International Journal of Biodiversity and Conservation
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The Use of Barcoding Sequences for the Construction of Phylogenetic Relationships in the Euphorbiaceae
University of Padova Department of Land, Environment Agriculture and Forestry MSc in Mediterranean Forestry and Natural Resources Management The use of barcoding sequences for the construction of phylogenetic relationships in the Euphorbiaceae Supervisor: Alessandro Vannozzi Co-supervisor: Prof. Dr. Oliver Gailing Submitted by: Bikash Kharel Matriculation No. 1177536 ACADEMIC YEAR 2017/2018 Acknowledgments This dissertation has come to this positive end through the collective efforts of several people and organizations: from rural peasants to highly academic personnel and institutions around the world. Without their mental, physical and financial support this research would not have been possible. I would like to express my gratitude to all of them who were involved directly or indirectly in this endeavor. To all of them, I express my deep appreciation. Firstly, I am thankful to Prof. Dr. Oliver Gailing for providing me the opportunity to conduct my thesis on this topic. I greatly appreciate my supervisor Alessandro Vannozzi for providing the vision regarding Forest Genetics and DNA barcoding. My cordial thanks and heartfelt gratitude goes to him whose encouragements, suggestions and comments made this research possible to shape in this form. I am also thankful to Prof. Dr. Konstantin V. Krutovsky for his guidance in each and every step of this research especially helping me with the CodonCode software and reviewing the thesis. I also want to thank Erasmus Mundus Programme for providing me with a scholarship for pursuing Master’s degree in Mediterranean Forestry and Natural Resources Management (MEDFOR) course. Besides this, I would like to thank all my professors who broadened my knowledge during the period of my study in University of Lisbon and University of Padova. -
Next-Generation Sequencing (NGS) Transcriptomes Reveal Association Of
Planta DOI 10.1007/s00425-015-2304-6 ORIGINAL ARTICLE Next-generation sequencing (NGS) transcriptomes reveal association of multiple genes and pathways contributing to secondary metabolites accumulation in tuberous roots of Aconitum heterophyllum Wall. 1 1 1 1 Tarun Pal • Nikhil Malhotra • Sree Krishna Chanumolu • Rajinder Singh Chauhan Received: 13 February 2015 / Accepted: 10 April 2015 Ó Springer-Verlag Berlin Heidelberg 2015 Abstract transcriptomes, respectively. In silico expression profiling of Main conclusion The transcriptomes of Aconitum the mevalonate/2-C-methyl-D-erythritol 4-phosphate (non- heterophyllum were assembled and characterized for mevalonate) pathway genes for aconites biosynthesis re- the first time to decipher molecular components con- vealed 4 genes HMGR (3-hydroxy-3-methylglutaryl-CoA tributing to biosynthesis and accumulation of metabo- reductase), MVK (mevalonate kinase), MVDD (mevalonate lites in tuberous roots. diphosphate decarboxylase) and HDS (1-hydroxy-2-methyl- 2-(E)-butenyl 4-diphosphate synthase) with higher expres- Aconitum heterophyllum Wall., popularly known as Atis, is a sion in root transcriptome compared to shoot transcriptome high-value medicinal herb of North-Western Himalayas. No suggesting their key role in biosynthesis of aconite alkaloids. information exists as of today on genetic factors contributing Five genes, GMPase (geranyl diphosphate mannose py- to the biosynthesis of secondary metabolites accumulating in rophosphorylase), SHAGGY, RBX1 (RING-box protein 1), tuberous roots, thereby, limiting genetic interventions to- SRF receptor kinases and b-amylase, implicated in tuberous wards genetic improvement of A. heterophyllum.Illumina root formation in other plant species showed higher levels of paired-end sequencing followed by de novo assembly yielded expression in tuberous roots compared to shoots. -
Taxonomy, Morphology and Palynology of Aegilops Vavilovii (Zhuk.) Chennav
African Journal of Agricultural Research Vol. 5(20), pp. 2841-2849, 18 October, 2010 Available online at http://www.academicjournals.org/AJAR ISSN 1991-637X ©2010 Academic Journals Full Length Research Paper Taxonomy, morphology and palynology of Aegilops vavilovii (Zhuk.) Chennav. (Poaceae: Triticeae) Evren Cabi1* Musa Doan1 Hülya Özler2, Galip Akaydin3 and Alptekin Karagöz4 1Department of Biological Sciences, Faculty of Arts and Sciences, Middle East Technical University, Ankara, Turkey. 2Department of Biology, Faculty of Arts and Sciences, Sinop University, Sinop Turkey. 3Department of Biology Education, Hacettepe University, 06800 Ankara, Turkey. 4Department of Biology, Aksaray University, Aksaray, Turkey. Accepted 23 September, 2010 Aegilops vavilovii (Zhuk.) Chennav., a rare species, was collected from Southeast Anatolia, Turkey. During the field studies of the project “Taxonomic revision of Tribe Triticeae in Turkey”, Ae. vavilovii was accidentally recollected from three localities in anliurfa and Mardin provinces in 2007 and 2008, respectively. The main objective of this study is to shed light on the diagnostic characteristics of this rare species including its morphological, palynological and micro morphological features. Moreover, an emended and expanded description, distribution, phenology and ecology of this rare species are also provided. A. vavilovii and A. crassa are naturally found in the Southeastern part of Turkey and they share similar morphological features that caused a confused taxonomy. Pollen grains of A. vavilovii are heteropolar, monoporate and spheroidal (A/B: 1,13) typically as Poaceous. However, it generally, prefers clayish loam soils that are slightly alkaline (pH 7.7) with low organic content (1.54%). Although it is a rare species with very narrow area of distribution, very few samples have been represented in ex situ collections and the species has not been involved in any in situ conservation activities to save its genetic resources in Turkey. -
Ethnobotany and Phytomedicine of the Upper Nyong Valley Forest in Cameroon
African Journal of Pharmacy and Pharmacology Vol. 3(4). pp. 144-150, April, 2009 Available online http://www.academicjournals.org/ajpp ISSN 1996-0816 © 2009 Academic Journals Full Length Research Paper Ethnobotany and phytomedicine of the upper Nyong valley forest in Cameroon T. Jiofack1*, l. Ayissi2, C. Fokunang3, N. Guedje4 and V. Kemeuze1 1Millennium Ecologic Museum, P. O Box 8038, Yaounde – Cameroon. 2Cameron Wildlife Consevation Society (CWCS – Cameroon), Cameroon. 3Faculty of Medicine and Biomedical Science, University of Yaounde I, Cameroon. 4Institute of Agronomic Research for Development, National Herbarium of Cameroon, Cameroon. Accepted 24 March, 2009 This paper presents the results of an assessment of the ethnobotanical uses of some plants recorded in upper Nyong valley forest implemented by the Cameroon wildlife conservation society project (CWCS). Forestry transects in 6 localities, followed by socio-economic study were conducted in 250 local inhabitants. As results, medicinal information on 140 plants species belonging to 60 families were recorded. Local people commonly use plant parts which included leaves, bark, seed, whole plant, stem and flower to cure many diseases. According to these plants, 8% are use to treat malaria while 68% intervenes to cure several others diseases as described on. There is very high demand for medicinal plants due to prevailing economic recession; however their prices are high as a result of prevailing genetic erosion. This report highlighted the need for the improvement of effective management strategies focusing on community forestry programmes and aims to encourage local people participation in the conservation of this forest heritage to achieve a sustainable plant biodiversity and conservation for future posterity. -
Evaluation of Agro-Morphological Diversity in Wild Relatives of Wheat Collected in Iran
J. Agr. Sci. Tech. (2017) Vol. 19: 943-956 Evaluation of Agro-Morphological Diversity in Wild Relatives of Wheat Collected in Iran A. Pour-Aboughadareh1*, J. Ahmadi1, A. A. Mehrabi2, M. Moghaddam3, and A. Etminan4 ABSTRACT In this study, a core collection of 180 Aegilops and Triticum accessions belonging to six diploid (T. boeoticum Bioss., T. urartu Gandilyan., Ae. speltoides Tausch., Ae. tauschii Coss., Ae. caudata L. and Ae. umbellulata Zhuk.), five tetraploid (T. durum, Ae. neglecta Req. ex Bertol., Ae. cylindrica Host. and Ae. crassa Boiss) and one hexaploid (T. aestivum L.) species collected from different regions of Iran were evaluated using 20 agro- morphological characters. Statistical analysis showed significant differences among accessions. The Shannon-Weaver (HʹSW) and Nei’s (HʹN) genetic diversity indices disclosed intermediate to high diversity for most characters in both Aegilops and Triticum core sets. In factor analysis, the first five components justified 82.17% of the total of agro- morphological variation. Based on measured characters, the 180 accessions were separated into two major groups by cluster analysis. Furthermore, based on the 2D-plot generated using two discriminant functions, different species were separated into six groups, so that distribution of species accorded with their genome construction. Overall, our results revealed considerable levels of genetic diversity among studied Iranian Aegilops and Triticum accessions, which can open up new avenues for rethinking the connections between wild relatives to explore valuable agronomic traits for the improvement and adaptation of wheat. Keywords: Aegilops, Multivariate analysis, Phenotypic diversity, Triticum. INTRODUCTION traits, such as disease- or pest-resistance and even yield improvement. -
Cronicon OPEN ACCESS EC AGRICULTURE Guest Editorial Aconitum Heterophyllum: a Natural Gift
Cronicon OPEN ACCESS EC AGRICULTURE Guest Editorial Aconitum heterophyllum: A Natural Gift Teena Agrawal* Assistant professor, Banasthali Vidhypeeth, Niwai, Rajasthan, India *Corresponding Author: Teena Agrawal, Assistant professor, Banasthali Vidhypeeth, Niwai, Rajasthan, India. Received: August 17, 2018; Published: October 29, 2018 Abstract The members of the ranunculaceae are the natural gift, they are used for the variety of the purposes, the genus of the family are used for the basically ornamental pursues and they are used as the medicines. Here in this review article we are presenting some of the aspect s of the genus Aconitum and basically the species termed as the Aconitum heterophyllum, the genus is known as the atiwish, atvika, ativvasa, the meaning of the terms is the counteracting position. The genus is used basically for the tuber roots, the roots are used for the ayurvedic drug termed as the ativisa, due to the contains utilization of the plants the roots are overexploited and the habitat are reduced, so the tubers and the species been declared ass the endangered, the species of the plant is distributed in the Himalayas’ and the Uttarakhand of the India, the cold climate is very suitable for the cultivation, so for the medicines purposes the species needs to be protected and it should be propagated in all over the India as well lain the other parts of the world. Keywords: Aconitum heterophyllum; Atiwish; Atvika; Ativiasa; The Endangered Himalayas’ and the Uttarakhand of the India Introduction The nature is the gift of the several kinds of the plants on the earth, the tribal peoples uses the plants for there several kinds of the needs, the folk medicines is still the basis of the many kinds of the drugs of the today uses [1-8]. -
Tree Composition and Ecological Structure of Akak Forest Area
Environment and Natural Resources Research; Vol. 9, No. 4; 2019 ISSN 1927-0488 E-ISSN 1927-0496 Published by Canadian Center of Science and Education Tree Composition and Ecological Structure of Akak Forest Area Agbor James Ayamba1,2, Nkwatoh Athanasius Fuashi1, & Ayuk Elizabeth Orock1 1 Department of Environmental Science, University of Buea, Cameroon 2 Ajemalebu Self Help, Kumba, South West Region, Cameroon Correspondence: Agbor James Ayamba, Department of Environmental Science, University of Buea, Cameroon. Tel: 237-652-079-481. E-mail: [email protected] Received: August 2, 2019 Accepted: September 11, 2019 Online Published: October 12, 2019 doi:10.5539/enrr.v9n4p23 URL: https://doi.org/10.5539/enrr.v9n4p23 Abstract Tree composition and ecological structure were assessed in Akak forest area with the objective of assessing the floristic composition and the regeneration potentials. The study was carried out between April 2018 to February 2019. A total of 49 logged stumps were selected within the Akak forest spanning a period of 5 years and 20m x 20m transects were demarcated. All plants species <1cm and above were identified and recorded. Results revealed that a total of 5239 individuals from 71 families, 216 genera and 384species were identified in the study area. The maximum plants species was recorded in the year 2015 (376 species). The maximum number of species and regeneration potentials was found in the family Fabaceae, (99 species) and (31) respectively. Baphia nitida, Musanga cecropioides and Angylocalyx pynaertii were the most dominant plants specie in the years 2013, 2015 and 2017 respectively. The year 2017 depicts the highest Simpson diversity with value of (0.989) while the year 2015 show the highest Simpson dominance with value of (0.013). -
Phylogénie Et Évolution Du Genre Frankia Imen Nouioui
Phylogénie et évolution du genre Frankia Imen Nouioui To cite this version: Imen Nouioui. Phylogénie et évolution du genre Frankia. Biologie végétale. Université Claude Bernard - Lyon I, 2014. Français. NNT : 2014LYO10087. tel-01089349 HAL Id: tel-01089349 https://tel.archives-ouvertes.fr/tel-01089349 Submitted on 1 Dec 2014 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. N° d’ordre 87 – 2014 Année 2014 THÈSE DE L’UNIVERSITE DE LYON Délivrée par L’UNIVERSITE CLAUDE BERNARD LYON 1 ECOLE DOCTORALE : Evolution Ecosystèmes Microbiologie Modélisation DIPLOME DE DOCTORAT (arrêté du 7 Août 2006) Soutenue publiquement le 23 juin 2014 par Melle Imen NOUIOUI Phylogénie et Évolution du genre Frankia Directeurs de thèse : Maria P. FERNANDEZ & Maher GTARI Jury : M. Abdellatif Boudabous Professeur à l’Université Tunis El Manar Président M. Ridha Mhamdi Professeur au Centre de Biotechnologie de Borj Cédria Rapporteur M. Sergio Svistoonoff Chargé de recherche à l’IRD, Montpellier Rapporteur M. Maher Gtari Professeur à l’Université de Carthage Examinateur Mme. Maria -
Afrostyrax Lepidophyllus Mildbr
Afrostyrax lepidophyllus Mildbr. Identifiants : 844/afrlep Association du Potager de mes/nos Rêves (https://lepotager-demesreves.fr) Fiche réalisée par Patrick Le Ménahèze Dernière modification le 26/09/2021 Classification phylogénétique : Clade : Angiospermes ; Clade : Dicotylédones vraies ; Clade : Rosidées ; Clade : Fabidées ; Ordre : Oxalidales ; Famille : Huaceae ; Classification/taxinomie traditionnelle : Règne : Plantae ; Sous-règne : Tracheobionta ; Division : Magnoliophyta ; Classe : Magnoliopsida ; Ordre : Violales ; Famille : Huaceae ; Genre : Afrostyrax ; Synonymes : Afrostyrax leptidophyllus (erreur? (qp*)) ; Nom(s) anglais, local(aux) et/ou international(aux) : country onion, garlic bark, tengulu , Arbre a ail, Fulum, Ikang, Gimba, Sie ; Rapport de consommation et comestibilité/consommabilité inférée (partie(s) utilisable(s) et usage(s) alimentaire(s) correspondant(s)) : Graines - épice{{{0(+x)) Les feuilles, l'écorce et les graines sont utilisées comme épice. Ils ont un goût d'ail Partie testée : graines - épices{{{0(+x) (traduction automatique) Original : Seeds - spice{{{0(+x) Taux d'humidité Énergie (kj) Énergie (kcal) Protéines (g) Pro- Vitamines C (mg) Fer (mg) Zinc (mg) vitamines A (µg) 0 0 0 0 0 0 0 néant, inconnus ou indéterminés. Illustration(s) (photographie(s) et/ou dessin(s)): Page 1/2 Autres infos : dont infos de "FOOD PLANTS INTERNATIONAL" : Statut : Ils sont utilisés comme épice dans la plupart des recettes au Cameroun{{{0(+x) (traduction automatique). Original : They are used as a spice in most recipes in Cameroon{{{0(+x). Distribution : C'est une plante tropicale{{{0(+x) (traduction automatique). Original : It is a tropical plant{{{0(+x). Localisation : Afrique, Cameroun *, Afrique centrale, République centrafricaine, RCA, RD Congo, Congo R, Gabon, Ghana, Afrique de l'Ouest{{{0(+x) (traduction automatique). -
2. ACER Linnaeus, Sp. Pl. 2: 1054. 1753. 枫属 Feng Shu Trees Or Shrubs
Fl. China 11: 516–553. 2008. 2. ACER Linnaeus, Sp. Pl. 2: 1054. 1753. 枫属 feng shu Trees or shrubs. Leaves mostly simple and palmately lobed or at least palmately veined, in a few species pinnately veined and entire or toothed, or pinnately or palmately 3–5-foliolate. Inflorescence corymbiform or umbelliform, sometimes racemose or large paniculate. Sepals (4 or)5, rarely 6. Petals (4 or)5, rarely 6, seldom absent. Stamens (4 or 5 or)8(or 10 or 12); filaments distinct. Carpels 2; ovules (1 or)2 per locule. Fruit a winged schizocarp, commonly a double samara, usually 1-seeded; embryo oily or starchy, radicle elongate, cotyledons 2, green, flat or plicate; endosperm absent. 2n = 26. About 129 species: widespread in both temperate and tropical regions of N Africa, Asia, Europe, and Central and North America; 99 species (61 endemic, three introduced) in China. Acer lanceolatum Molliard (Bull. Soc. Bot. France 50: 134. 1903), described from Guangxi, is an uncertain species and is therefore not accepted here. The type specimen, in Berlin (B), has been destroyed. Up to now, no additional specimens have been found that could help clarify the application of this name. Worldwide, Japanese maples are famous for their autumn color, and there are over 400 cultivars. Also, many Chinese maple trees have beautiful autumn colors and have been cultivated widely in Chinese gardens, such as Acer buergerianum, A. davidii, A. duplicatoserratum, A. griseum, A. pictum, A. tataricum subsp. ginnala, A. triflorum, A. truncatum, and A. wilsonii. In winter, the snake-bark maples (A. davidii and its relatives) and paper-bark maple (A. -
University of Groningen Ineffective Frankia in Wet Alder Soils Wolters
University of Groningen Ineffective Frankia in wet alder soils Wolters, Diederick Johannes IMPORTANT NOTE: You are advised to consult the publisher's version (publisher's PDF) if you wish to cite from it. Please check the document version below. Document Version Publisher's PDF, also known as Version of record Publication date: 1998 Link to publication in University of Groningen/UMCG research database Citation for published version (APA): Wolters, D. J. (1998). Ineffective Frankia in wet alder soils. s.n. Copyright Other than for strictly personal use, it is not permitted to download or to forward/distribute the text or part of it without the consent of the author(s) and/or copyright holder(s), unless the work is under an open content license (like Creative Commons). The publication may also be distributed here under the terms of Article 25fa of the Dutch Copyright Act, indicated by the “Taverne” license. More information can be found on the University of Groningen website: https://www.rug.nl/library/open-access/self-archiving-pure/taverne- amendment. Take-down policy If you believe that this document breaches copyright please contact us providing details, and we will remove access to the work immediately and investigate your claim. Downloaded from the University of Groningen/UMCG research database (Pure): http://www.rug.nl/research/portal. For technical reasons the number of authors shown on this cover page is limited to 10 maximum. Download date: 30-09-2021 Chapter 1 GENERAL INTRODUCTION 1 General introduction NITROGEN-FIXING SYMBIOSES In most terrestrial plant-dominated ecosystems, the limiting nutrient factors for plant growth are nitrogen (N), phosphorous (P), or potassium (K). -
Characterization of the Wild Trees and Shrubs in the Egyptian Flora
10 Egypt. J. Bot. Vol. 60, No. 1, pp. 147-168 (2020) Egyptian Journal of Botany http://ejbo.journals.ekb.eg/ Characterization of the Wild Trees and Shrubs in the Egyptian Flora Heba Bedair#, Kamal Shaltout, Dalia Ahmed, Ahmed Sharaf El-Din, Ragab El- Fahhar Botany Department, Faculty of Science, Tanta University, 31527, Tanta, Egypt. HE present study aims to study the floristic characteristics of the native trees and shrubs T(with height ≥50cm) in the Egyptian flora. The floristic characteristics include taxonomic diversity, life and sex forms, flowering activity, dispersal types,economic potential, threats and national and global floristic distributions. Nine field visits were conducted to many locations all over Egypt for collecting trees and shrubs. From each location, plant and seed specimens were collected from different habitats. In present study 228 taxa belonged to 126 genera and 45 families were recorded, including 2 endemics (Rosa arabica and Origanum syriacum subsp. sinaicum) and 5 near-endemics. They inhabit 14 habitats (8 natural and 6 anthropogenic). Phanerophytes (120 plants) are the most represented life form, followed by chamaephytes (100 plants). Bisexuals are the most represented. Sarcochores (74 taxa) are the most represented dispersal type, followed by ballochores (40 taxa). April (151 taxa) and March (149 taxa) have the maximum flowering plants. Small geographic range - narrow habitat - non abundant plants are the most represented rarity form (180 plants). Deserts are the most rich regions with trees and shrubs (127 taxa), while Sudano-Zambezian (107 taxa) and Saharo-Arabian (98 taxa) was the most. Medicinal plants (154 taxa) are the most represented good, while salinity tolerance (105 taxa) was the most represented service and over-collecting and over-cutting was the most represented threat.