DOCSLIB.ORG

Information to Users

Total Page：16

File Type：pdf, Size：1020Kb

Download full-text PDF Read full-text
Information to Users INFORMATION TO USERS This manuscripthas been reproduced from the microfilm master. UMI films the text directly from the original or copysubmitted. Thus, some thesis and dissertation copies are in typewriter face, while others may be from anytype of computerprinter. The quality of this l'eproductioD is dependent upon the quality ef the copy submitted. Broken or indistinct print, colored or poor quality illustrations and photographs, print bleedthrough, substandard margins, and improper alignment can adverselyaffect reproduction. In the unlikely.event that the author did not send UMI a complete manuscript and there are missing pages, these will be noted. Also, if unauthorized copyright material had to be removed, a note will indicate the deletion. Oversize materials (e.g., maps, drawings, charts) are reproduced by sectioning the original, beginning at the upper left-hand comer and continuing from left to rightin equal sectionswith small overlaps. Each original is also photographed in one exposure and is included in reduced form at the back of the book. Photographs included in the original manuscript have been reproduced xerographically in this copy. Higher quality 6" x 9" black and white photographic prints are available for any photographs or illustrations appearing in this copy for an additional charge. Contact UMIdirectly to order. UMI A Bell & Howell Information Company 300 North Zeeb Road. Ann Arbor. MI48106-1346 USA 313!761-47oo 800:521-0600 ------- _._.."., ... __ .. -.~-~.~'-~-~='=====~~~ ---------,,--~-~.,---- A MOLECULAR PHYLOGENETIC ANALYSIS OF REEF-BUILDING CORALS A DISSERTATION SUBMIt lED TO THE GRADUATE DIVISION OF THE UNIVERSITY OF HAWAII IN PARTIAL FULFILLMENT OFTHE REQUIREMENTS FOR THE DEGREE OF oocroaOF PHILOSOPHY IN ZOOLOGY MAY 1995 By Sandra L. Romano Dissertation Committee: Stephen R. Palumbi, Chairperson H. Gert deCouet James E. Maragos Robert H. Richmond Rebecca L Cann ------~---_.~. _...~- ._~ .. _- ---------~-- ---~ UMI Number: 9532623 Copyright 1995 by Romano, Sandra L. All rights reserved. OM! Microform 9532623 Copyright 1995, by OM! Company. All rights reserved. This microform edition is protected against unauthorized copying under Title 17, United States Code. UMI 300 North Zeeb Road Ann Arbor, MI 48103 © Copyright 1995 by Sandra L. Romano All Rights Reserved iii ------------- ... to my Mom (1940-1993) and my Daddy iv ------------ _._- ACKNOWLEDGMENTS Financial support for this research has come from NSF grants to Dr. Stephen Palumbi, a NIH grant to Dr. Robert Richmond, the Dept. of Zoology, the Edmondson Research Fund, Sigma Xi, the Constance Endicott Hartt Fund through the American Associaton of University Women, and John and Veronica Romano. I gratefully acknowledge the persons who obtained coral samples for me: Dr. Robert Richmond, Dr. James Maragos (who perfected his 'coral chop' in the Solomon Islands), Dr. Bruce Carlson (who risked pens, sunglasses and clean clothes in the pruning of his pet corals) of the Waikiki Aquarium, Dr. Stephen Cairns of the National Museum of Natural History, Dr. David Krupp, Dave Gulko, and Richard Chock. I thank my advisor, friend, and mentor, Steve Palumbi, for giving freely of his time and energy through all phases of this research. He has provided me with endless enthusiasm, inspiration, and support. I thank my committee members who have provided advice, support and encouragment when I've needed it most in seeing this project through. Charlie Veron provided valuable insight into and helpful discussion about coral evolution at a crucial time during analyses. I acknowledge Cindy Hunter for her technical assistance. Robert Hixson and Chris Simon provided advice on secondary structure. George Roderick provided assistance with figures. The members of the Palumbi Lab have been instrumental in this project. They have all provided. camaraderie and technical expertise in the lab as well as helpful comments and discussion as I was trying to understand the twists and turns of my dataset. I thank them for their assistance (especially in overseeing my mini-gels), support, and encouragement. Bailey Kessing and v Andrew Martin were especially valuable, and most of the time patient, as I " made my first forays into the laboratory and the world of molecular biology. Ed Metz and Owen McMillan survived four years in the lab with me and made the ex-perience lively, educational, and fun. I thank Paul Armstrong, Tom Duda, and Frank Cipriano for helping to keep life in the lab in perspective over the last year. The administrative support of Lori Yamamura, Sally Oshiro and Audrey Shintani of the Zoology Dept., as well as of Frances Okimoto and Geri Mintomi at Kewalo Marine Lab is gratefully acknowledged. I'd like to give special thanks to the following people for helping me to maintain some sense of reality as I have been writing and to 'finish up' in as pain-free and pleasant a way as possible: Steve Palumbi, the participants in GWIZ, Cindy Hunter, Kim. del Carmen, Theresa Cabrera, Krista Ingram, Flo Thomas, Rosie Gillespie, Leanne Fernandes, Dr. Erik Meesters, Dave Hopper, Jean-Sylvain Bussac, George Roderick, Sweet William Roderick, and the members of the Delaware Expedition to Hawaii. Leanne Fernandes and Dr. Erik Meesters, while trying to be as unobtrusive as possible in our common living space so as not to disturb me, contributed enormously to maintaining my sanity and peace of mind on a daily basis in the final stages of writing this dissertation. Finally, I thank my family for their support in every way throughout my years as a graduate student. vi --------_._--- --- ABSTRAcr Review of the evolutionary history of scleractinian corals demonstrates the great deal of knowledge gained from their 240 million year fossil record, and from studies of all aspects of their biology and ecology. By contrast, forces driving the evolution of corals are not well understood due to the great variability that exists in characters used in classification and to difficulties in working with fossil specimens. Traditional hypotheses about relationships among families and suborders are tenuous and somewhat contradictory. Molecular techniques were used for the first time to evaluate relationships among corals. A segment of the mitochondrial16S ribosomal gene from 34 species in 14 families was amplified via the Polymerase Chain Reaction and sequenced. These sequences are homologous to each other and to other metazoan 165 ribosomal sequences in terms of nucleotide composition, patterns of transition and transversion substitutions, spatial patterns of substitutions, rates of divergence, and secondary structure. Parsimony analysis of the aligned sequences results in a phylogram whose major groups are supported at bootstrap values of 80% or higher. Comparisons of molecular and morphological hypotheses demonstrate that 1) this molecular topology is robust by itself, 2) it is robust in relation to traditional morphological topologies, and 3) available morphological characters are not a reliable tool for inferring family and suborder relationships. Although this molecular hypothesis supports traditional hypotheses for relationships within genera and families, clades on the molecular phylogram do not correspond to morphologically based family and suborder relationships. This molecular hypothesis suggests vii two major lineages of Scleractinia diverged from a common ancestor at least 300 mya. One of these lineages, the robust corals, tends to be heavily calcified and less architecturally complex forming predominantly massive or plate-like colonies which grow by intratentacular budding. The second lineage, the complex corals, is characterized by less heavily calcified skeletons that are architecturally complex, forming predominantly branching colonies which grow by extratentacular budding. A switch between hermaphroditism and gonochorism appears to have occurred at least 3 times. Some of the recent changes in scleractinian taxonomy are supported by this molecular hypothesis which also suggests new relationships among families to be considered. viii -------- -_. _._- TABLE OF CONTENTS ACKl\TOWLEDGMENTS v ABSTRACT ., vii LIST OF TABLES ..........•...•.............•...••..••......•...•..••..•............•.....•...............................xiii LIST OFFIGURES xiv IN'TRODUCTION 1 CHAPTER 1. The Evolutionary History of Scleractinian Corals: A Review 0 •••••••••••••••••••••••••••••••••••••••••••••••••••••4 Introduction 4 Evolution of Scleractinians through geological time 5 The Triassic 7 The Jurassic 10 The Cretaceous : 11 The Paleogene 14 World climate and geography during the Neogene 15 The Miocene 16 The Pliocene 17 Evolution of biogegograpic provinces 18 Distribution of azooxanthe11ate corals 19 Distribution of reef-building corals 21 The Indo-Pacific. 22 Distribution of reef-building corals in the Atlantic 25 Theories of coral distribution 28 Evolution and taxonomy of scleractinian groups 31 ix Scleractinian evolution as described by Wells (1956) 33 Scleractinian evolution as described by Veron (1995) 38 Scleractinian classification according to Alloiteau (1952) 42 Scleractinian classification according to Chevalier and Beauvais (1987) 43 Scleractinian evolution based entirely on microstructural analysis 45 Summary of classifications 46 Non-morphological methods of scleractinian classification 47 Quantitative analyses of relationships among the Scleractinia 48 Biochemical studies of scleractinian evolution 49 Summary 51 CHAPTER 2. Molecular Evolution of a Portion of the Mitochondrial 16S Ribosomal Gene
Load more

Recommended publications
  • Characterization of Translationally Controlled Tumour Protein from the Sea Anemone Anemonia Viridis and Transcriptome Wide Identification of Cnidarian Homologues
    G C A T T A C G G C A T genes Article Characterization of Translationally Controlled Tumour Protein from the Sea Anemone Anemonia viridis and Transcriptome Wide Identification of Cnidarian Homologues Aldo Nicosia 1,* ID , Carmelo Bennici 1, Girolama Biondo 1, Salvatore Costa 2 ID , Marilena Di Natale 1, Tiziana Masullo 1, Calogera Monastero 1, Maria Antonietta Ragusa 2, Marcello Tagliavia 1 and Angela Cuttitta 1,* 1 National Research Council-Institute for Marine and Coastal Environment (IAMC-CNR), Laboratory of Molecular Ecology and Biotechnology, Detached Unit of Capo Granitola, Via del mare, 91021 Torretta Granitola (TP), Sicily, Italy; [email protected] (C.B.); [email protected] (G.B.); [email protected] (M.D.N.); [email protected] (T.M.); [email protected] (C.M.); [email protected] (M.T.) 2 Department of Biological, Chemical and Pharmaceutical Sciences and Technologies, University of Palermo, Viale delle Scienze, Ed. 16, 90128 Palermo, Sicily, Italy; [email protected] (S.C.); [email protected] (M.A.R.) * Correspondence: [email protected] (A.N.); [email protected] (A.C.); Tel.: +39-0924-40600 (A.N. & A.C.) Received: 10 November 2017; Accepted: 5 January 2018; Published: 11 January 2018 Abstract: Gene family encoding translationally controlled tumour protein (TCTP) is defined as highly conserved among organisms; however, there is limited knowledge of non-bilateria. In this study, the first TCTP homologue from anthozoan was characterised in the Mediterranean Sea anemone, Anemonia viridis. The release of the genome sequence of Acropora digitifera, Exaiptasia pallida, Nematostella vectensis and Hydra vulgaris enabled a comprehensive study of the molecular evolution of TCTP family among cnidarians.
    [Show full text]
  • The Coral Trait Database, a Curated Database of Trait Information for Coral Species from the Global Oceans
    www.nature.com/scientificdata OPEN The Coral Trait Database, a curated SUBJECT CATEGORIES » Community ecology database of trait information for » Marine biology » Biodiversity coral species from the global oceans » Biogeography 1 2 3 2 4 Joshua S. Madin , Kristen D. Anderson , Magnus Heide Andreasen , Tom C.L. Bridge , , » Coral reefs 5 2 6 7 1 1 Stephen D. Cairns , Sean R. Connolly , , Emily S. Darling , Marcela Diaz , Daniel S. Falster , 8 8 2 6 9 3 Erik C. Franklin , Ruth D. Gates , Mia O. Hoogenboom , , Danwei Huang , Sally A. Keith , 1 2 2 4 10 Matthew A. Kosnik , Chao-Yang Kuo , Janice M. Lough , , Catherine E. Lovelock , 1 1 1 11 12 13 Osmar Luiz , Julieta Martinelli , Toni Mizerek , John M. Pandolfi , Xavier Pochon , , 2 8 2 14 Morgan S. Pratchett , Hollie M. Putnam , T. Edward Roberts , Michael Stat , 15 16 2 Carden C. Wallace , Elizabeth Widman & Andrew H. Baird Received: 06 October 2015 28 2016 Accepted: January Trait-based approaches advance ecological and evolutionary research because traits provide a strong link to Published: 29 March 2016 an organism’s function and fitness. Trait-based research might lead to a deeper understanding of the functions of, and services provided by, ecosystems, thereby improving management, which is vital in the current era of rapid environmental change. Coral reef scientists have long collected trait data for corals; however, these are difficult to access and often under-utilized in addressing large-scale questions. We present the Coral Trait Database initiative that aims to bring together physiological, morphological, ecological, phylogenetic and biogeographic trait information into a single repository.
    [Show full text]
  • MARINE FAUNA and FLORA of BERMUDA a Systematic Guide to the Identification of Marine Organisms
    MARINE FAUNA AND FLORA OF BERMUDA A Systematic Guide to the Identification of Marine Organisms Edited by WOLFGANG STERRER Bermuda Biological Station St. George's, Bermuda in cooperation with Christiane Schoepfer-Sterrer and 63 text contributors A Wiley-Interscience Publication JOHN WILEY & SONS New York Chichester Brisbane Toronto Singapore ANTHOZOA 159 sucker) on the exumbrella. Color vari­ many Actiniaria and Ceriantharia can able, mostly greenish gray-blue, the move if exposed to unfavorable condi­ greenish color due to zooxanthellae tions. Actiniaria can creep along on their embedded in the mesoglea. Polyp pedal discs at 8-10 cm/hr, pull themselves slender; strobilation of the monodisc by their tentacles, move by peristalsis type. Medusae are found, upside­ through loose sediment, float in currents, down and usually in large congrega­ and even swim by coordinated tentacular tions, on the muddy bottoms of in­ motion. shore bays and ponds. Both subclasses are represented in Ber­ W. STERRER muda. Because the orders are so diverse morphologically, they are often discussed separately. In some classifications the an­ Class Anthozoa (Corals, anemones) thozoan orders are grouped into 3 (not the 2 considered here) subclasses, splitting off CHARACTERISTICS: Exclusively polypoid, sol­ the Ceriantharia and Antipatharia into a itary or colonial eNIDARIA. Oral end ex­ separate subclass, the Ceriantipatharia. panded into oral disc which bears the mouth and Corallimorpharia are sometimes consid­ one or more rings of hollow tentacles. ered a suborder of Scleractinia. Approxi­ Stomodeum well developed, often with 1 or 2 mately 6,500 species of Anthozoa are siphonoglyphs. Gastrovascular cavity compart­ known. Of 93 species reported from Ber­ mentalized by radially arranged mesenteries.
    [Show full text]
  • Fungia Fungites
    University of Groningen Fungia fungites (Linnaeus, 1758) (Scleractinia, Fungiidae) is a species complex that conceals large phenotypic variation and a previously unrecognized genus Oku, Yutaro ; Iwao, Kenji ; Hoeksema, Bert W.; Dewa, Naoko ; Tachikawa, Hiroyuki ; Koido, Tatsuki ; Fukami, Hironobu Published in: Contributions to Zoology DOI: 10.1163/18759866-20191421 IMPORTANT NOTE: You are advised to consult the publisher's version (publisher's PDF) if you wish to cite from it. Please check the document version below. Document Version Publisher's PDF, also known as Version of record Publication date: 2020 Link to publication in University of Groningen/UMCG research database Citation for published version (APA): Oku, Y., Iwao, K., Hoeksema, B. W., Dewa, N., Tachikawa, H., Koido, T., & Fukami, H. (2020). Fungia fungites (Linnaeus, 1758) (Scleractinia, Fungiidae) is a species complex that conceals large phenotypic variation and a previously unrecognized genus. Contributions to Zoology, 89(2), 188-209. https://doi.org/10.1163/18759866-20191421 Copyright Other than for strictly personal use, it is not permitted to download or to forward/distribute the text or part of it without the consent of the author(s) and/or copyright holder(s), unless the work is under an open content license (like Creative Commons). Take-down policy If you believe that this document breaches copyright please contact us providing details, and we will remove access to the work immediately and investigate your claim. Downloaded from the University of Groningen/UMCG research database (Pure): http://www.rug.nl/research/portal. For technical reasons the number of authors shown on this cover page is limited to 10 maximum.
    [Show full text]
  • Microbiomes of Gall-Inducing Copepod Crustaceans from the Corals Stylophora Pistillata (Scleractinia) and Gorgonia Ventalina
    www.nature.com/scientificreports OPEN Microbiomes of gall-inducing copepod crustaceans from the corals Stylophora pistillata Received: 26 February 2018 Accepted: 18 July 2018 (Scleractinia) and Gorgonia Published: xx xx xxxx ventalina (Alcyonacea) Pavel V. Shelyakin1,2, Sofya K. Garushyants1,3, Mikhail A. Nikitin4, Sofya V. Mudrova5, Michael Berumen 5, Arjen G. C. L. Speksnijder6, Bert W. Hoeksema6, Diego Fontaneto7, Mikhail S. Gelfand1,3,4,8 & Viatcheslav N. Ivanenko 6,9 Corals harbor complex and diverse microbial communities that strongly impact host ftness and resistance to diseases, but these microbes themselves can be infuenced by stresses, like those caused by the presence of macroscopic symbionts. In addition to directly infuencing the host, symbionts may transmit pathogenic microbial communities. We analyzed two coral gall-forming copepod systems by using 16S rRNA gene metagenomic sequencing: (1) the sea fan Gorgonia ventalina with copepods of the genus Sphaerippe from the Caribbean and (2) the scleractinian coral Stylophora pistillata with copepods of the genus Spaniomolgus from the Saudi Arabian part of the Red Sea. We show that bacterial communities in these two systems were substantially diferent with Actinobacteria, Alphaproteobacteria, and Betaproteobacteria more prevalent in samples from Gorgonia ventalina, and Gammaproteobacteria in Stylophora pistillata. In Stylophora pistillata, normal coral microbiomes were enriched with the common coral symbiont Endozoicomonas and some unclassifed bacteria, while copepod and gall-tissue microbiomes were highly enriched with the family ME2 (Oceanospirillales) or Rhodobacteraceae. In Gorgonia ventalina, no bacterial group had signifcantly diferent prevalence in the normal coral tissues, copepods, and injured tissues. The total microbiome composition of polyps injured by copepods was diferent.
    [Show full text]
  • Checklist of Fish and Invertebrates Listed in the CITES Appendices
    JOINTS NATURE \=^ CONSERVATION COMMITTEE Checklist of fish and mvertebrates Usted in the CITES appendices JNCC REPORT (SSN0963-«OStl JOINT NATURE CONSERVATION COMMITTEE Report distribution Report Number: No. 238 Contract Number/JNCC project number: F7 1-12-332 Date received: 9 June 1995 Report tide: Checklist of fish and invertebrates listed in the CITES appendices Contract tide: Revised Checklists of CITES species database Contractor: World Conservation Monitoring Centre 219 Huntingdon Road, Cambridge, CB3 ODL Comments: A further fish and invertebrate edition in the Checklist series begun by NCC in 1979, revised and brought up to date with current CITES listings Restrictions: Distribution: JNCC report collection 2 copies Nature Conservancy Council for England, HQ, Library 1 copy Scottish Natural Heritage, HQ, Library 1 copy Countryside Council for Wales, HQ, Library 1 copy A T Smail, Copyright Libraries Agent, 100 Euston Road, London, NWl 2HQ 5 copies British Library, Legal Deposit Office, Boston Spa, Wetherby, West Yorkshire, LS23 7BQ 1 copy Chadwick-Healey Ltd, Cambridge Place, Cambridge, CB2 INR 1 copy BIOSIS UK, Garforth House, 54 Michlegate, York, YOl ILF 1 copy CITES Management and Scientific Authorities of EC Member States total 30 copies CITES Authorities, UK Dependencies total 13 copies CITES Secretariat 5 copies CITES Animals Committee chairman 1 copy European Commission DG Xl/D/2 1 copy World Conservation Monitoring Centre 20 copies TRAFFIC International 5 copies Animal Quarantine Station, Heathrow 1 copy Department of the Environment (GWD) 5 copies Foreign & Commonwealth Office (ESED) 1 copy HM Customs & Excise 3 copies M Bradley Taylor (ACPO) 1 copy ^\(\\ Joint Nature Conservation Committee Report No.
    [Show full text]
  • Pseudosiderastrea Formosa Sp. Nov. (Cnidaria: Anthozoa: Scleractinia)
    Zoological Studies 51(1): 93-98 (2012) Pseudosiderastrea formosa sp. nov. (Cnidaria: Anthozoa: Scleractinia) a New Coral Species Endemic to Taiwan Michel Pichon1, Yao-Yang Chuang2,3, and Chaolun Allen Chen2,3,4,* 1Museum of Tropical Queensland, 70-102 Flinders Street, Townsville 4810, Australia 2Biodiversity Research Center, Academia Sinica, Nangang, Taipei 115, Taiwan 3Institute of Oceanography, National Taiwan Univ., Taipei 106, Taiwan 4Institute of Life Science, National Taitung Univ., Taitung 904, Taiwan (Accepted September 1, 2011) Michel Pichon, Yao-Yang Chuang, and Chaolun Allen Chen (2012) Pseudosiderastrea formosa sp. nov. (Cnidaria: Anthozoa: Scleractinia) a new coral species endemic to Taiwan. Zoological Studies 51(1): 93-98. Pseudosiderastrea formosa sp. nov. is a new siderastreid scleractinian coral collected in several localities in Taiwan. It lives on rocky substrates where it forms encrusting colonies. Results of morphological observations and molecular genetic analyses are presented. The new species is described and compared to P. tayamai and Siderastrea savignyana, and its morphological and phylogenic affinities are discussed. http://zoolstud.sinica.edu.tw/Journals/51.1/93.pdf Key words: Pseudosiderastrea formosa sp. nov., New species, Scleractinia, Siderastreid, Western Pacific Ocean. A siderastreid scleractinian coral was Pseudosiderastrea, described as P. formosa sp. collected from several localities around Taiwan nov. and nearby islands, where it is relatively rare. The specimens present some morphological similarities with Pseudosiderastrea tayamai Yabe MATERIAL AND METHODS and Sugiyama, 1935, the only species hitherto known from that genus, and with Siderastrea Specimens were collected by scuba diving at savignyana Milne Edwards and Haime, 1849, Wanlitung (21°59'48"N, 120°42'10"E) and the outlet which is the sole representative in the Indian of the 3rd nuclear power plant (21°55'51.38"N, Ocean of the genus Siderastrea de Blainville, 120°44'46.82"E) on the southeastern coast 1830.
    [Show full text]
  • DEEP SEA LEBANON RESULTS of the 2016 EXPEDITION EXPLORING SUBMARINE CANYONS Towards Deep-Sea Conservation in Lebanon Project
    DEEP SEA LEBANON RESULTS OF THE 2016 EXPEDITION EXPLORING SUBMARINE CANYONS Towards Deep-Sea Conservation in Lebanon Project March 2018 DEEP SEA LEBANON RESULTS OF THE 2016 EXPEDITION EXPLORING SUBMARINE CANYONS Towards Deep-Sea Conservation in Lebanon Project Citation: Aguilar, R., García, S., Perry, A.L., Alvarez, H., Blanco, J., Bitar, G. 2018. 2016 Deep-sea Lebanon Expedition: Exploring Submarine Canyons. Oceana, Madrid. 94 p. DOI: 10.31230/osf.io/34cb9 Based on an official request from Lebanon’s Ministry of Environment back in 2013, Oceana has planned and carried out an expedition to survey Lebanese deep-sea canyons and escarpments. Cover: Cerianthus membranaceus © OCEANA All photos are © OCEANA Index 06 Introduction 11 Methods 16 Results 44 Areas 12 Rov surveys 16 Habitat types 44 Tarablus/Batroun 14 Infaunal surveys 16 Coralligenous habitat 44 Jounieh 14 Oceanographic and rhodolith/maërl 45 St. George beds measurements 46 Beirut 19 Sandy bottoms 15 Data analyses 46 Sayniq 15 Collaborations 20 Sandy-muddy bottoms 20 Rocky bottoms 22 Canyon heads 22 Bathyal muds 24 Species 27 Fishes 29 Crustaceans 30 Echinoderms 31 Cnidarians 36 Sponges 38 Molluscs 40 Bryozoans 40 Brachiopods 42 Tunicates 42 Annelids 42 Foraminifera 42 Algae | Deep sea Lebanon OCEANA 47 Human 50 Discussion and 68 Annex 1 85 Annex 2 impacts conclusions 68 Table A1. List of 85 Methodology for 47 Marine litter 51 Main expedition species identified assesing relative 49 Fisheries findings 84 Table A2. List conservation interest of 49 Other observations 52 Key community of threatened types and their species identified survey areas ecological importanc 84 Figure A1.
    [Show full text]
  • Cold-Water Corals Online Appendix: Recent Azooxanthellate Scleractinia
    Cold-water Corals Online Appendix Phylogenetic list of 711 valid Recent azooxanthellate scleractinian species, with their junior synonyms and depth ranges Notes Type species of the genus indicated with an asterisk, valid species names in bold-type Eleven facultatively zooxanthellate species Taxa prefaced with a single square bracket are not valid species and thus are not counted Last revised September 2008 (Stephen D. Cairns) Suborder ASTROCOENIINA FAMILY POCILLOPORIDAE Gray, 1842 Madracis Milne Edwards & Haime, 1849 *asperula Milne Edwards & Haime, 1849 (facultative, H. Zibrowius, pers. comm..; 0-311 m) pharensis cf. pharensis (Heller, 1868) (facultative; 6-333 m) =?M. cf. pharensis sensu Cairns, 1991: 6 (Galápagos, 30-343 m) =?M. cf. pharensis sensu Cairns & Zibrowius, 1997: 67 (Banda Sea, 85-421 m) asanoi Yabe & Sugiyama, 1936 (110-183 m) =M. palaoensis Yabe & Sugiyama, 1936 kauaiensis Vaughan, 1907 (44-541 m) ?=singularis Rehberg, 1892 ?=interjecta Marenzeller, 1907 var. macrocalyx Vaughan, 1907 (160-260 m) hellana Milne Edwards & Haime, 1850 (46 m) myriaster (Milne Edwards & Haime, 1849) (37-1220 m) =Stylophora mirabilis Duchassaing & Michelotti, 1860 =Axohelia schrammii Pourtalès, 1874 brueggemanni (Ridley, 1881) (51-130 m) =M. scotiae Gardiner, 1913 profunda Zibrowius, 1980 (112-327 m) [sp. A =sensu Wells, 1954: 414 (Marshall I.) =cf. asperula, sensu Cairns, 1991: 5 (Galápagos, 46-64 m) =sensu Cairns & Keller, 1993:228 (SWIO, 62-160 m) =sensu Cairns, 1994: 36 (Japan, 46-110 m) =sensu Cairns & Zibrowius, 1997: 67 (Philippines, 124-208 m) Suborder FUNGIINA Superfamily FUNGIOIDEA Dana, 1846 FAMILY FUNGIACYATHIDAE Chevalier, 1987 Fungiacyathus (F.) Sars, 1872 *fragilis Sars, 1872 (200-2200 m) (not F. fragilis Keller, 1976 (junior homonym)) =Bathyactis hawaiiensis Vaughan, 1907 paliferus (Alcock, 1902) (69-823 m) =Bathyactis kikaiensis Yabe & Eguchi, 1942 (fossil) =F.
    [Show full text]
  • Patterns of Septal Biomineralization in Scleractinia Compared with Their 28S Rrna Phylogeny
    PBlackwell Publishingatterns Ltd. of septal biomineralization in Scleractinia compared with their 28S rRNA phylogeny: a dual approach for a new taxonomic framework JEAN-PIERRE CUIF, GUILLAUME LECOINTRE, CHRISTINE PERRIN, ANNIE TILLIER & SIMON TILLIER Accepted: 2 December 2002 Cuif, J.-P., Lecointre, G., Perrin, C., Tillier, A. & Tillier, S. (2003). Patterns of septal bio- mineralization in Scleractinia compared with their 28S rRNA phylogeny: a dual approach for a new taxonomic framework. — Zoologica Scripta, 32, 459–473. A molecular phylogeny of the Scleractinia is reconstructed from approximately 700 nucleo- tides of the 5′end of the 28S rDNA obtained from 40 species. A comparison of molecular phylogenic trees with biomineralization patterns of coral septa suggests that at least five clades are corroborated by both types of data. Agaricidae and Dendrophylliidae are found to be monophyletic, that is supported by microstructural data. Conversely, Faviidae and Caryophyl- liidae are found to be paraphyletic: Cladocora should be excluded from the faviids, whereas Eusmilia should be excluded from the caryophylliids. The conclusion is also supported by the positions, sizes and shapes of centres of calcification. The traditional Guyniidae are diphyletic, corroborating Stolarski’s hypothesis ‘A’. Some results from our most parsimonious trees are not strongly statistically supported but corroborated by other molecular studies and micro- structural observations. For example, in the scleractinian phylogenetic tree, there are several lines of evidence (including those from our data) to distinguish a Faviidae–Mussidae lineage and a Dendrophylliidae–Agaricidae–Poritidae–Siderastreidae lineage. From a methodological standpoint, our results suggest that co-ordinated studies creating links between biomineralization patterns and molecular phylogeny may provide an efficient working approach for a re- examination of scleractinian classification.
    [Show full text]
  • Resurrecting a Subgenus to Genus: Molecular Phylogeny of Euphyllia and Fimbriaphyllia (Order Scleractinia; Family Euphylliidae; Clade V)
    Resurrecting a subgenus to genus: molecular phylogeny of Euphyllia and Fimbriaphyllia (order Scleractinia; family Euphylliidae; clade V) Katrina S. Luzon1,2,3,*, Mei-Fang Lin4,5,6,*, Ma. Carmen A. Ablan Lagman1,7, Wilfredo Roehl Y. Licuanan1,2,3 and Chaolun Allen Chen4,8,9,* 1 Biology Department, De La Salle University, Manila, Philippines 2 Shields Ocean Research (SHORE) Center, De La Salle University, Manila, Philippines 3 The Marine Science Institute, University of the Philippines, Quezon City, Philippines 4 Biodiversity Research Center, Academia Sinica, Taipei, Taiwan 5 Department of Molecular and Cell Biology, James Cook University, Townsville, Australia 6 Evolutionary Neurobiology Unit, Okinawa Institute of Science and Technology Graduate University, Okinawa, Japan 7 Center for Natural Sciences and Environmental Research (CENSER), De La Salle University, Manila, Philippines 8 Taiwan International Graduate Program-Biodiversity, Academia Sinica, Taipei, Taiwan 9 Institute of Oceanography, National Taiwan University, Taipei, Taiwan * These authors contributed equally to this work. ABSTRACT Background. The corallum is crucial in building coral reefs and in diagnosing systematic relationships in the order Scleractinia. However, molecular phylogenetic analyses revealed a paraphyly in a majority of traditional families and genera among Scleractinia showing that other biological attributes of the coral, such as polyp morphology and reproductive traits, are underutilized. Among scleractinian genera, the Euphyllia, with nine nominal species in the Indo-Pacific region, is one of the groups Submitted 30 May 2017 that await phylogenetic resolution. Multiple genetic markers were used to construct Accepted 31 October 2017 Published 4 December 2017 the phylogeny of six Euphyllia species, namely E. ancora, E. divisa, E.
    [Show full text]
  • Deep‐Sea Coral Taxa in the U.S. Gulf of Mexico: Depth and Geographical Distribution
    Deep‐Sea Coral Taxa in the U.S. Gulf of Mexico: Depth and Geographical Distribution by Peter J. Etnoyer1 and Stephen D. Cairns2 1. NOAA Center for Coastal Monitoring and Assessment, National Centers for Coastal Ocean Science, Charleston, SC 2. National Museum of Natural History, Smithsonian Institution, Washington, DC This annex to the U.S. Gulf of Mexico chapter in “The State of Deep‐Sea Coral Ecosystems of the United States” provides a list of deep‐sea coral taxa in the Phylum Cnidaria, Classes Anthozoa and Hydrozoa, known to occur in the waters of the Gulf of Mexico (Figure 1). Deep‐sea corals are defined as azooxanthellate, heterotrophic coral species occurring in waters 50 m deep or more. Details are provided on the vertical and geographic extent of each species (Table 1). This list is adapted from species lists presented in ʺBiodiversity of the Gulf of Mexicoʺ (Felder & Camp 2009), which inventoried species found throughout the entire Gulf of Mexico including areas outside U.S. waters. Taxonomic names are generally those currently accepted in the World Register of Marine Species (WoRMS), and are arranged by order, and alphabetically within order by suborder (if applicable), family, genus, and species. Data sources (references) listed are those principally used to establish geographic and depth distribution. Only those species found within the U.S. Gulf of Mexico Exclusive Economic Zone are presented here. Information from recent studies that have expanded the known range of species into the U.S. Gulf of Mexico have been included. The total number of species of deep‐sea corals documented for the U.S.
    [Show full text]