose corn syrup is only 5-10%. HFCS is rich in fructose because the sucrose extracted from the corn syrup is treated with the enzyme that converts some glucose in fructose which makes it more sweet. -
The Fischer Proof of the Structure of (+)-Glucose Started in 1888, 12
The Fischer proof of the structure of (+)-glucose Started in 1888, 12 years after the proposal that carbon was tetrahedral, and thus had stereoisomers. Tools: - melting points - optical rotation (determine whether a molecule is optically active) - chemical reactions Fischer knew: - (+)-glucose is an aldohexose. - Therefore, there are 4 stereocenters and 24 = 16 stereoisomers (8 D-sugars and 8 L-sugars) - At this time could not determine the actual configuration (D or L) of sugars - Fischer arbitrarily assigned D-glyceraldehyde the following structure. CHO H OH CH2OH - In 1951 Fischer was shown to have guessed correctly. CO2H CHO H OH HO H HO H CH2OH CO2H L-Tartaric acid L-glyceraldehyde Which of the 8 D-aldohexoses is (+)-glucose??? 1) Oxidation of (+)-glucose with nitric acid gives an aldaric acid, glucaric acid, that is optically active. Therefore (+)-glucose cannot have structures 1 or 7, which would give optically inactive aldaric acids. HNO3 (+)-glucose Glucaric acid Optically active CHO CO2H H OH H OH 1 H OH HNO3 H OH Mirror plane H OH H OH H OH H OH Since these aldaric CH2OH CO2H acids have mirror planes they are meso structures. CHO CO2H They are not optically H OH H OH active HO H HNO3 HO H 7 Mirror plane HO H HO H H OH H OH CH2OH CO2H 2) Ruff degradation of (+)-glucose gives (-)-arabinose. Oxidation of (-)-arabinose with nitric acid gives arabanaric acid, which is optically active. Therefore, (-)-arabinose cannot have structures 9 or 11, which would give optically inactive aldaric acids. If arabinose cannot be 9 or 11, (+)-glucose cannot be 2 (1 was already eliminated), 5 or 6, which would give 9 or 11 in a Ruff degradation. -
Carbohydrates: Structure and Function
CARBOHYDRATES: STRUCTURE AND FUNCTION Color index: . Very important . Extra Information. “ STOP SAYING I WISH, START SAYING I WILL” 435 Biochemistry Team *هذا العمل ﻻ يغني عن المصدر المذاكرة الرئيسي • The structure of carbohydrates of physiological significance. • The main role of carbohydrates in providing and storing of energy. • The structure and function of glycosaminoglycans. OBJECTIVES: 435 Biochemistry Team extra information that might help you 1-synovial fluid: - It is a viscous, non-Newtonian fluid found in the cavities of synovial joints. - the principal role of synovial fluid is to reduce friction between the articular cartilage of synovial joints during movement O 2- aldehyde = terminal carbonyl group (RCHO) R H 3- ketone = carbonyl group within (inside) the compound (RCOR’) 435 Biochemistry Team the most abundant organic molecules in nature (CH2O)n Carbohydrates Formula *hydrate of carbon* Function 1-provides important part of energy Diseases caused by disorders of in diet . 2-Acts as the storage form of energy carbohydrate metabolism in the body 3-structural component of cell membrane. 1-Diabetesmellitus. 2-Galactosemia. 3-Glycogen storage disease. 4-Lactoseintolerance. 435 Biochemistry Team Classification of carbohydrates monosaccharides disaccharides oligosaccharides polysaccharides simple sugar Two monosaccharides 3-10 sugar units units more than 10 sugar units Joining of 2 monosaccharides No. of carbon atoms Type of carbonyl by O-glycosidic bond: they contain group they contain - Maltose (α-1, 4)= glucose + glucose -Sucrose (α-1,2)= glucose + fructose - Lactose (β-1,4)= glucose+ galactose Homopolysaccharides Heteropolysaccharides Ketone or aldehyde Homo= same type of sugars Hetero= different types Ketose aldose of sugars branched unBranched -Example: - Contains: - Contains: Examples: aldehyde group glycosaminoglycans ketone group. -
Aldehydes Can React with Alcohols to Form Hemiacetals
340 14 . Nucleophilic substitution at C=O with loss of carbonyl oxygen You have, in fact, already met some reactions in which the carbonyl oxygen atom can be lost, but you probably didn’t notice at the time. The equilibrium between an aldehyde or ketone and its hydrate (p. 000) is one such reaction. O HO OH H2O + R1 R2 R1 R2 When the hydrate reverts to starting materials, either of its two oxygen atoms must leave: one OPh came from the water and one from the carbonyl group, so 50% of the time the oxygen atom that belonged to the carbonyl group will be lost. Usually, this is of no consequence, but it can be useful. O For example, in 1968 some chemists studying the reactions that take place inside mass spectrometers needed to label the carbonyl oxygen atom of this ketone with the isotope 18 O. 16 18 By stirring the ‘normal’ O compound with a large excess of isotopically labelled water, H 2 O, for a few hours in the presence of a drop of acid they were able to make the required labelled com- í In Chapter 13 we saw this way of pound. Without the acid catalyst, the exchange is very slow. Acid catalysis speeds the reaction up by making a reaction go faster by raising making the carbonyl group more electrophilic so that equilibrium is reached more quickly. The the energy of the starting material. We 18 also saw that the position of an equilibrium is controlled by mass action— O is in large excess. -
Educational Research Applications Abebe M, Et Al
Educational Research Applications Abebe M, et al. Educ Res Appl 5: 175. Review Article DOI: 10.29011/2575-7032.100175 Teaching Students Synthesizing Molecules Mimicking an Existing Drug against Covid-19 Moges Abebe1*, Lashan Eloise Knowles1, Bisrat Hailemeskel2 1Department of Biological and Physical Sciences, Saint Augustine University, Raleigh, NC, USA 2Department of Clinical & Administrative Pharmacy Sciences, College of Pharmacy, Howard University, NW Washington, DC, USA *Corresponding author: Moges Abebe, Department of Biological and Physical Sciences, Saint Augustine University, Raleigh, NC 27610, NC, USA Citation: Abebe M, Knowles LE, Hailemeskel B (2020) Teaching Students Synthesizing Molecules Mimicking an Existing Drug against Covid-19. Educ Res Appl 5: 175. DOI: 10.29011/2575-7032.100175 Received Date: 26 May 2020; Accepted Date: 01 June, 2020; Published Date: 06 June, 2020 Abstract End of semester organic chemistry course projects are valuable learning assessment tools while giving students a creative opportunity and sparking interest for further research investigations. The purpose of this year’s project was to teach students how to synthesize a molecule that potentially mimics an existing drug that works against the COVID-19. The available drugs chosen for the project are those that are proposed to work either by prohibiting the easy entry of the virus into respiratory tissues or those who deprive the virus’s ability to reproduce once they enter the cell. An investigative search in historical literature and the current conditions of the virus enabled students to create a unique and innovative product that requires a cumulative learned knowledge. History has shown that when a new virus becomes pandemic it takes time for researchers to create a drug, test the results, and gets approved by the Food and Drug Administration (FDA) for public availability. -
4202-B: Nucleic Acids and Carbohydrates L-4 1 Deoxy Sugars
4202-B: Nucleic acids and Carbohydrates L-4 Deoxy sugars In these sugars one of the OH groups is replaced by a hydrogen. 2-Deoxyribose (oxygen missing at C-2 position) is an important example of a deoxy sugar. It is important component of DNA, and lack of C-2 hydroxyl provide additional stability to it as compared to RNA as no intramolecular nuclephilic attack on phosphate chain can occur. Amino sugars In amino sugars one of the OH groups is replaced by an amino group. These molecules allow proteins and sugars to combine and produce structures of remarkable variety and beauty. The most common amino sugars are N-acetyl glucosamine and N-acetyl galactosamine, which differ only in stereochemistry. The hard outer skeletons of insects and crustaceans contain chitin, a polymer very like cellulose but made of N-acetyl glucosamine instead of glucose itself. It coils up in a similar way and provides the toughness of crab shells and beetle cases. Some important antibiotics contain amino sugars. For example, the three subunits of the antibiotic gentamicin are deoxyamino sugars (the middle subunit is missing the ring oxygen). N-Acetyl glucosamine N-Acetyl galactosamine Gentamicin, an antibiotic Cell membranes must not be so impermeable as they need to allow the passage of water and complex molecules. These membranes contain glycoproteins—proteins with amino sugar residues attached to asparagine, serine, or threonine in the protein. The attachment is at the anomeric position so that these compounds are O- or N-glycosides of the amino sugars. The structure below shows N-acetyl galactosamine attached to an asparagine residue as an N-glycoside. -
Properties and Kinetic Analysis of UDP-Glucose Dehydrogenase from Group a Streptococci IRREVERSIBLE INHIBITION by UDP-CHLOROACETOL*
THE JOURNAL OF BIOLOGICAL CHEMISTRY Vol. 272, No. 6, Issue of February 7, pp. 3416–3422, 1997 © 1997 by The American Society for Biochemistry and Molecular Biology, Inc. Printed in U.S.A. Properties and Kinetic Analysis of UDP-glucose Dehydrogenase from Group A Streptococci IRREVERSIBLE INHIBITION BY UDP-CHLOROACETOL* (Received for publication, September 19, 1996, and in revised form, November 6, 1996) Robert E. Campbell‡§, Rafael F. Sala‡, Ivo van de Rijn¶, and Martin E. Tanner‡i From the ‡Department of Chemistry, University of British Columbia, Vancouver, British Columbia V6T 1Z1, Canada and ¶Wake Forest University Medical Center, Winston-Salem, North Carolina 27157 UDP-glucuronic acid is used by many pathogenic bac- the capsule enables the bacteria to evade the host’s immune teria in the construction of an antiphagocytic capsule system (7, 8). Group A and C streptococci are mammalian that is required for virulence. The enzyme UDP-glucose pathogens that use UDPGDH in the synthesis of a capsule dehydrogenase catalyzes the NAD1-dependent 2-fold ox- composed of hyaluronic acid (a polysaccharide consisting of idation of UDP-glucose and provides a source of the alternating glucuronic acid and N-acetylglucosamine residues) acid. In the present study the recombinant dehydrogen- (9, 10). Many of the known strains of Streptococcus pneumoniae ase from group A streptococci has been purified and also use UDP-glucuronic acid in the construction of their po- found to be active as a monomer. The enzyme contains lysaccharide capsule (11), and it has recently been shown that no chromophoric cofactors, and its activity is unaffected UDPGDH is required for capsule production in S. -
Part 1 in Our Series of Carbohydrate Lectures. in This Section, You Will Learn About Monosaccharide Structure
Welcome to Part 1 in our series of Carbohydrate lectures. In this section, you will learn about monosaccharide structure. The building blocks of larger carbohydrate polymers. 1 First, let’s review why learning about carbohydrates is important. Carbohydrates are used by biological systems as fuels and energy resources. Carbohydrates typically provide quick energy and are one of the primary energy storage forms in animals. Carbohydrates also provide the precursors to other major macromolecules within the body, including the deoxyribose and ribose required for nucleic acid biosynthesis. Carbohydrates can also provide structural support and cushioning/shock absorption, as well as cell‐cell communication, identification, and signaling. 2 Carbohydrates, as their name implies, are water hydrates of carbon, and they all have the same basic core formula (CH2O)n and are always found in the ratio of 1 carbon to 2 hydrogens to 1 oxygen (1:2:1) making them easy to identify from their molecular formula. 3 Carbohydrates can be divided into subcategories based on their complexity. The simplest carbohydrates are the monosaccharides which are the simple sugars required for the biosynthesis of all the other carbohydrate types. Disaccharides consist of two monosaccharides that have been joined together by a covalent bond called the glycosidic bond. Oligosaccharides are polymers that consist of a few monosaccharides covalently linked together, and Polysaccharides are large polymers that contain hundreds to thousands of monosaccharide units all joined together by glycosidic bonds. The remainder of this lecture will focus on monosaccharides 4 Monosaccharides all have alcohol functional groups associated with them. In addition they also have one additional functional group, either an aldehyde or a ketone. -
Structures of Monosaccharides Hemiacetals
Disaccharides 10:51 AM 1 Disaccharides Definition • Disaccharides are carbohydrates consisting of two monosaccharide units linked via a glycosidic bond. Non-reducing disaccharide (1,1'-Glycosidic linkage) OH HO OH O HO O OH O OH OH HO OH HO O O HO OH + HO OH Glycosidic bond OH OH HO OH HO OH 6' 6 O O Reducing end 5' 1' 4 5 HO 4' O OH 3' 2' 3 2 1 HO OH HO OH Glycone Aglycone Reducing disaccharide (1,4'-Glycosidic linkage) • These disaccharides may be reducing or non-reducing sugars depending on the regiochemistry of the glycosidic 10:51 AM linkage between the two monosaccharides. 2 Nomenclature of Disaccharides • Since disaccharides are glycosides with two monosaccharide units linked through a glycosidic bond, their nomenclature requires the formulation of priority rules to identify which of the two monosaccharides of a disaccharide provides the parent name of the disaccharide and which one will be considered the substituent. • The nomenclature of disaccharides is based on the following considerations: i. Disaccharides with a free hemiacetal group (Reducing disaccharide) ii. Disaccharides without a free hemiacetal group (Non- Reducing Disaccharide) 10:51 AM 3 Nomenclature of Reducing Disaccharides • A disaccharide in which one glycosyl unit appears to have replaced the hydrogen atom of a hydroxyl group of the other is named as a glycosylglycose. The locants of the glycosidic linkage and the anomeric descriptor(s) must be given in the full name. • The parent sugar residue in such a reducing disaccharide is chosen on the basis of the following criteria: • The parent sugar residue is the one that includes the functional group most preferred by general principles of organic nomenclature.