In a Three-Dimensional Reconstructed Human Epidermis Filaggrin-2 Is Essential for Proper Cornification
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Curcumin Effect on Bleomycin-Induced Pulmonary Fibrosis in Mus Musculus
JITV Vol. 20 No 2 Th. 2015: 148-157 Curcumin Effect on Bleomycin-Induced Pulmonary Fibrosis in Mus musculus Rahmi A1, Setiyono A2, Juniantito V2 1Graduate School of Animal Biomedical Science, Faculty of Veterinary Medicine, Bogor Agricultural University 2Division of Pathology, Department of Clinic, Reproduction and Pathology, Faculty of Veterinary Medicine, Bogor Agricultural University E-mail: [email protected]; [email protected] (received 31-03-2015; revised 29-05-2015; accepted 04-06-2015) ABSTRAK Rahmi A, Setiyono A, Juniantito V. 2015. Pengaruh kurkumin terhadap fibrosis paru-paru akibat aplikasi bleomisin pada Mus musculus. JITV 20(2): 148-157. DOI: http://dx.doi.org/10.14334/jitv.v20i2.1169 Kurkumin merupakan bahan aktif utama dari tanaman kunyit (Curcuma longa) diketahui memiliki aktivitas sebagai anti- oksidan dan anti-inflamasi. Bleomisin merupakan salah satu obat anti-kanker yang dapat menginduksi fibrosis paru-paru pada manusia dan hewan. Tujuan penelitian ini adalah untuk mengetahui efek biologis kurkumin pada fibrosis paru-paru yang diinduksi bleomisin pada mencit. Sebanyak 16 ekor mencit galur ddy dibagi dalam 4 kelompok perlakuan: (i) kontrol, 100 µl aquadest steril diinjeksikan secara SC, (ii) bleomisin (BLM), 100 µl bleomisin konsentrasi 1 mg/ml diinjeksikan secara SC, (iii) kurkumin (CMN), 100 µl aquadest steril diinjeksikan secara SC dan 100 mg/kg BB kurkumin dalam 0,5% carboxymethylcellulose (CMC) yang diinjeksikan secara IP, dan (iv) BLM+CMN, 100 µl bleomisin dengan konsentrasi 1 mg/ml diinjeksikan secara SC dan 100 mg/kg BB kurkumin dalam 0,5% CMC diinjeksikan secara IP. Semua perlakuan diberikan setiap hari selama 4 minggu. Organ paru-paru dikoleksi dalam 10% buffered neutral formalin (BNF). -
(12) Patent Application Publication (10) Pub. No.: US 2014/0010901 A1 Hibino Et Al
US 20140010901A1 (19) United States (12) Patent Application Publication (10) Pub. No.: US 2014/0010901 A1 Hibino et al. (43) Pub. Date: Jan. 9, 2014 (54) BLEOMYCIN HYDROLASE PRODUCTION Publication Classification PROMOTOR (51) Int. Cl. A61E36/756 (2006.01) A63L/047 (2006.01) (75) Inventors: Toshihiko Hibino, Yokohama-shi (JP); A 6LX3/97 (2006.01) Shoko Yamada, Yokohama-shi (JP); A61E36/53 (2006.01) Hidekazu Fukushima, Yokohama-shi A61E36/23 (2006.01) (JP) (52) U.S. Cl. CPC ............... A61K 36/756 (2013.01); A61K 36/53 (2013.01); A61 K36/23 (2013.01); A61 K (73) Assignee: Shiseido Company, Ltd. 31/197 (2013.01); A61 K3I/047 (2013.01) USPC ........... 424/745; 424/769; 424/773; 424/777; (21) Appl. No.: 14/004,977 514/562; 514/738 (57) ABSTRACT (22) PCT Filed: Mar. 14, 2012 Provided is a novel bleomycin hydrolase production pro moter. (86). PCT No.: PCT/UP2012/056581 Provided is a bleomycin hydrolase production promoter, S371 (c)(1), natural moisturizing factor production promoter, and dry skin (2), (4) Date: Sep. 13, 2013 remedy, comprising as an active ingredient thereof one or a plurality of ingredients selected from the group consisting of (30) Foreign Application Priority Data chestnut rose extract, angelica root extract, cork tree bark extract, lamium album extract, rosemary extract, benzene Mar. 15, 2011 (JP) ................................. 2011-057126 sulfonyl GABA and erythritol. Patent Application Publication Jan. 9, 2014 Sheet 1 of 23 US 2014/0010901 A1 Fig.1 SPECIMEN 1 SPEC MEN 2 2 5 10 20 2 5 10 20 NUMBER OF TIMES OF TAPE STRIPPING Fig.2 SPECIMEN T N A M T, A: SUBJECTS NOT HAVING DRY SKIN N: SUBJECT HAVING SOMEWHAT DRY SKIN, MSUBJECT HAVING DRY SKN Patent Application Publication Jan. -
Calpain-10 and Adiponectin Gene Polymorphisms in Korean Type 2 Diabetes Patients
Original Endocrinol Metab 2018;33:364-371 https://doi.org/10.3803/EnM.2018.33.3.364 Article pISSN 2093-596X · eISSN 2093-5978 Calpain-10 and Adiponectin Gene Polymorphisms in Korean Type 2 Diabetes Patients Ji Sun Nam1,2, Jung Woo Han1, Sang Bae Lee1, Ji Hong You1, Min Jin Kim1, Shinae Kang1,2, Jong Suk Park1,2, Chul Woo Ahn1,2 1Department of Internal Medicine, 2Severance Institute for Vascular and Metabolic Research, Yonsei University College of Medicine, Seoul, Korea Background: Genetic variations in calpain-10 and adiponectin gene are known to influence insulin secretion and resistance in type 2 diabetes mellitus. Recently, several single nucleotide polymorphisms (SNPs) in calpain-10 and adiponectin gene have been report- ed to be associated with type 2 diabetes and various metabolic derangements. We investigated the associations between specific cal- pain-10 and adiponectin gene polymorphisms and Korean type 2 diabetes patients. Methods: Overall, 249 type 2 diabetes patients and 131 non-diabetic control subjects were enrolled in this study. All the subjects were genotyped for SNP-43 and -63 of calpain-10 gene and G276T and T45G frequencies of the adiponectin gene. The clinical char- acteristics and measure of glucose metabolism were compared within these genotypes. Results: Among calpain-10 polymorphisms, SNP-63 T/T were more frequent in diabetes patients, and single SNP-63 increases the susceptibility to type 2 diabetes. However, SNP-43 in calpain-10 and T45G and intron G276T in adiponectin gene were not signifi- cantly associated with diabetes, insulin resistance, nor insulin secretion. Conclusion: Variations in calpain-10, SNP-63 seems to increase the susceptibility to type 2 diabetes in Koreans while SNP-43 and adiponectin SNP-45, -276 are not associated with impaired glucose metabolism. -
Μ-CALPAIN GENE KNOCKDOWN of MUSCLE SATELLITE CELLS USING PSILENCER VECTOR Muthuraman Pandurangan, Hoa V
µ-CALPAIN GENE KNOCKDOWN OF MUSCLE SATELLITE CELLS USING PSILENCER VECTOR Muthuraman Pandurangan, Hoa V. Ba, Dawoon Jeong, Beom-Young Park1, Soo-Hyun Cho1, Inho Hwang* Department of Animal Science and Institute of Rare Earth for Biological Aplication, Chonbuk National University, Jeonju, 561- 756, Korea 1Quality control and utilization of animal products division, National Institute of Animal Science, Suwon 441-706, South Korea Abstract – This study was designed to find the key called μ- and m-) which are the best-characterized role of μ-calpain and caspases using RNA calpains and calpain 3 (also called p94) which is interference mediated silencing of μ-calpain and highly expressed in this tissue. However, since caspase 9 during satellite cell proliferation. For this conventional inhibitors used for the studies of the experiment, four separate siRNA sequences were functions of these enzymes lack specificity, the screened for their ability to inhibit μ-calpain gene expression. Following optimizing the transfection individual physiological function and biochemical conditions for cell number, volume of transfection mechanism of these three isoforms, especially μ- agent used and the appropriate concentration of calpain, are not clear (3). In contrast, RNA each siRNA, quantitative real-time PCR were used interference (RNAi) has a great potential to to assess the level of inhibition of gene expression distinguish the functions of each member in a achieved by all siRNA sequences used. CAPN1, closely related gene family or to selectively target caspase 3, caspase 7, caspase 9, Hsp27, Hsp70 and a mutant gene, especially to study the functions of Hsp90 mRNA expression were quantified in a particular isoform. -
Biomarkers, Master Regulators and Genomic Fabric Remodeling in a Case of Papillary Thyroid Carcinoma
G C A T T A C G G C A T genes Article Biomarkers, Master Regulators and Genomic Fabric Remodeling in a Case of Papillary Thyroid Carcinoma Dumitru A. Iacobas Personalized Genomics Laboratory, CRI Center for Computational Systems Biology, Roy G Perry College of Engineering, Prairie View A&M University, Prairie View, TX 77446, USA; [email protected]; Tel.: +1-936-261-9926 Received: 1 August 2020; Accepted: 1 September 2020; Published: 2 September 2020 Abstract: Publicly available (own) transcriptomic data have been analyzed to quantify the alteration in functional pathways in thyroid cancer, establish the gene hierarchy, identify potential gene targets and predict the effects of their manipulation. The expression data have been generated by profiling one case of papillary thyroid carcinoma (PTC) and genetically manipulated BCPAP (papillary) and 8505C (anaplastic) human thyroid cancer cell lines. The study used the genomic fabric paradigm that considers the transcriptome as a multi-dimensional mathematical object based on the three independent characteristics that can be derived for each gene from the expression data. We found remarkable remodeling of the thyroid hormone synthesis, cell cycle, oxidative phosphorylation and apoptosis pathways. Serine peptidase inhibitor, Kunitz type, 2 (SPINT2) was identified as the Gene Master Regulator of the investigated PTC. The substantial increase in the expression synergism of SPINT2 with apoptosis genes in the cancer nodule with respect to the surrounding normal tissue (NOR) suggests that SPINT2 experimental overexpression may force the PTC cells into apoptosis with a negligible effect on the NOR cells. The predictive value of the expression coordination for the expression regulation was validated with data from 8505C and BCPAP cell lines before and after lentiviral transfection with DDX19B. -
Calcium Mechanisms in Limb-Girdle Muscular Dystrophy with CAPN3 Mutations
International Journal of Molecular Sciences Review Calcium Mechanisms in Limb-Girdle Muscular Dystrophy with CAPN3 Mutations Jaione Lasa-Elgarresta 1,2, Laura Mosqueira-Martín 1,2, Neia Naldaiz-Gastesi 1,2, Amets Sáenz 1,2, Adolfo López de Munain 1,2,3,4,* and Ainara Vallejo-Illarramendi 1,2,5,* 1 Biodonostia, Neurosciences Area, Group of Neuromuscular Diseases, 20014 San Sebastian, Spain; [email protected] (J.L.-E.); [email protected] (L.M.-M.); [email protected] (N.N.-G.); [email protected] (A.S.) 2 CIBERNED, Instituto de Salud Carlos III, Ministry of Science, Innovation and Universities, 28031 Madrid, Spain 3 Departmento de Neurosciencias, Universidad del País Vasco UPV/EHU, 20014 San Sebastian, Spain 4 Osakidetza Basque Health Service, Donostialdea Integrated Health Organisation, Neurology Department, 20014 San Sebastian, Spain 5 Grupo Neurociencias, Departmento de Pediatría, Hospital Universitario Donostia, UPV/EHU, 20014 San Sebastian, Spain * Correspondence: [email protected] (A.L.d.M.); [email protected] (A.V.-I.); Tel.: +34-943-006294 (A.L.d.M.); +34-943-006128 (A.V.-I.) Received: 4 August 2019; Accepted: 11 September 2019; Published: 13 September 2019 Abstract: Limb-girdle muscular dystrophy recessive 1 (LGMDR1), previously known as LGMD2A, is a rare disease caused by mutations in the CAPN3 gene. It is characterized by progressive weakness of shoulder, pelvic, and proximal limb muscles that usually appears in children and young adults and results in loss of ambulation within 20 years after disease onset in most patients. The pathophysiological mechanisms involved in LGMDR1 remain mostly unknown, and to date, there is no effective treatment for this disease. -
Biochemical Investigation of the Ubiquitin Carboxyl-Terminal Hydrolase Family" (2015)
Purdue University Purdue e-Pubs Open Access Dissertations Theses and Dissertations Spring 2015 Biochemical investigation of the ubiquitin carboxyl- terminal hydrolase family Joseph Rashon Chaney Purdue University Follow this and additional works at: https://docs.lib.purdue.edu/open_access_dissertations Part of the Biochemistry Commons, Biophysics Commons, and the Molecular Biology Commons Recommended Citation Chaney, Joseph Rashon, "Biochemical investigation of the ubiquitin carboxyl-terminal hydrolase family" (2015). Open Access Dissertations. 430. https://docs.lib.purdue.edu/open_access_dissertations/430 This document has been made available through Purdue e-Pubs, a service of the Purdue University Libraries. Please contact [email protected] for additional information. *UDGXDWH6FKRRO)RUP 8SGDWHG PURDUE UNIVERSITY GRADUATE SCHOOL Thesis/Dissertation Acceptance 7KLVLVWRFHUWLI\WKDWWKHWKHVLVGLVVHUWDWLRQSUHSDUHG %\ Joseph Rashon Chaney (QWLWOHG BIOCHEMICAL INVESTIGATION OF THE UBIQUITIN CARBOXYL-TERMINAL HYDROLASE FAMILY Doctor of Philosophy )RUWKHGHJUHHRI ,VDSSURYHGE\WKHILQDOH[DPLQLQJFRPPLWWHH Chittaranjan Das Angeline Lyon Christine A. Hrycyna George M. Bodner To the best of my knowledge and as understood by the student in the Thesis/Dissertation Agreement, Publication Delay, and Certification/Disclaimer (Graduate School Form 32), this thesis/dissertation adheres to the provisions of Purdue University’s “Policy on Integrity in Research” and the use of copyrighted material. Chittaranjan Das $SSURYHGE\0DMRU3URIHVVRU V BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB $SSURYHGE\R. E. Wild 04/24/2015 +HDGRIWKH'HSDUWPHQW*UDGXDWH3URJUDP 'DWH BIOCHEMICAL INVESTIGATION OF THE UBIQUITIN CARBOXYL-TERMINAL HYDROLASE FAMILY Dissertation Submitted to the Faculty of Purdue University by Joseph Rashon Chaney In Partial Fulfillment of the Requirements for the Degree of Doctor of Philosophy May 2015 Purdue University West Lafayette, Indiana ii All of this I dedicate wife, Millicent, to my faithful and beautiful children, Josh and Caleb. -
Calpain-2 Participates in the Process of Calpain-1 Inactivation
Bioscience Reports (2020) 40 BSR20200552 https://doi.org/10.1042/BSR20200552 Research Article Calpain-2 participates in the process of calpain-1 inactivation Fumiko Shinkai-Ouchi1, Mayumi Shindo2, Naoko Doi1, Shoji Hata1 and Yasuko Ono1 1Calpain Project, Department of Basic Medical Sciences, Tokyo Metropolitan Institute of Medical Science (TMiMS), 2-1-6 Kamikitazawa, Setagaya-ku, Tokyo 156- 8506, Japan; 2Center for Basic Technology Research, Tokyo Metropolitan Institute of Medical Science (TMiMS), 2-1-6 Kamikitazawa, Setagaya-ku, Tokyo 156- 8506, Japan Downloaded from http://portlandpress.com/bioscirep/article-pdf/40/11/BSR20200552/896871/bsr-2020-0552.pdf by guest on 28 September 2021 Correspondence: Yasuko Ono ([email protected]) Calpain-1 and calpain-2 are highly structurally similar isoforms of calpain. The calpains, a family of intracellular cysteine proteases, cleave their substrates at specific sites, thus modifying their properties such as function or activity. These isoforms have long been considered to function in a redundant or complementary manner, as they are both ubiq- uitously expressed and activated in a Ca2+- dependent manner. However, studies using isoform-specific knockout and knockdown strategies revealed that each calpain species carries out specific functions in vivo. To understand the mechanisms that differentiate calpain-1 and calpain-2, we focused on the efficiency and longevity of each calpain species after activation. Using an in vitro proteolysis assay of troponin T in combination with mass spectrometry, we revealed distinctive aspects of each isoform. Proteolysis mediated by calpain-1 was more sustained, lasting as long as several hours, whereas proteolysis me- diated by calpain-2 was quickly blunted. -
The Pennsylvania State University the Graduate School Department of Biology CONTRIBUTION of TRANSPOSABLE ELEMENTS to GENOMIC
The Pennsylvania State University The Graduate School Department of Biology CONTRIBUTION OF TRANSPOSABLE ELEMENTS TO GENOMIC NOVELTY: A COMPUTATIONAL APPROACH A Thesis in Biology by Valer Gotea © 2007 Valer Gotea Submitted in Partial Fulfillment of the Requirements for the Degree of Doctor of Philosophy August 2007 The thesis of Valer Gotea was reviewed and approved* by the following: Wojciech Makałowski Associate Professor of Biology Thesis Advisor Chair of Committee Stephen W. Schaeffer Associate Professor of Biology Kateryna D. Makova Assistant Professor of Biology Piotr Berman Associate Professor of Computer Science and Engineering Douglas R. Cavener Professor of Biology Head of the Department of Biology *Signatures are on file in the Graduate School iii ABSTRACT Transposable elements (TEs) are DNA entities that have the ability to move and multiply within genomes, and thus have the ability to influence their function and evolution. Their impact on the genomes of different species varies greatly, yet they made an important contribution to eukaryotic genomes, including to those of vertebrate and mammalian species. Almost half of the human genome itself originated from various TEs, few of them still being active. Often times, TEs can disrupt the function of certain genes and generate disease phenotypes, but over long evolutionary times they can also offer evolutionary advantages to their host genome. For example, they can serve as recombination hotspots, they can influence gene regulation, or they can even contribute to the sequence of protein coding genes. Here I made use of multiple computational tools to investigate in more detail a few of these aspects. Starting with a set of well characterized proteins to complement inferences made at the level of transcripts, I investigated the contribution of TEs to protein coding sequences. -
Families and Clans of Cysteine Peptidases
Families and clans of eysteine peptidases Alan J. Barrett* and Neil D. Rawlings Peptidase Laboratory. Department of Immunology, The Babraham Institute, Cambridge CB2 4AT,, UK. Summary The known cysteine peptidases have been classified into 35 sequence families. We argue that these have arisen from at least five separate evolutionary origins, each of which is represented by a set of one or more modern-day families, termed a clan. Clan CA is the largest, containing the papain family, C1, and others with the Cys/His catalytic dyad. Clan CB (His/Cys dyad) contains enzymes from RNA viruses that are distantly related to chymotrypsin. The peptidases of clan CC are also from RNA viruses, but have papain-like Cys/His catalytic sites. Clans CD and CE contain only one family each, those of interleukin-ll3-converting enz3wne and adenovirus L3 proteinase, respectively. A few families cannot yet be assigned to clans. In view of the number of separate origins of enzymes of this type, one should be cautious in generalising about the catalytic mechanisms and other properties of cysteine peptidases as a whole. In contrast, it may be safer to gener- alise for enzymes within a single family or clan. Introduction Peptidases in which the thiol group of a cysteine residue serves as the nucleophile in catalysis are defined as cysteine peptidases. In all the cysteine peptidases discovered so far, the activity depends upon a catalytic dyad, the second member of which is a histidine residue acting as a general base. The majority of cysteine peptidases are endopeptidases, but some act additionally or exclusively as exopeptidases. -
A Genomic Analysis of Rat Proteases and Protease Inhibitors
A genomic analysis of rat proteases and protease inhibitors Xose S. Puente and Carlos López-Otín Departamento de Bioquímica y Biología Molecular, Facultad de Medicina, Instituto Universitario de Oncología, Universidad de Oviedo, 33006-Oviedo, Spain Send correspondence to: Carlos López-Otín Departamento de Bioquímica y Biología Molecular Facultad de Medicina, Universidad de Oviedo 33006 Oviedo-SPAIN Tel. 34-985-104201; Fax: 34-985-103564 E-mail: [email protected] Proteases perform fundamental roles in multiple biological processes and are associated with a growing number of pathological conditions that involve abnormal or deficient functions of these enzymes. The availability of the rat genome sequence has opened the possibility to perform a global analysis of the complete protease repertoire or degradome of this model organism. The rat degradome consists of at least 626 proteases and homologs, which are distributed into five catalytic classes: 24 aspartic, 160 cysteine, 192 metallo, 221 serine, and 29 threonine proteases. Overall, this distribution is similar to that of the mouse degradome, but significatively more complex than that corresponding to the human degradome composed of 561 proteases and homologs. This increased complexity of the rat protease complement mainly derives from the expansion of several gene families including placental cathepsins, testases, kallikreins and hematopoietic serine proteases, involved in reproductive or immunological functions. These protease families have also evolved differently in the rat and mouse genomes and may contribute to explain some functional differences between these two closely related species. Likewise, genomic analysis of rat protease inhibitors has shown some differences with the mouse protease inhibitor complement and the marked expansion of families of cysteine and serine protease inhibitors in rat and mouse with respect to human. -
Knockdown of Filaggrin in a Three-Dimensional Reconstructed
ORIGINAL ARTICLE Knockdown of Filaggrin in a Three-Dimensional Reconstructed Human Epidermis Impairs Keratinocyte Differentiation Vale´rie Pendaries1,2,3, Jeremy Malaisse4, Laurence Pellerin1,2,3, Marina Le Lamer1,2,3, Rachida Nachat1,2,3,8, Sanja Kezic5, Anne-Marie Schmitt6,CarlePaul1,2,3,7, Yves Poumay4, Guy Serre1,2,3 and Michel Simon1,2,3 Atopic dermatitis is a chronic inflammatory skin disorder characterized by defects in the epidermal barrier and keratinocyte differentiation. The expression of filaggrin, a protein thought to have a major role in the function of the epidermis, is downregulated. However, the impact of this deficiency on keratinocytes is not really known. This was investigated using lentivirus-mediated small-hairpin RNA interference in a three-dimensional recon- structed human epidermis (RHE) model, in the absence of other cell types than keratinocytes. Similar to what is known for atopic skin, the experimental filaggrin downregulation resulted in hypogranulosis, a disturbed corneocyte intracellular matrix, reduced amounts of natural moisturizing factor components, increased permeability and UV-B sensitivity of the RHE, and impaired keratinocyte differentiation at the messenger RNA and protein levels. In particular, the amounts of two filaggrin-related proteins and one protease involved in the degradation of filaggrin, bleomycin hydrolase, were lower. In addition, caspase-14 activation was reduced. These results demonstrate the importance of filaggrin for the stratum corneum properties/functions. They indicate that filaggrin downregulation in the epidermis of atopic patients, either acquired or innate, may be directly responsible for some of the disease-related alterations in the epidermal differentiation program and epidermal barrier function. Journal of Investigative Dermatology advance online publication, 10 July 2014; doi:10.1038/jid.2014.259 INTRODUCTION a secondary local epidermal barrier disruption.