Preliminary Data on the Composition and Spatial Distribution Patterns Of
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National Monitoring Program for Biodiversity and Non-Indigenous Species in Egypt
UNITED NATIONS ENVIRONMENT PROGRAM MEDITERRANEAN ACTION PLAN REGIONAL ACTIVITY CENTRE FOR SPECIALLY PROTECTED AREAS National monitoring program for biodiversity and non-indigenous species in Egypt PROF. MOUSTAFA M. FOUDA April 2017 1 Study required and financed by: Regional Activity Centre for Specially Protected Areas Boulevard du Leader Yasser Arafat BP 337 1080 Tunis Cedex – Tunisie Responsible of the study: Mehdi Aissi, EcApMEDII Programme officer In charge of the study: Prof. Moustafa M. Fouda Mr. Mohamed Said Abdelwarith Mr. Mahmoud Fawzy Kamel Ministry of Environment, Egyptian Environmental Affairs Agency (EEAA) With the participation of: Name, qualification and original institution of all the participants in the study (field mission or participation of national institutions) 2 TABLE OF CONTENTS page Acknowledgements 4 Preamble 5 Chapter 1: Introduction 9 Chapter 2: Institutional and regulatory aspects 40 Chapter 3: Scientific Aspects 49 Chapter 4: Development of monitoring program 59 Chapter 5: Existing Monitoring Program in Egypt 91 1. Monitoring program for habitat mapping 103 2. Marine MAMMALS monitoring program 109 3. Marine Turtles Monitoring Program 115 4. Monitoring Program for Seabirds 118 5. Non-Indigenous Species Monitoring Program 123 Chapter 6: Implementation / Operational Plan 131 Selected References 133 Annexes 143 3 AKNOWLEGEMENTS We would like to thank RAC/ SPA and EU for providing financial and technical assistances to prepare this monitoring programme. The preparation of this programme was the result of several contacts and interviews with many stakeholders from Government, research institutions, NGOs and fishermen. The author would like to express thanks to all for their support. In addition; we would like to acknowledge all participants who attended the workshop and represented the following institutions: 1. -
The Gut Microbiome of the Sea Urchin, Lytechinus Variegatus, from Its Natural Habitat Demonstrates Selective Attributes of Micro
FEMS Microbiology Ecology, 92, 2016, fiw146 doi: 10.1093/femsec/fiw146 Advance Access Publication Date: 1 July 2016 Research Article RESEARCH ARTICLE The gut microbiome of the sea urchin, Lytechinus variegatus, from its natural habitat demonstrates selective attributes of microbial taxa and predictive metabolic profiles Joseph A. Hakim1,†, Hyunmin Koo1,†, Ranjit Kumar2, Elliot J. Lefkowitz2,3, Casey D. Morrow4, Mickie L. Powell1, Stephen A. Watts1,∗ and Asim K. Bej1,∗ 1Department of Biology, University of Alabama at Birmingham, 1300 University Blvd, Birmingham, AL 35294, USA, 2Center for Clinical and Translational Sciences, University of Alabama at Birmingham, Birmingham, AL 35294, USA, 3Department of Microbiology, University of Alabama at Birmingham, Birmingham, AL 35294, USA and 4Department of Cell, Developmental and Integrative Biology, University of Alabama at Birmingham, 1918 University Blvd., Birmingham, AL 35294, USA ∗Corresponding authors: Department of Biology, University of Alabama at Birmingham, 1300 University Blvd, CH464, Birmingham, AL 35294-1170, USA. Tel: +1-(205)-934-8308; Fax: +1-(205)-975-6097; E-mail: [email protected]; [email protected] †These authors contributed equally to this work. One sentence summary: This study describes the distribution of microbiota, and their predicted functional attributes, in the gut ecosystem of sea urchin, Lytechinus variegatus, from its natural habitat of Gulf of Mexico. Editor: Julian Marchesi ABSTRACT In this paper, we describe the microbial composition and their predictive metabolic profile in the sea urchin Lytechinus variegatus gut ecosystem along with samples from its habitat by using NextGen amplicon sequencing and downstream bioinformatics analyses. The microbial communities of the gut tissue revealed a near-exclusive abundance of Campylobacteraceae, whereas the pharynx tissue consisted of Tenericutes, followed by Gamma-, Alpha- and Epsilonproteobacteria at approximately equal capacities. -
Tool Use by Four Species of Indo-Pacific Sea Urchins Glyn Barrett1,2, Dominic Revell1, Lucy Harding1, Ian Mills1, Axelle Jorcin1, Klaus M
bioRxiv preprint doi: https://doi.org/10.1101/347914; this version posted June 15, 2018. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC 4.0 International license. Tool use by four species of Indo-Pacific sea urchins Glyn Barrett1,2, Dominic Revell1, Lucy Harding1, Ian Mills1, Axelle Jorcin1, Klaus M. Stiefel1,3,4* 1. People and the Sea, Malapascua Island, Daanbantayan, Cebu, Philippines 2. School of Biological Sciences, University of Reading, UK. 3. Neurolinx Research Institute, La Jolla, CA, USA 4. Marine Science Institute, University of the Philippines, Dilliman, Quezon City, Philippines. *Corresponding author, [email protected] Abstract We compared the covering behavior of four sea urchin species, Tripneustes gratilla, Pseudoboletia maculata, Toxopneutes pileolus, and Salmacis sphaeroides found in the waters of Malapascua Island, Cebu Province and Bolinao, Panagsinan Province, Philippines. Specifically, we measured the amount and type of covering material on each urchin, and, in several cases, the recovery of debris cover after stripping the animal of its cover. We found that Tripneustes gratilla and Salmacis sphaeroides have a higher preference for plant material, especially sea-grass, compared to Pseudoboletia maculata and Toxopneutes pileolus, which prefer to cover themselves with coral rubble and other calcified material. Only for Toxopneutes pileolus did we find a decrease in cover with depth, confirming previous work that the covering behavior serves UV protection. We found no dependence of particle size on either species or urchin size, but we observed that larger urchins carried more and heavier debris. -
Protein and Energy Digestibility and Gonad Development of the European Sea Urchin Paracentrotus Lividus (Lamarck) Fed Algal and Prepared Diets During Spring and Fall
UC Davis UC Davis Previously Published Works Title Protein and energy digestibility and gonad development of the European sea urchin Paracentrotus lividus (Lamarck) fed algal and prepared diets during spring and fall Permalink https://escholarship.org/uc/item/2q5151zv Journal Aquaculture Research, 36 Author Schlosser, Susan Publication Date 2005 Peer reviewed eScholarship.org Powered by the California Digital Library University of California Aquaculture Research, 2005, 36, 972^982 doi:10.1111/j.1365-2109.2005.01306.x Protein and energy digestibility and gonad development of the European sea urchin Paracentrotus lividus (Lamarck) fed algal and prepared diets during spring and fall Susan C Schlosser1, Ingrid Lupatsch2, John M Lawrence3, Addison L Lawrence4 & Muki Shpigel2 1California Sea Grant Extension Program, Eureka, CA, USA 2National Center for Mariculture, Israel Oceanographic and Limnological Research, Eilat, Israel 3Department of Biology,University of South Florida,Tampa, FL, USA 4Texas A&M Shrimp Mariculture Project, Port Aransas,TX, USA Correspondence: S C Schlosser, California Sea Grant Extension Program, 2 Commercial St., Ste. 4, Eureka, CA 95501, USA. E-mail: [email protected] Abstract from the higher dietary energy content of the pre- pared diet. Protein and energy are two of the main limiting fac- tors for sea urchin growth. However, the requirement Key words: Paracentrotus lividus, sea urchin, of daily protein and energy to maximize gonadal pro- gonad, protein, energy,diet duction is still unknown. Paracentrotus lividus were fed three experimental diets: Ulva lactuca, Gracilaria conferta and a prepared diet for 2 months in the fall of 1999 and spring of 2000. Sea urchins from a Introduction laboratory-cultured population of equal age, weight and test diameter were used. -
Spatial Distribution of Two Maternal Messengers in Paracentrotus
Proc. Nati. Acad. Sci. USA Vol. 91, pp. 5622-5626, June 1994 Developmental Biology Spatial distribution of two maternal messengers in Paracentrotus lividus during oogenesis and embryogenesis (sea urchin/in situ hybridization/mRNA localIzation/cel surface proteins/proteilocalizain) M. Di CARLO*t, D. P. ROMANCINO*t, G. MONTANA*, AND G. GHERSI* *Istituto di Biologia dello Sviluppo, Consiglio Nazionale delle Ricerche, 90123 Palermo, Italy; and *Dipartimento di Biologia Cellulare e deilo Sviluppo, 90123 Palermo, Italy Communicated by A. A. Moscona, February 28, 1994 (receivedfor review October 22, 1993) ABSTRACT We demonstrated that two mRNAs that are structures; while observation indicated the presence of some synthesized during the vitellogenic period ofoogenesis and that asymmetry along the animal/vegetal axis of the unfertilized code for cell surface proteins are asymmetrically distributed in sea urchin egg, no satisfactory explanation for this asymme- the unfertilized egg of Paracentrotus lividus. At fertilization, try was provided, except for the suggestion of a double these RNAs rapidly localize in the cortical zone at the animal gradient proposed in 1928 by Runnstrom (10, 11). There was pole of the egg. They are then detected in the mesomeres and no evidence of a differential RNA localization in echinoderm the macromeres, but not in the micromeres, and thereafter are eggs, as has been demonstrated in Xenopus and Drosophila found in the ectoderm but not in the vegetal plate, mesenchyme eggs. cells, or early intestine. They disappear in late gastrula. The We report here that two maternal mRNAs, bepi and bep4, proteins synthesized by these mRNAs show the same territorial both of 1.4 kb, are asymmetrically distributed in the unfer- location during the period examined here, which included the tilized egg of Paracentrotus lividus. -
Sea Urchin <I>(Paracentrotus Lividus)
CryoLetters 35 (6), 482-494 (2014) © CryoLetters, [email protected] SEA URCHIN (PARACENTROTUS LIVIDUS) CRYOPRESERVED EMBRYOS SURVIVAL AND GROWTH: EFFECTS OF CRYOPRESERVATION PARAMETERS AND REPRODUCTIVE SEASONALITY E. Paredes1* and J. Bellas2 1Departamento de Ecoloxía e Bioloxía Animal, Universidade de Vigo, Estrada Colexio Universitario s/n, 36310 Vigo, Galicia, Spain. 2Instituto Español de Oceanografía, Centro Oceanográfico de Vigo, Cabo Estai – Canido, 36200 Vigo, Galicia, Spain *Corresponding author email: [email protected] Abstract BACKGROUND: The cryopreservation of embryos can be a powerful biotechnological tool to supply all year-round biological material for sea urchin aquaculture production. This study investigates different methodological and biological factors that may affect the result of the cryopreservation process of sea urchin (Paracentrotus lividus) embryos. Our data indicate that neither embryo density nor the use of different cryopreservation containers presented effect on the cryopreservation outcome. Contrary to other marine invertebrates, for sea urchin embryo cryopreservation ultrapure water cannot be used as CPA solvent, yielding zero survival. After studying the reproductive parameters along the reproductive season, we found a positive correlation between both male and female Condition Index (C.I.), and between the oocyte weight and C.I. Both the histology study of female gonads and the C.I. variation, suggest that the sea urchin natural spawning period in the Ría de Vigo occurs between June and July. -
Sea Urchin Aquaculture
American Fisheries Society Symposium 46:179–208, 2005 © 2005 by the American Fisheries Society Sea Urchin Aquaculture SUSAN C. MCBRIDE1 University of California Sea Grant Extension Program, 2 Commercial Street, Suite 4, Eureka, California 95501, USA Introduction and History South America. The correct color, texture, size, and taste are factors essential for successful sea The demand for fish and other aquatic prod- urchin aquaculture. There are many reasons to ucts has increased worldwide. In many cases, develop sea urchin aquaculture. Primary natural fisheries are overexploited and unable among these is broadening the base of aquac- to satisfy the expanding market. Considerable ulture, supplying new products to growing efforts to develop marine aquaculture, particu- markets, and providing employment opportu- larly for high value products, are encouraged nities. Development of sea urchin aquaculture and supported by many countries. Sea urchins, has been characterized by enhancement of wild found throughout all oceans and latitudes, are populations followed by research on their such a group. After World War II, the value of growth, nutrition, reproduction, and suitable sea urchin products increased in Japan. When culture systems. Japan’s sea urchin supply did not meet domes- Sea urchin aquaculture first began in Ja- tic needs, fisheries developed in North America, pan in 1968 and continues to be an important where sea urchins had previously been eradi- part of an integrated national program to de- cated to protect large kelp beds and lobster fish- velop food resources from the sea (Mottet 1980; eries (Kato and Schroeter 1985; Hart and Takagi 1986; Saito 1992b). Democratic, institu- Sheibling 1988). -
Phd Lamprianidou Fani 2
DEVELOPMENT OF A MODEL FOR EVALUATING AND OPTIMIZING THE PERFORMANCE OF INTEGRATED MULTITROPHIC AQUACULTURE (IMTA) SYSTEMS A THESIS SUBMITTED TO THE UNIVERSITY OF STIRLING FOR THE DEGREE OF DOCTOR OF PHILOSOPHY by FANI LAMPRIANIDOU UNIVERSITY OF STIRLING, INSTITUTE OF AQUACULTURE NOVEMBER 2015 In loving memory of Herta 2 ABSTRACT Earth’s population is expected to reach 9 billion by 2050. Ensuring food security for the growing world population is one of today’s society’s major challenges and responsibilities. Aquatic products have the potential to contribute significantly in the growing population’s dietary requirements. Since increasing the pressure on most natural fish stocks is now widely agreed not to be an option, the aquaculture sector needs to grow. The challenge is to increase aquaculture production without depleting natural resources or damaging the environment but also in a financially sustainable way. Integrated Multitrophic Aquaculture (IMTA) is one method of sustainable aquatic production. Integrating bioremediatory organisms that extract particulate organic matter or dissolved inorganic nutrients with monocultures of fed species has the potential of reducing the particulate and soluble waste loads from effluents, whilst producing a low-input protein source that may also increase the farm income. IMTA is a viable solution for mitigating the environmental impact of waste released from fish farms. The fish waste is exploited as a food source for lower trophic, extractive organisms giving an added value to the investment in feed. Studies up to now have shown that under experimental conditions as well as in small-scale commercial studies, various filter-feeding, deposit-feeding and grazing species can ingest fish waste particles. -
Genomics of the Globally Distributed Echinoid Genus Tripneustes
GENOMICS OF THE GLOBALLY DISTRIBUTED ECHINOID GENUS Tripneustes A DISSERTATION SUBMITTED TO THE GRADUATE DIVISION OF THE UNIVERSITY OF HAWAI‘I AT MANOA¯ IN PARTIAL FULFILLMENT OF THE REQUIREMENTS FOR THE DEGREE OF DOCTOR OF PHILOSOPHY IN ZOOLOGY (ECOLOGY,EVOLUTION,&CONSERVATION BIOLOGY) May 2018 BY Áki Jarl LÁRUSON DISSERTATION COMMITTEE: Floyd A. Reed, Chairperson Robert C. Thomson Robert J. Toonen Daniel Rubinoff David B. Carlon Keywords: Marine Invertebrate, Phylogenomics, Transcriptomics, Population Genomics © Copyright 2018 – Áki Jarl Láruson All rights reserved i DEDICATION I dedicate this dissertation to my grandfather, Marteinn Jónsson (née Donald L. Martin). ii Acknowledgements Every step towards the completion of this dissertation has been made possible by more people than I could possibly recount. I am profoundly grateful to my teachers, in all their forms, and especially my undergraduate advisor, Dr. Sean Craig, of Humboldt State Uni- versity, for all the opportunities he afforded me in experiencing biological research. My dissertation committee deserves special mention, for perpetually affording me pressing encouragement, but also providing an attitude of support and positivity that has been formative beyond measure. My mentor and committee chair, Dr. Floyd Reed, has pro- vided me with perspectives, insights, and advise that I will carry with me for the rest of my life. My family, although far from the tropical shores of Hawai‘i, have been with me in so many ways throughout this endeavor, and I am so profoundly grateful for their love and support. iii Abstract Understanding genomic divergence can be a key to understanding population dynam- ics. As global climate change continues it becomes especially important to understand how and why populations form and dissipate, and how they may be better protected. -
Metallothionein Gene Family in the Sea Urchin Paracentrotus Lividus: Gene Structure, Differential Expression and Phylogenetic Analysis
International Journal of Molecular Sciences Article Metallothionein Gene Family in the Sea Urchin Paracentrotus lividus: Gene Structure, Differential Expression and Phylogenetic Analysis Maria Antonietta Ragusa 1,*, Aldo Nicosia 2, Salvatore Costa 1, Angela Cuttitta 2 and Fabrizio Gianguzza 1 1 Department of Biological, Chemical, and Pharmaceutical Sciences and Technologies, University of Palermo, 90128 Palermo, Italy; [email protected] (S.C.); [email protected] (F.G.) 2 Laboratory of Molecular Ecology and Biotechnology, National Research Council-Institute for Marine and Coastal Environment (IAMC-CNR) Detached Unit of Capo Granitola, Torretta Granitola, 91021 Trapani, Italy; [email protected] (A.N.); [email protected] (A.C.) * Correspondence: [email protected]; Tel.: +39-091-238-97401 Academic Editor: Masatoshi Maki Received: 6 March 2017; Accepted: 5 April 2017; Published: 12 April 2017 Abstract: Metallothioneins (MT) are small and cysteine-rich proteins that bind metal ions such as zinc, copper, cadmium, and nickel. In order to shed some light on MT gene structure and evolution, we cloned seven Paracentrotus lividus MT genes, comparing them to Echinodermata and Chordata genes. Moreover, we performed a phylogenetic analysis of 32 MTs from different classes of echinoderms and 13 MTs from the most ancient chordates, highlighting the relationships between them. Since MTs have multiple roles in the cells, we performed RT-qPCR and in situ hybridization experiments to understand better MT functions in sea urchin embryos. Results showed that the expression of MTs is regulated throughout development in a cell type-specific manner and in response to various metals. The MT7 transcript is expressed in all tissues, especially in the stomach and in the intestine of the larva, but it is less metal-responsive. -
Psammechinus Miliaris (P.L.S. Müller, 1771)
Psammechinus miliaris (P.L.S. Müller, 1771) AphiaID: 124319 OURIÇO-DO-MAR-VERDE Animalia (Reino) > Echinodermata (Filo) > Echinozoa (Subfilo) > Echinoidea (Classe) > Euechinoidea (Subclasse) > Carinacea (Infraclasse) > Echinacea (Superordem) > Camarodonta (Ordem) > Echinidea (Infraordem) > Parechinidae (Familia) © Vasco Ferreira - OMARE - Observatório Marinho de Esposende / Out. 06 © Vasco Ferreira - OMARE - Observatório Marinho de Esposende / Out. 05 2017 2017 Karls Van Ginderdeuren v_s_ - iNaturalist.org Facilmente confundível com: 1 Sphaerechinus Echinus esculentus granularis Ouriço-do-mar Ouriço-do-mar Strongylocentrotus Paracentrotus lividus droebachiensis Ouriço-do-mar . Sinónimos Echinus (Psammechinus) korenii Desor in L. Agassiz & Desor, 1846 Echinus basteri Gmelin, 1791 Echinus miliaris P.L.S. Müller, 1771 Echinus pustulatus L. Agassiz, 1841 Echinus virens Düben & Koren, 1844 Parechinus miliaris (P.L.S. Müller, 1771) Parechinus miliaris Mortensen, 1903 Psammechinus korenii Desor in L. Agassiz & Desor, 1846 Psammechinus pustulatus (L. Agassiz, 1841) Referências additional source Massin, C.; Norro, A.; Mallefet, J. (2002). Biodiversity of a wreck from the Belgian Continental Shelf: monitoring using scientific diving. Preliminary results. Bull. IRSNB (Biologie) 72, pp 67-72. [details] basis of record Hansson, H.G. (2001). Echinodermata, in: Costello, M.J. et al. (Ed.) (2001). European register of marine species: a check-list of the marine species in Europe and a bibliography of guides to their identification. Collection Patrimoines Naturels,. 50: pp. 336-351. [details] redescription Mortensen, T. (1943). A Monograph of the Echinoidea. III, 3. Camarodonta. II. Echinidæ, Strongylocentrotidæ, Parasaleniidæ, Echinometridæ. 446 pp., C. A. Reitzel, Copenhagen. [details] additional source Southward, E.C.; Campbell, A.C. (2006). [Echinoderms: keys and notes for the identification of British species]. Synopses of the British fauna (new series), 56. -
Phenotypic Plasticity of Paracentrotus Lividus (Echinodermata: Echinoidea) in a Lagoonal Environment Catherine Fernandez, Charles-Francois Boudouresque
Phenotypic plasticity of Paracentrotus lividus (Echinodermata: Echinoidea) in a lagoonal environment Catherine Fernandez, Charles-Francois Boudouresque To cite this version: Catherine Fernandez, Charles-Francois Boudouresque. Phenotypic plasticity of Paracentrotus lividus (Echinodermata: Echinoidea) in a lagoonal environment. Marine Ecology Progress Series, Inter Re- search, 1997, 152, pp.145-154. hal-01768404 HAL Id: hal-01768404 https://hal.archives-ouvertes.fr/hal-01768404 Submitted on 17 Apr 2018 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. MARINE ECOLOGY PROGRESS SERIES Published June 26 Mar Ecol Prog Ser Phenotypic plasticity of Paracentrotus lividus (Echinodermata: Echinoidea) in a lagoonal environment Catherine ~ernandez'r~r*,Charles-Franqois ~oudouresque~ 'CEVAREN and CRITT Corse Technologie, Universite de Corse, BP 52, F-20250 Corte, France 'UMR-DIMAR 3, BP 901. Faculte des Sciences de Luminy. F-13288 Marseilles Cedex 9, France ABSTRACT. The relative sizes of the different somatic and gonad components of the sea urchin Para- centrotus liv~dus(Lamarck) were studied at 2 sites in a coastal Mediterranean lagoon to demonstrate the phenotypic plasticity of this species to environmental conditions. Sampling sites varied with regard to substrate type, sea urchin population density, and, in particular, food resource.