Re-Classification of Pheopolykrikos Hartmannii As Polykrikos
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Patrons De Biodiversité À L'échelle Globale Chez Les Dinoflagellés
! ! ! ! ! !"#$%&'%&'()!(*+!&'%&,-./01%*$0!2&30%**%&%!&4+*0%&).*0%& ! 0$'1&2(&3'!4!5&6(67&)!#2%&8)!9!:16()!;6136%2()!;&<)%=&3'!>?!@&<283! ! A%'=)83')!$2%! 45&/678&,9&:9;<6=! ! A6?% 6B3)8&% ()!7%2>) >) '()!%.*&>9&?-./01%*$0!2&30%**%&%!&4+*0%&).*0%! ! ! 0?C)3!>)!(2!3DE=)!4! ! @!!"#$%&'()*(+,%),-*$',#.(/(01.23*00*(40%+"0*(23*5(0*'( >A86B?7C9??D;&E?78<=68AFG9;&H7IA8;! ! ! ! 06?3)8?)!()!4!.+!FGH0!*+./! ! ;)<283!?8!C?%I!16#$6='!>)!4! ! 'I5&*6J987&$=9I8J!0&%!G(&=3)%!K2%>I!L6?8>23&68!M6%!N1)28!01&)81)!O0GKLN0PJ!A(I#6?3D!Q!H6I2?#)RS8&!! !!H2$$6%3)?%! 3I6B5&K78&37J?6J;LAJ!S8&<)%=&3'!>)!T)8E<)!Q!0?&==)! !!H2$$6%3)?%! 'I5&47IA87&468=I9;6IJ!032U&68)!V66(67&12!G8368!;6D%8!6M!W2$()=!Q!"32(&)! XY2#&823)?%! 3I6B5&,7I;&$=9HH788J!SAFZ,ZWH0!0323&68!V66(67&[?)!>)!@&(()M%281D)R=?%RF)%!Q!L%281)! XY2#&823)?%! 'I5&*7BB79?9&$A786J!;\WXZN,A)(276=J!"LHXFXH!!"#$%"&'"&(%")$*&+,-./0#1&Q!L%281)!!! !!!Z6R>&%)13)?%!>)!3DE=)! 'I5&)6?6HM78&>9&17IC7;J&SAFZ,ZWH0!0323&68!5&6(67&[?)!>)!H6=16MM!Q!L%281)! ! !!!!!!!!!;&%)13)?%!>)!3DE=)! ! ! ! "#$%&#'!()!*+,+-,*+./! ! ! ! ! ! ! ! ! ! ! ! ! ! ! ! ! ! ! ! ! ! ! ! ! ! ! ! ! ! ! ! ! ! ! ! ! ! ! ! ! ! ! ! ! ! ! ! ! ! ! ! ! ! ! ! ! ! ! ! Remerciements* ! Remerciements* A!l'issue!de!ce!travail!de!recherche!et!de!sa!rédaction,!j’ai!la!preuve!que!la!thèse!est!loin!d'être!un!travail! solitaire.! En! effet,! je! n'aurais! jamais! pu! réaliser! ce! travail! doctoral! sans! le! soutien! d'un! grand! nombre! de! personnes!dont!l’amitié,!la!générosité,!la!bonne!humeur%et%l'intérêt%manifestés%à%l'égard%de%ma%recherche%m'ont% permis!de!progresser!dans!cette!phase!délicate!de!«!l'apprentiGchercheur!».! -
Trait Changes Induced by Species Interactions in Two Phenotypically Distinct Strains of a Marine Dinoflagellate
The ISME Journal (2016) 10, 2658–2668 © 2016 International Society for Microbial Ecology All rights reserved 1751-7362/16 www.nature.com/ismej ORIGINAL ARTICLE Trait changes induced by species interactions in two phenotypically distinct strains of a marine dinoflagellate Sylke Wohlrab, Urban Tillmann, Allan Cembella and Uwe John Alfred Wegener Institute, Helmholtz Centre for Polar and Marine Research, Section Ecological Chemistry, Bremerhaven, Germany Populations of the toxigenic marine dinoflagellate Alexandrium are composed of multiple genotypes that display phenotypic variation for traits known to influence top-down processes, such as the ability to lyse co-occurring competitors and prospective grazers. We performed a detailed molecular analysis of species interactions to determine how different genotypes perceive and respond to other species. In a controlled laboratory culture study, we exposed two A. fundyense strains that differ in their capacity to produce lytic compounds to the dinoflagellate grazer Polykrikos kofoidii, and analyzed transcriptomic changes during this interaction. Approximately 5% of all analyzed genes were differentially expressed between the two Alexandrium strains under control conditions (without grazer presence) with fold-change differences that were proportionally higher than those observed in grazer treatments. Species interactions led to the genotype-specific expression of genes involved in endocytotic processes, cell cycle control and outer membrane properties, and signal transduction and gene expression -
FIRST RECORD of Erythropsidinium Agile (GYMNODINIALES: WARNOWIACEAE) in the MEXICAN PACIFIC
CICIMAR Oceánides 25(2): 137-142 (2010) FIRST RECORD OF Erythropsidinium agile (GYMNODINIALES: WARNOWIACEAE) IN THE MEXICAN PACIFIC Primer registro de Erythropsidinium agile et Swezy, 1921, Proterythropsis Kofoid et Swezy, (Gymnodiniales: Warnowiaceae) en el 1921, Warnowia Lindemann, 1928, Greuetodinium Pacífico Mexicano Loeblich III, 1980, and Erythropsidinium P.C. Silva, 1960. Ten species of Erythropsidinium have been RESUMEN. Se registra por primera vez Erythropsi- described from warm and temperate seas. However, dinium agile, un dinoflagelado de la Familia Warno- a taxonomical study based on the changes in struc- wiaceae para el Pacífico Mexicano, dentro de Bahía ture, position, and coloration of the ocelloid in the de La Paz (Golfo de California). Se observaron 26 course of the cell division or individual development ejemplares de E. agile, principalmente en muestras revealed that some species had different morpho- de fitoplancton de red para el periodo de estudio (Ju- types (Elbrächter, 1979). At present the valid species nio, 2006 a Junio, 2010). En muestras de botella se currently considered to belong to this genus are: estimaron densidades entre 80 y 1000 cél. L–1. Los ejemplares de E. agile mostraron gran variación en E. agile (Hertwig, 1884) P.C. Silva, 1960, E. cochlea forma, tamaño y coloración; se presentaron princi- (Schütt, 1895) P.C. Silva, 1960, E. extrudens (Ko- palmente en el período invierno-primavera, cuando foid et Swezy, 1921) P.C. Silva, 1960, and E. minus la columna del agua está homogénea, a temperatu- (Kofoid et Swezy, 1921) P.C. Silva, 1960. For the ras entre 19 y 22 °C y rica en nutrientes. -
Grazing Impacts of the Heterotrophic Dinoflagellate Polykrikos Kofoidii on a Bloom of Gymnodinium Catenatum
AQUATIC MICROBIAL ECOLOGY Published April 30 Aquat Microb Ecol NOTE Grazing impacts of the heterotrophic dinoflagellate Polykrikos kofoidii on a bloom of Gymnodinium catenatum Yukihiko Matsuyama'f*,Masahide Miyamoto2, Yuichi ~otani' 'National Research Institute of Fisheries and Environment of Inland Sea, Maruishi, Ohno, Saeki, Hiroshima 739-0452, Japan 2KumamotoAriake Fisheries Direction Office, Iwasaki, Tamana, Kumamoto 865-0016, Japan ABSTRACT: In 1998, a red tide of the paralytic shellfish an assessment of the natural population of G. catena- poisoning (PSP)-producing dinoflagellate Gymnodinium cate- turn coupled with a laboratory incubation experiment naturn Graham occurred in Yatsushiro Sea, western Japan. to evaluate the bloom fate. We present data showing The dramatic decline of dominant G. catenatum cells oc- curred during the field and laboratory assessments, accompa- considerable predation by the pseudocolonial hetero- nied with growth of the heterotrophic dinoflagellate Poly- trophic dinoflagellate Polykrikos kofoidii Chatton on knkos kofoidii Chatton. Microscopic observations on both the dominant G. catenatum population, and discuss field and laboratory cultured bloom water revealed that the ecological importance of the genus Polykrikos and >50% of P. kofoidii predated on the natural population of G. catenaturn, and 1 to 8 G. catenatum cells were found in its grazing impact on harmful algal blooms. food vacuoles of P. kofoidii pseudocolonies. Our results sug- Materials and methods. Filed population surveys: gest that predation by P. kofoidii contributes to the cessation The Gymnodinium catenatum bloom occurred from 19 of a G. catenatum bloom. January to 5 February in Miyano-Gawachi Bay, west- ern Yatsushiro Sea, Kyushu Island (Fig. 1). Five cruises KEY WORDS: PSP - Gymnodimurn catenatum . -
A Parasite of Marine Rotifers: a New Lineage of Dinokaryotic Dinoflagellates (Dinophyceae)
Hindawi Publishing Corporation Journal of Marine Biology Volume 2015, Article ID 614609, 5 pages http://dx.doi.org/10.1155/2015/614609 Research Article A Parasite of Marine Rotifers: A New Lineage of Dinokaryotic Dinoflagellates (Dinophyceae) Fernando Gómez1 and Alf Skovgaard2 1 Laboratory of Plankton Systems, Oceanographic Institute, University of Sao˜ Paulo, Prac¸a do Oceanografico´ 191, Cidade Universitaria,´ 05508-900 Butanta,˜ SP, Brazil 2Department of Veterinary Disease Biology, University of Copenhagen, Stigbøjlen 7, 1870 Frederiksberg C, Denmark Correspondence should be addressed to Fernando Gomez;´ [email protected] Received 11 July 2015; Accepted 27 August 2015 Academic Editor: Gerardo R. Vasta Copyright © 2015 F. Gomez´ and A. Skovgaard. This is an open access article distributed under the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. Dinoflagellate infections have been reported for different protistan and animal hosts. We report, for the first time, the association between a dinoflagellate parasite and a rotifer host, tentatively Synchaeta sp. (Rotifera), collected from the port of Valencia, NW Mediterranean Sea. The rotifer contained a sporangium with 100–200 thecate dinospores that develop synchronically through palintomic sporogenesis. This undescribed dinoflagellate forms a new and divergent fast-evolved lineage that branches amongthe dinokaryotic dinoflagellates. 1. Introduction form independent lineages with no evident relation to other dinoflagellates [12]. In this study, we describe a new lineage of The alveolates (or Alveolata) are a major lineage of protists an undescribed parasitic dinoflagellate that largely diverged divided into three main phyla: ciliates, apicomplexans, and from other known dinoflagellates. -
Recent Dinoflagellate Cysts from the Chesapeake Estuary (Maryland and Virginia, U.S.A.): Taxonomy and Ecological Preferences
Recent dinoflagellate cysts from the Chesapeake estuary (Maryland and Virginia, U.S.A.): taxonomy and ecological preferences. Tycho Van Hauwaert Academic year 2015–2016 Master’s dissertation submitted in partial fulfillment of the requirements for the degree of Master in Science in Geology Promotor: Prof. Dr. S. Louwye Co-promotor: Dr. K. Mertens Tutor: P. Gurdebeke Jury: Dr. T. Verleye, Dr. E. Verleyen Picture on the cover An exceptionally dense bloom of Alexandrium monilatum was observed in lower Chesapeake Bay along the north shore of the York River between Sarah's Creek and the Perrin River on 17 August 2015. Credit: W. Vogelbein/VIMS ii ACKNOWLEDGEMENTS First of all I want to thank my promoters, Prof. Dr. S. Louwye and Dr. K. Mertens. They introduced me into the wonderful world of dinoflagellates and the dinocysts due to the course Advanced Micropaleontology. I did not have hesitated long to choose a subject within the research unit of paleontology. Thank you for the proofreading, help with identification and many discussions. A special mention for Pieter Gurdebeke. This appreciation you can imagine as a 22-minutes standing ovation for the small talks and jokes only! If you include the assistance in the thesis, I would not dare to calculate the time of applause. I remember when we were discussing the subject during the fieldtrip to the Alps in September. We have come a long way and I am pleased with the result. Thank you very much for helping me with the preparation of slides, identification of dinocysts, some computer programs, proofreading of the different chapters and many more! When I am back from my trip to Canada, I would like to discuss it with a (small) bottle of beer. -
Characterising Planktonic Dinoflagellate Diversity in Singapore Using DNA Metabarcoding
Metabarcoding and Metagenomics 2: 1–14 DOI 10.3897/mbmg.2.25136 Research Article Characterising planktonic dinoflagellate diversity in Singapore using DNA metabarcoding Yue Sze1, Lilibeth N. Miranda2, Tsai Min Sin2,†, Danwei Huang1,2 1 Department of Biological Sciences, National University of Singapore, Singapore 117558, Singapore. 2 Tropical Marine Science Institute, National University of Singapore, Singapore 119227, Singapore. † Deceased. Corresponding author: Danwei Huang ([email protected]) Academic editor: Thorsten Stoeck | Received 19 March 2018 | Accepted 24 April 2018 | Published 17 May 2018 Abstract Dinoflagellates are traditionally identified morphologically using microscopy, which is a time-consuming and labour-intensive process. Hence, we explored DNA metabarcoding using high-throughput sequencing as a more efficient way to study planktonic dinoflagellate diversity in Singapore’s waters. From 29 minimally pre-sorted water samples collected at four locations in western Singapore, DNA was extracted, amplified and sequenced for a 313-bp fragment of the V4–V5 region in the 18S ribosomal RNA gene. Two sequencing runs generated 2,847,170 assembled paired-end reads, corresponding to 573,176 unique sequences. Sequenc- es were clustered at 97% similarity and analysed with stringent thresholds (≥150 bp, ≥20 reads, ≥95% match to dinoflagellates), recovering 28 dinoflagellate taxa. Dinoflagellate diversity captured includes parasitic and symbiotic groups which are difficult to identify morphologically. Richness is similar between the inner and outer West Johor Strait, but variations in community structure are apparent, likely driven by environmental differences. None of the taxa detected in a recent phytoplankton bloom along the West Johor Strait have been recovered in our samples, suggesting that background communities are distinct from bloom communities. -
Cell Lysis of a Phagotrophic Dinoflagellate, Polykrikos Kofoidii Feeding on Alexandrium Tamarense
Plankton Biol. Ecol. 47 (2): 134-136,2000 plankton biology & ecology f The Plankton Society of Japan 2(100 Note Cell lysis of a phagotrophic dinoflagellate, Polykrikos kofoidii feeding on Alexandrium tamarense Hyun-Jin Cho1 & Kazumi Matsuoka2 'Graduate School of Marine Science and Engineering, Nagasaki University, 1-14 Bunkyo-inachi, Nagasaki 852-8521. Japan 2Laboratory of Coastal Environmental Sciences, Faculty of Fisheries. Nagasaki University. 1-14 Bunkyo-machi, Nagasaki 852-8521. Japan Received 9 December 1999; accepted 10 April 2000 In many cases, phytoplankton blooms terminate suddenly dinoflagellate, Alexandrium tamarense (Lebour) Balech. within a few days. For bloom-forming phytoplankton, grazing P. kofoidii was collected from Isahaya Bay in western is one of the major factors in the decline of blooms as is sexual Kyushu, Japan, on 3 November, 1998. We isolated actively reproduction to produce non-dividing gametes and planozy- swimming P. kofoidii using a capillary pipette and individually gotes (Anderson et al. 1983; Frost 1991). Matsuoka et al. transferred them into multi-well tissue culture plates contain (2000) reported growth rates of a phagotrophic dinoflagellate, ing a dense suspension of the autotrophic dinoflagellate, Polykrikos kofoidii Chatton, using several dinoflagellate Gymnodinium catenatum Graham (approximately 700 cells species as food organisms. They noted that P. kofoidii showed ml"1) isolated from a bloom near Amakusa Island, western various feeding and growth responses to strains of Alexan Japan, 1997. The P. kofoidii were cultured at 20°C with con drium and Prorocentrum. This fact suggests that for ecological stant lighting to a density of 60 indiv. ml"1, and then starved control of phytoplankton blooms, we should collect infor until no G. -
Marine Phytoplankton Atlas of Kuwait's Waters
Marine Phytoplankton Atlas of Kuwait’s Waters Marine Phytoplankton Atlas Marine Phytoplankton Atlas of Kuwait’s Waters Marine Phytoplankton Atlas of Kuwait’s of Kuwait’s Waters Manal Al-Kandari Dr. Faiza Y. Al-Yamani Kholood Al-Rifaie ISBN: 99906-41-24-2 Kuwait Institute for Scientific Research P.O.Box 24885, Safat - 13109, Kuwait Tel: (965) 24989000 – Fax: (965) 24989399 www.kisr.edu.kw Marine Phytoplankton Atlas of Kuwait’s Waters Published in Kuwait in 2009 by Kuwait Institute for Scientific Research, P.O.Box 24885, 13109 Safat, Kuwait Copyright © Kuwait Institute for Scientific Research, 2009 All rights reserved. ISBN 99906-41-24-2 Design by Melad M. Helani Printed and bound by Lucky Printing Press, Kuwait No part of this work may be reproduced or utilized in any form or by any means electronic or manual, including photocopying, or by any information or retrieval system, without the prior written permission of the Kuwait Institute for Scientific Research. 2 Kuwait Institute for Scientific Research - Marine phytoplankton Atlas Kuwait Institute for Scientific Research Marine Phytoplankton Atlas of Kuwait’s Waters Manal Al-Kandari Dr. Faiza Y. Al-Yamani Kholood Al-Rifaie Kuwait Institute for Scientific Research Kuwait Kuwait Institute for Scientific Research - Marine phytoplankton Atlas 3 TABLE OF CONTENTS CHAPTER 1: MARINE PHYTOPLANKTON METHODOLOGY AND GENERAL RESULTS INTRODUCTION 16 MATERIAL AND METHODS 18 Phytoplankton Collection and Preservation Methods 18 Sample Analysis 18 Light Microscope (LM) Observations 18 Diatoms Slide Preparation -
Sexual Reproduction and Bloom Dynamics of Toxic Dinoflagellates
SEXUAL REPRODUCTION AND BLOOM DYNAMICS OF TOXIC DINOFLAGELLATES FROM AUSTRALIAN ESTUARINE WATERS by Naomi S. Parker BSc., Grad. Dip. ASOS (Hons), MSc. Submitted in fulfillment of the requirements for the degree of Doctor of Philosophy School of Aquaculture University of Tasmania Hobart June,2002 DECLARATION AND AUTHORITY OF ACCESS This thesis contains no material which has been accepted for the award of a degree or a diploma in any university, and to the best of the author's knowledge and belief, the thesis contains no material previously published or written by another person, except where due acknowledgement is made in the text. This thesis may be made available for loan. Copying of any part of this thesis is prohibited for two years from the date this statement was signed; after that time limited copying is permitted in accordance with the Copyright Act 1968. Naomi S. Parker June 2002 ABSTRACT Of the dinoflagellates known to form toxic blooms in Australian estuaries three, Alexandrium minurum, Alexandrium catenella and Gymnodinium catenatum produce paralytic shellfish toxins that can lead to the potentially fatal paralytic shellfish poisoning in humans. These three species and a fourth dinoflagellate Protoceratium reticulatum all have the capacity to reproduce both by vegetative cell division and by sexual reproduction. The product of sexual reproduction in all cases is a resting cyst, which can sink to the sediments and remain dormant for a time. Resting cyst production results in a coupling between the benthic and pelagic components of estuarine systems and forms an important part of the ecological strategy of dinoflagellates. A variety of aspects of sexual reproduction of these four species were investigated. -
Ichthyotoxic Cochlodinium Polykrikoides Red Tides Offshore in the South Sea, Korea in 2014: II
Research Article Algae 2017, 32(3): 199-222 https://doi.org/10.4490/algae.2017.32.8.25 Open Access Ichthyotoxic Cochlodinium polykrikoides red tides offshore in the South Sea, Korea in 2014: II. Heterotrophic protists and their grazing impacts on red-tide organisms An Suk Lim1,2, Hae Jin Jeong1,3,*, Kyeong Ah Seong4, Moo Joon Lee1, Nam Seon Kang5, Se Hyeon Jang1, Kyung Ha Lee1, Jae Yeon Park3, Tae Young Jang1 and Yeong Du Yoo4 1School of Earth and Environmental Sciences, College of Natural Sciences, Seoul National University, Seoul 08826, Korea 2Brain Korea 21 Plus, School of Earth and Environmental Sciences, College of Natural Sciences, Seoul National University, Seoul 08826, Korea 3Advanced Institutes of Convergence Technology, Suwon 16229, Korea 4Department of Marine Biotechnology, Kunsan National University, Kunsan 54150, Korea 5Marine Biodiversity Institute of Korea, Seochun 33662, Korea Occurrence of Cochlodinium polykrikoides red tides have resulted in considerable economic losses in the aquaculture industry in many countries, and thus predicting the process of C. polykrikoides red tides is a critical step toward minimiz- ing those losses. Models predicting red tide dynamics define mortality due to predation as one of the most important parameters. To investigate the roles of heterotrophic protists in red tide dynamics in the South Sea of Korea, the abun- dances of heterotrophic dinoflagellates (HTDs), tintinnid ciliates (TCs), and naked ciliates (NCs) were measured over one- or two-week intervals from May to Nov 2014. In addition, the grazing impacts of dominant heterotrophic protists on each red tide species were estimated by combining field data on red tide species abundances and dominant heterotro- phic protist grazers with data obtained from the literature concerning ingestion rates of the grazers on red tide species. -
BMC Evolutionary Biology Biomed Central
BMC Evolutionary Biology BioMed Central Research article Open Access Molecular phylogeny of ocelloid-bearing dinoflagellates (Warnowiaceae) as inferred from SSU and LSU rDNA sequences Mona Hoppenrath*1,4, Tsvetan R Bachvaroff2, Sara M Handy3, Charles F Delwiche3 and Brian S Leander1 Address: 1Departments of Botany and Zoology, University of British Columbia, 6270 University Boulevard, Vancouver, BC, V6T 1Z4, Canada, 2Smithsonian Environmental Research Center, Edgewater, MD 21037-0028, USA, 3Department of Cell Biology and Molecular Genetics, University of Maryland, College Park, MD 20742-4407, USA and 4Current address : Forschungsinstitut Senckenberg, Deutsches Zentrum für Marine Biodiversitätsforschung (DZMB), Südstrand 44, D-26382 Wilhelmshaven, Germany Email: Mona Hoppenrath* - [email protected]; Tsvetan R Bachvaroff - [email protected]; Sara M Handy - [email protected]; Charles F Delwiche - [email protected]; Brian S Leander - [email protected] * Corresponding author Published: 25 May 2009 Received: 24 February 2009 Accepted: 25 May 2009 BMC Evolutionary Biology 2009, 9:116 doi:10.1186/1471-2148-9-116 This article is available from: http://www.biomedcentral.com/1471-2148/9/116 © 2009 Hoppenrath et al; licensee BioMed Central Ltd. This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/2.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. Abstract Background: Dinoflagellates represent a major lineage of unicellular eukaryotes with unparalleled diversity and complexity in morphological features. The monophyly of dinoflagellates has been convincingly demonstrated, but the interrelationships among dinoflagellate lineages still remain largely unresolved. Warnowiid dinoflagellates are among the most remarkable eukaryotes known because of their possession of highly elaborate ultrastructural systems: pistons, nematocysts, and ocelloids.