A Unique Skeletal Microstructure of the Deepsea Micrabaciid Scleractinian
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Information Review for Protected Deep-Sea Coral Species in the New Zealand Region
INFORMATION REVIEW FOR PROTECTED DEEP-SEA CORAL SPECIES IN THE NEW ZEALAND REGION NIWA Client Report: WLG2006-85 November 2006 NIWA Project: DOC06307 INFORMATION REVIEW FOR PROTECTED DEEP-SEA CORAL SPECIES IN THE NEW ZEALAND REGION Authors Mireille Consalvey Kevin MacKay Di Tracey Prepared for Department of Conservation NIWA Client Report: WLG2006-85 November 2006 NIWA Project: DOC06307 National Institute of Water & Atmospheric Research Ltd 301 Evans Bay Parade, Greta Point, Wellington Private Bag 14901, Kilbirnie, Wellington, New Zealand Phone +64-4-386 0300, Fax +64-4-386 0574 www.niwa.co.nz © All rights reserved. This publication may not be reproduced or copied in any form without the permission of the client. Such permission is to be given only in accordance with the terms of the client's contract with NIWA. This copyright extends to all forms of copying and any storage of material in any kind of information retrieval system. Contents Executive Summary iv 1. Introduction 1 2. Corals 1 3. Habitat 3 4. Corals as a habitat 3 5. Major taxonomic groups of deep-sea corals in New Zealand 5 6. Distribution of deep-sea corals in the New Zealand region 9 7. Systematics of deep-sea corals in New Zealand 18 8. Reproduction and recruitment of deep-sea corals 20 9. Growth rates and deep-sea coral ageing 22 10. Fishing effects on deep-sea corals 24 11. Other threats to deep-sea corals 29 12. Ongoing research into deep-sea corals in New Zealand 29 13. Future science and challenges to deep-sea coral research in New Zealand 30 14. -
Checklist of Fish and Invertebrates Listed in the CITES Appendices
JOINTS NATURE \=^ CONSERVATION COMMITTEE Checklist of fish and mvertebrates Usted in the CITES appendices JNCC REPORT (SSN0963-«OStl JOINT NATURE CONSERVATION COMMITTEE Report distribution Report Number: No. 238 Contract Number/JNCC project number: F7 1-12-332 Date received: 9 June 1995 Report tide: Checklist of fish and invertebrates listed in the CITES appendices Contract tide: Revised Checklists of CITES species database Contractor: World Conservation Monitoring Centre 219 Huntingdon Road, Cambridge, CB3 ODL Comments: A further fish and invertebrate edition in the Checklist series begun by NCC in 1979, revised and brought up to date with current CITES listings Restrictions: Distribution: JNCC report collection 2 copies Nature Conservancy Council for England, HQ, Library 1 copy Scottish Natural Heritage, HQ, Library 1 copy Countryside Council for Wales, HQ, Library 1 copy A T Smail, Copyright Libraries Agent, 100 Euston Road, London, NWl 2HQ 5 copies British Library, Legal Deposit Office, Boston Spa, Wetherby, West Yorkshire, LS23 7BQ 1 copy Chadwick-Healey Ltd, Cambridge Place, Cambridge, CB2 INR 1 copy BIOSIS UK, Garforth House, 54 Michlegate, York, YOl ILF 1 copy CITES Management and Scientific Authorities of EC Member States total 30 copies CITES Authorities, UK Dependencies total 13 copies CITES Secretariat 5 copies CITES Animals Committee chairman 1 copy European Commission DG Xl/D/2 1 copy World Conservation Monitoring Centre 20 copies TRAFFIC International 5 copies Animal Quarantine Station, Heathrow 1 copy Department of the Environment (GWD) 5 copies Foreign & Commonwealth Office (ESED) 1 copy HM Customs & Excise 3 copies M Bradley Taylor (ACPO) 1 copy ^\(\\ Joint Nature Conservation Committee Report No. -
The Earliest Diverging Extant Scleractinian Corals Recovered by Mitochondrial Genomes Isabela G
www.nature.com/scientificreports OPEN The earliest diverging extant scleractinian corals recovered by mitochondrial genomes Isabela G. L. Seiblitz1,2*, Kátia C. C. Capel2, Jarosław Stolarski3, Zheng Bin Randolph Quek4, Danwei Huang4,5 & Marcelo V. Kitahara1,2 Evolutionary reconstructions of scleractinian corals have a discrepant proportion of zooxanthellate reef-building species in relation to their azooxanthellate deep-sea counterparts. In particular, the earliest diverging “Basal” lineage remains poorly studied compared to “Robust” and “Complex” corals. The lack of data from corals other than reef-building species impairs a broader understanding of scleractinian evolution. Here, based on complete mitogenomes, the early onset of azooxanthellate corals is explored focusing on one of the most morphologically distinct families, Micrabaciidae. Sequenced on both Illumina and Sanger platforms, mitogenomes of four micrabaciids range from 19,048 to 19,542 bp and have gene content and order similar to the majority of scleractinians. Phylogenies containing all mitochondrial genes confrm the monophyly of Micrabaciidae as a sister group to the rest of Scleractinia. This topology not only corroborates the hypothesis of a solitary and azooxanthellate ancestor for the order, but also agrees with the unique skeletal microstructure previously found in the family. Moreover, the early-diverging position of micrabaciids followed by gardineriids reinforces the previously observed macromorphological similarities between micrabaciids and Corallimorpharia as -
Deep Sea Coral Collection Protocols4.Pmd
FAU Institutional Repository http://purl.fcla.edu/fau/fauir This paper was submitted by the faculty of FAU’s Harbor Branch Oceanographic Institute. Notice: ©2006 Office of Habitat Conservation, NOAA National Marine Fisheries Service, Silver Spring, MD. This publication is available at http://purl.access.gpo.gov/GPO/LPS120470 and may be cited as: Etnoyer, P., Cairns, S. D., Sanchez, J. A., Reed, J. K., Lopez, J. V., Schroeder, W. W., Brooke, S. D., Watling, L., Baco‐Taylor, A., Williams, G. C., Lindner, A., France, S. C., & Bruckner, A. W. (2006). Deep‐ sea coral collection protocols: a synthesis of field experience from deep‐sea coral researchers, designed to build our national capacity to document deep‐sea coral diversity. In P. J. Etnoyer, NOAA Technical Memorandum NMFS‐OPR‐28. (pp. 1‐49). DEEP-SEA CORAL COLLECTION PROTOCOLS A synthesis of field experience from deep-sea coral researchers, designed to build our national capacity to document deep-sea coral diversity Etnoyer, P., S. D. Cairns, J. A. Sanchez, J. K. Reed, J.V. Lopez, W.W. Schroeder, S. D. Brooke, L. Watling, A. Baco-Taylor, G. C. Williams, A. Lindner, S. C. France, and A.W. Bruckner U.S. Department of Commerce National Oceanic and Atmospheric Administration National Marine Fisheries Service NOAA Technical Memorandum NMFS-OPR-28 August 2006 Citation for the document: Etnoyer, P., S. D. Cairns, J. A. Sanchez, J. K. Reed, J.V. Lopez, W.W. Schroeder, S. D. Brooke, L. Watling, A. Baco-Taylor, G. C. Williams, A. Lindner, S. C. France, and A.W. Bruckner. 2006. Deep-Sea Coral Collection Protocols. -
CNIDARIA Corals, Medusae, Hydroids, Myxozoans
FOUR Phylum CNIDARIA corals, medusae, hydroids, myxozoans STEPHEN D. CAIRNS, LISA-ANN GERSHWIN, FRED J. BROOK, PHILIP PUGH, ELLIOT W. Dawson, OscaR OcaÑA V., WILLEM VERvooRT, GARY WILLIAMS, JEANETTE E. Watson, DENNIS M. OPREsko, PETER SCHUCHERT, P. MICHAEL HINE, DENNIS P. GORDON, HAMISH J. CAMPBELL, ANTHONY J. WRIGHT, JUAN A. SÁNCHEZ, DAPHNE G. FAUTIN his ancient phylum of mostly marine organisms is best known for its contribution to geomorphological features, forming thousands of square Tkilometres of coral reefs in warm tropical waters. Their fossil remains contribute to some limestones. Cnidarians are also significant components of the plankton, where large medusae – popularly called jellyfish – and colonial forms like Portuguese man-of-war and stringy siphonophores prey on other organisms including small fish. Some of these species are justly feared by humans for their stings, which in some cases can be fatal. Certainly, most New Zealanders will have encountered cnidarians when rambling along beaches and fossicking in rock pools where sea anemones and diminutive bushy hydroids abound. In New Zealand’s fiords and in deeper water on seamounts, black corals and branching gorgonians can form veritable trees five metres high or more. In contrast, inland inhabitants of continental landmasses who have never, or rarely, seen an ocean or visited a seashore can hardly be impressed with the Cnidaria as a phylum – freshwater cnidarians are relatively few, restricted to tiny hydras, the branching hydroid Cordylophora, and rare medusae. Worldwide, there are about 10,000 described species, with perhaps half as many again undescribed. All cnidarians have nettle cells known as nematocysts (or cnidae – from the Greek, knide, a nettle), extraordinarily complex structures that are effectively invaginated coiled tubes within a cell. -
The State of Knowledge of Deep-Sea Corals in the New Zealand Region Di Tracey1 and Freya Hjorvarsdottir2 (Eds, Comps) © 2019
The state of knowledge of deep-sea corals in the New Zealand region Di Tracey1 and Freya Hjorvarsdottir2 (eds, comps) © 2019. All rights reserved. The copyright for this report, and for the data, maps, figures and other information (hereafter collectively referred to as “data”) contained in it, is held by NIWA is held by NIWA unless otherwise stated. This copyright extends to all forms of copying and any storage of material in any kind of information retrieval system. While NIWA uses all reasonable endeavours to ensure the accuracy of the data, NIWA does not guarantee or make any representation or warranty (express or implied) regarding the accuracy or completeness of the data, the use to which the data may be put or the results to be obtained from the use of the data. Accordingly, NIWA expressly disclaims all legal liability whatsoever arising from, or connected to, the use of, reference to, reliance on or possession of the data or the existence of errors therein. NIWA recommends that users exercise their own skill and care with respect to their use of the data and that they obtain independent professional advice relevant to their particular circumstances. NIWA SCIENCE AND TECHNOLOGY SERIES NUMBER 84 ISSN 1173-0382 Citation for full report: Tracey, D.M. & Hjorvarsdottir, F. (eds, comps) (2019). The State of Knowledge of Deep-Sea Corals in the New Zealand Region. NIWA Science and Technology Series Number 84. 140 p. Recommended citation for individual chapters (e.g., for Chapter 9.: Freeman, D., & Cryer, M. (2019). Current Management Measures and Threats, Chapter 9 In: Tracey, D.M. -
Deep-Sea Coral Taxa in the Alaska Region: Depth and Geographical Distribution (V
Deep-Sea Coral Taxa in the Alaska Region: Depth and Geographical Distribution (v. 2020) Robert P. Stone1 and Stephen D. Cairns2 1. NOAA Auke Bay Laboratories, Alaska Fisheries Science Center, Juneau, AK 2. National Museum of Natural History, Smithsonian Institution, Washington, DC This annex to the Alaska regional chapter in “The State of Deep-Sea Coral Ecosystems of the United States” lists deep-sea coral species in the Phylum Cnidaria, Classes Anthozoa and Hydrozoa, known to occur in the U.S. Alaska region (Figure 1). Deep-sea corals are defined as azooxanthellate, heterotrophic coral species occurring in waters 50 meters deep or more. Details are provided on the vertical and geographic extent of each species (Table 1). This list is an update of the peer-reviewed 2017 list (Stone and Cairns 2017) and includes taxa recognized through 2020. Records are drawn from the published literature (including species descriptions) and from specimen collections that have been definitively identified by experts through examination of microscopic characters. Video records collected by the senior author have also been used if considered highly reliable; that is, in situ identifications were made based on an expertly identified voucher specimen collected nearby. Taxonomic names are generally those currently accepted in the World Register of Marine Species (WoRMS), and are arranged by order, and alphabetically within order by suborder (if applicable), family, genus, and species. Data sources (references) listed are those principally used to establish geographic and depth distribution, and are numbered accordingly. In summary, we have confirmed the presence of 142 unique coral taxa in Alaskan waters, including three species of alcyonaceans described since our 2017 list. -
PART F, REVISED, VOLUME 2, CHAPTER 11: SYSTEMATIC DESCRIPTIONS of the SCLERACTINIA FAMILY MICRABACIIDAE Rosemarie C
Micrabaciidae 1 PART F, REVISED, VOLUME 2, CHAPTER 11: SYSTEMATIC DESCRIPTIONS OF THE SCLERACTINIA FAMILY MICRABACIIDAE ROSEMARIE C. BARON-SZABO1,2 and STEPHEN D. CAIRNS1 [1Department of Invertebrate Zoology, Smithsonian Institution, Washington, DC, USA, [email protected] and [email protected]; 2Senckenberg Research Institute, Frankfurt/Main, Germany, [email protected]] INTRODUCTION tion and was even called pseudo-bifurcate by JANISZEWSKA, JAROSZEWICZ, and STOLARSKI The Micrabaciidae is one of the smallest (2013). The unique microstructural skeletal and least diverse scleractinian families, composition was first described by JANISZEW- consisting of the five genera: Micrabacia SKA and others (2011) and later elaborated MILNE EDWArdS & HAIME (20 fossil species), by JANISZEWSKA and others (2015). The MOSELEY (four extant species), Leptopenus molecular monophyly, based exclusively on YABE & EGUCHI (four extant Letepsammia the mitochondrial gene CO1, was discussed species), Rhombopsammia OWENS (two extant by KITAHARA and others (2010), and based species), and MICHELIN Stephanophyllia on four genes, both mitochondrial and (three extant and ten fossil species). Thus, nuclear, by STOLARSKI and others (2011). nearly 40 valid species pertain to this family According to KITAHARA and others (2010) (CAIRNS, 1989, p. 13–24; BARON-SZABO, and STOLARSKI and others (2011), the Micra- 2002, p. 130–131; 2008, p. 147–153), most baciidae, along with the Gardineriidae, form of which (30) are known exclusively as fossils. a deeply diverging basal clade, equivalent to Only the two genera, MOSELEY, Leptopenus the robust and complex clades that encom- 1881 and OWENS, 1986 are Rhombopsammia pass all other Scleractinia. as yet known exclusively from the Holocene. This chapter gives an overview of the The monophyly of the family is supported taxonomy, stratigraphy, and geography of by macromorphological, microstructural, the genera currently included in the family and molecular evidence. -
A Revision of the Ahermatypic Scleractinia of the Philippine Islands and Adjacent Waters, Part 1
* A Revision of the Ahermatypic Scleractinia of the Philippine Islands and Adjacent Waters, Part 1: Fungiacyathidae, Micrabaciidae, Turbinoliinae, Guyniidae, and Flabellidae STEPHEN D. CAIRNS I SMITHSONIAN CONTRIBUTIONS TO ZOOLOGY • NUMBER 486 SERIES PUBLICATIONS OF THE SMITHSONIAN INSTITUTION Emphasis upon publication as a means of "diffusing knowledge" was expressed by the first Secretary of the Smithsonian. In his formal plan for the Institution, Joseph Henry outlined a program that included the following statement: "It is proposed to publish a series of reports, giving an account of the new discoveries in science, and of the changes made from year to year in all branches of knowledge." This theme of basic research has been adhered to through the years by thousands of titles issued in series publications under the Smithsonian imprint, commencing with Smithsonian Contributions to Knowledge in 1848 and continuing with the following active series: Smithsonian Contributions to Anthropology Smithsonian Contributions to Astrophysics Smithsonian Contributions to Botany Smithsonian Contributions to the Earth Sciences Smithsonian Contributions to the Marine Sciences Smithsonian Contributions to Paleobiology Smithsonian Contributions to Zoology Smithsonian Folklife Studies Smithsonian Studies in Air and Space Smithsonian Studies in History and Technology In these series, the Institution publishes small papers and full-scale monographs that report the research and collections of its various museums and bureaux or of professional colleagues in the world of science and scholarship. The publications are distributed by mailing lists to libraries, universities, and similar institutions throughout the world. Papers or monographs submitted for series publication are received by the Smithsonian Institution Press, subject to its own review for format and style, only through departments of the various Smithsonian museums or bureaux, where the manuscripts are given substantive review. -
Sepkoski, J.J. 1992. Compendium of Fossil Marine Animal Families
MILWAUKEE PUBLIC MUSEUM Contributions . In BIOLOGY and GEOLOGY Number 83 March 1,1992 A Compendium of Fossil Marine Animal Families 2nd edition J. John Sepkoski, Jr. MILWAUKEE PUBLIC MUSEUM Contributions . In BIOLOGY and GEOLOGY Number 83 March 1,1992 A Compendium of Fossil Marine Animal Families 2nd edition J. John Sepkoski, Jr. Department of the Geophysical Sciences University of Chicago Chicago, Illinois 60637 Milwaukee Public Museum Contributions in Biology and Geology Rodney Watkins, Editor (Reviewer for this paper was P.M. Sheehan) This publication is priced at $25.00 and may be obtained by writing to the Museum Gift Shop, Milwaukee Public Museum, 800 West Wells Street, Milwaukee, WI 53233. Orders must also include $3.00 for shipping and handling ($4.00 for foreign destinations) and must be accompanied by money order or check drawn on U.S. bank. Money orders or checks should be made payable to the Milwaukee Public Museum. Wisconsin residents please add 5% sales tax. In addition, a diskette in ASCII format (DOS) containing the data in this publication is priced at $25.00. Diskettes should be ordered from the Geology Section, Milwaukee Public Museum, 800 West Wells Street, Milwaukee, WI 53233. Specify 3Y. inch or 5Y. inch diskette size when ordering. Checks or money orders for diskettes should be made payable to "GeologySection, Milwaukee Public Museum," and fees for shipping and handling included as stated above. Profits support the research effort of the GeologySection. ISBN 0-89326-168-8 ©1992Milwaukee Public Museum Sponsored by Milwaukee County Contents Abstract ....... 1 Introduction.. ... 2 Stratigraphic codes. 8 The Compendium 14 Actinopoda. -
Information to Users
INFORMATION TO USERS This manuscripthas been reproduced from the microfilm master. UMI films the text directly from the original or copysubmitted. Thus, some thesis and dissertation copies are in typewriter face, while others may be from anytype of computerprinter. The quality of this l'eproductioD is dependent upon the quality ef the copy submitted. Broken or indistinct print, colored or poor quality illustrations and photographs, print bleedthrough, substandard margins, and improper alignment can adverselyaffect reproduction. In the unlikely.event that the author did not send UMI a complete manuscript and there are missing pages, these will be noted. Also, if unauthorized copyright material had to be removed, a note will indicate the deletion. Oversize materials (e.g., maps, drawings, charts) are reproduced by sectioning the original, beginning at the upper left-hand comer and continuing from left to rightin equal sectionswith small overlaps. Each original is also photographed in one exposure and is included in reduced form at the back of the book. Photographs included in the original manuscript have been reproduced xerographically in this copy. Higher quality 6" x 9" black and white photographic prints are available for any photographs or illustrations appearing in this copy for an additional charge. Contact UMIdirectly to order. UMI A Bell & Howell Information Company 300 North Zeeb Road. Ann Arbor. MI48106-1346 USA 313!761-47oo 800:521-0600 ------- _._.."., ... __ .. -.~-~.~'-~-~='=====~~~ ---------,,--~-~.,---- A MOLECULAR PHYLOGENETIC ANALYSIS OF REEF-BUILDING CORALS A DISSERTATION SUBMIt lED TO THE GRADUATE DIVISION OF THE UNIVERSITY OF HAWAII IN PARTIAL FULFILLMENT OFTHE REQUIREMENTS FOR THE DEGREE OF oocroaOF PHILOSOPHY IN ZOOLOGY MAY 1995 By Sandra L. -
Class Anthozoa Ehrenberg, 1834. In: Zhang, Z.-Q
Class Anthozoa Ehrenberg, 18341 (2 subclasses)2 Subclass Hexacorallia Haeckel, 1866 (6 orders) Order Actiniaria Hertwig, 1882 (3 suborders)3 Suborder Endocoelantheae Carlgren, 1925 (2 families) Family Actinernidae Stephenson, 1922 (4 genera, 7 species) Family Halcuriidae Carlgren, 1918 (2 genera, 10 species) Suborder Nynantheae Carlgren, 1899 (3 infraorders) Infraorder Boloceroidaria Carlgren, 1924 (2 families) Family Boloceroididae Carlgren, 1924 (3 genera, 9 species) Family Nevadneidae Carlgren, 1925 (1 genus, 1 species) Infraorder Thenaria Carlgren, 1899 Acontiaria (14 families) Family Acontiophoridae Carlgren, 1938 (3 genera, 5 species) Family Aiptasiidae Carlgren, 1924 (6 genera, 26 species) Family Aiptasiomorphidae Carlgren, 1949 (1 genus, 4 species) Family Antipodactinidae Rodríguez, López-González, & Daly, 2009 (1 genus, 2 species)4 Family Bathyphelliidae Carlgren, 1932 (5 genera, 9 species) Family Diadumenidae Stephenson, 1920 (1 genus, 9 species) Family Haliplanellidae Hand, 1956 (1 genus, 1 species)5 Family Hormathiidae Carlgren, 1932 (20 genera, 131 species) Family Isophelliidae Stephenson, 1935 (7 genera, 46 species) Family Kadosactinidae Riemann-Zürneck, 1991 (2 genera, 6 species) Family Metridiidae Carlgren, 1893 (2 genera, 7 species) Family Nemanthidae Carlgren, 1940 (1 genus, 3 species) Family Sagartiidae Gosse, 1858 (17 genera, 105 species) Family Sagartiomorphidae Carlgren, 1934 (1 genus, 1 species) incertae sedis (3 genera, 5 species) Endomyaria (13 families) Family Actiniidae Rafinesque, 1815 (55 genera, 328 species)