Isolation and Identification of Marine Microalgae from the Atlantic Ocean in the South of Morocco
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Molecular Evidence for the Wide Distribution of Two Lineages of Terrestrial Green Algae (Chlorophyta) Over Tropics to Temperate Zone
International Scholarly Research Network ISRN Ecology Volume 2012, Article ID 795924, 9 pages doi:10.5402/2012/795924 Research Article Molecular Evidence for the Wide Distribution of Two Lineages of Terrestrial Green Algae (Chlorophyta) over Tropics to Temperate Zone Ladislav Hodac,ˇ 1 Christine Hallmann,1 Helen Rosenkranz,2 Fabian Faßhauer,1 and Thomas Friedl1 1 Experimental Phycology and Culture Collection of Algae (SAG), Georg August University Gottingen,¨ Untere Karspule¨ 2a, 37073 Gottingen,¨ Germany 2 School of Biological Sciences, University of Bristol, Woodland Road, Bristol BS8 1UG, UK Correspondence should be addressed to Ladislav Hodac,ˇ [email protected] Received 29 April 2012; Accepted 29 July 2012 Academic Editors: J. McLaughlin, M. Rossetto, S. Sabater, and W. Shi Copyright © 2012 Ladislav Hodacˇ et al. This is an open access article distributed under the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. Phylogenetic analyses of 18S rDNA sequences from environmental clones and culture strains revealed a widespread distribution of two subaerial green algal lineages, Jenufa and Xylochloris, recently described from rainforests in southeast Asia. A new lineage of Jenufa (Chlorophyceae), most closely related to or even conspecific with J. minuta, was formed by sequences of European origin. Two more lineages of Jenufa were formed by three additional sequences from Ecuador and Panama. The other lineage was a close relative of Xylochloris irregularis (Trebouxiophyceae), probably representing a new species of the genus and distinct from the only so far described species, X. irregularis. It comprised two distinct clades each containing almost identical sequences from Germany and Ecuador. -
Lake Spokane Dissolved Oxygen Water Quality Attainment Plan Five Year Report
AVISTA CORPORATION LAKE SPOKANE DISSOLVED OXYGEN WATER QUALITY ATTAINMENT PLAN FIVE YEAR REPORT WASHINGTON 401 CERTIFICATION FERC LICENSE APPENDIX B, SECTION 5.6 SPOKANE RIVER HYDROELECTRIC PROJECT FERC PROJECT NO. 2545 Prepared By: March 24, 2017 [Page intentionally left blank] TABLE OF CONTENTS 1.0 INTRODUCTION ........................................................................................................ 1 2.0 BASELINE MONITORING ........................................................................................ 3 2.1 2016 Monitoring Results .............................................................................................. 3 2.2 Assessment of Lake Spokane Water Quality (2010 – 2016) ........................................ 7 2.3 Monitoring Recommendations ..................................................................................... 8 3.0 IMPLEMENTATION ACTIVITIES ........................................................................... 9 3.1 Studies .......................................................................................................................... 9 3.1.1 Carp Population Reduction Program ...................................................................... 10 3.1.2 Aquatic Weed Management .................................................................................... 10 3.2 2016 Implementation Measures .................................................................................. 11 3.2.1 Carp ........................................................................................................................ -
Compartmentalization of Mrnas in the Giant, Unicellular Green Algae
bioRxiv preprint doi: https://doi.org/10.1101/2020.09.18.303206; this version posted September 18, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. 1 Compartmentalization of mRNAs in the giant, 2 unicellular green algae Acetabularia acetabulum 3 4 Authors 5 Ina J. Andresen1, Russell J. S. Orr2, Kamran Shalchian-Tabrizi3, Jon Bråte1* 6 7 Address 8 1: Section for Genetics and Evolutionary Biology, Department of Biosciences, University of 9 Oslo, Kristine Bonnevies Hus, Blindernveien 31, 0316 Oslo, Norway. 10 2: Natural History Museum, University of Oslo, Oslo, Norway 11 3: Centre for Epigenetics, Development and Evolution, Department of Biosciences, University 12 of Oslo, Kristine Bonnevies Hus, Blindernveien 31, 0316 Oslo, Norway. 13 14 *Corresponding author 15 Jon Bråte, [email protected] 16 17 Keywords 18 Acetabularia acetabulum, Dasycladales, UMI, STL, compartmentalization, single-cell, mRNA. 19 20 Abstract 21 Acetabularia acetabulum is a single-celled green alga previously used as a model species for 22 studying the role of the nucleus in cell development and morphogenesis. The highly elongated 23 cell, which stretches several centimeters, harbors a single nucleus located in the basal end. 24 Although A. acetabulum historically has been an important model in cell biology, almost 25 nothing is known about its gene content, or how gene products are distributed in the cell. To 26 study the composition and distribution of mRNAs in A. -
Tesis Salvador Chiva 160120 Portada
TESIS DOCTORAL PATRONES DE SELECCIÓN DE MICROALGAS EN COMUNIDADES DE LÍQUENES TERRÍCOLAS EN BIOCOSTRAS Salvador Chiva Natividad Departamento de Botánica y Geología TESIS DOCTORAL PATRONES DE SELECCIÓN DE MICROALGAS EN COMUNIDADES DE LÍQUENES TERRÍCOLAS EN BIOCOSTRAS JOSÉ SALVADOR CHIVA NATIVIDAD Directora/Tutora: Eva Barreno Rodríguez Directora: Patricia Moya Gay Directora: Arantzazu Molins Piqueres Programa de Doctorado en Biodiversidad y Biología Evolutiva Valencia, enero 2020 Departamento de Botánica y Geología Tesis presentada por José Salvador Chiva Natividad para optar al grado de Doctor en Ciencias Biológicas por la Universitat de València, con el título: Patrones de selección de microalgas en comunidades de líquenes terrícolas en biocostras Firmado: José Salvador Chiva Natividad La Dra. Eva Barreno Rodríguez, Catedrática del Departamento de Botánica y Geología de la Facultad de Ciencias Biológicas de la Universitat de València; la Dra. Patricia Moya Gay y la Dra. Arantzazu Molins Piqueres. Certifican que el licenciado en Biología José Salvador Chiva Natividad ha realizado bajo su dirección el trabajo Patrones de selección de microalgas en comunidades de líquenes terrícolas en biocostras, y autorizan su presentación para optar al título de Doctor de la Universitat de València. Y para que así conste, en cumplimiento de la legislación vigente, fi rmamos el presente certifi cado en Burjassot, en octubre de 2019. Fdo.: Eva Barreno Rodríguez Fdo.: Patricia Moya Gay Fdo.: Arantzazu Molins Piqueres Directora/ Tutora de la Tesis Directora de la Tesis Directora de la Tesis Departamento de Botánica y Geología La Dra. Eva Barreno Rodríguez, Catedrática del Departamento de Botánica y Geología de la Facultad de Ciencias Biológicas de la Universitat de València; la Dra. -
First Record of Botryococcus Braunii Kützing from Namibia
Bothalia - African Biodiversity & Conservation ISSN: (Online) 2311-9284, (Print) 0006-8241 Page 1 of 5 New Distribution Record First record of Botryococcus braunii Kützing from Namibia Authors: Background: Botryococcus braunii is well known from all continents, but it has been sparsely 1 Sanet Janse van Vuuren recorded from Africa compared to other continents. The alga recently formed a rusty orange- Anatoliy Levanets1 red bloom in the Tilda Viljoen Dam, situated near Gobabis in Namibia. Blooms of this species Affiliations: are known to produce allelopathic substances that inhibit the growth and diversity of other 1Unit for Environmental phytoplankton, zooplankton and fish. Sciences and Management, North-West University, Objectives: The objective of this study was to record the presence of B. braunii in Namibia. South Africa Method: Morphological features of the species were compared with illustrations and Corresponding author: literature on B. braunii found in other continents of the world, particularly North America Sanet Janse van Vuuren, and Europe. Extensive literature surveys revealed its currently known geographical sanet.jansevanvuuren@nwu. ac.za distribution. Dates: Results: The organism responsible for the discolouration of the water was identified as Received: 13 June 2018 B. braunii. Microscopic examination revealed large colonies that floated in a thick layer on the Accepted: 29 Aug. 2018 surface of the water. Literature searches on the geographical distribution of B. braunii revealed Published: 09 Jan. 2019 that this was the first record of this species’ presence in Namibia. How to cite this article: Conclusion: The known geographical distribution of B. braunii was expanded to include Janse van Vuuren, S. & Namibia. -
Vulcanochloris (Trebouxiales, Trebouxiophyceae), a New Genus of Lichen Photobiont from La Palma, Canary Islands, Spain
Phytotaxa 219 (2): 118–132 ISSN 1179-3155 (print edition) www.mapress.com/phytotaxa/ PHYTOTAXA Copyright © 2015 Magnolia Press Article ISSN 1179-3163 (online edition) http://dx.doi.org/10.11646/phytotaxa.219.2.2 Vulcanochloris (Trebouxiales, Trebouxiophyceae), a new genus of lichen photobiont from La Palma, Canary Islands, Spain LUCIE VANČUROVÁ1*, ONDŘEJ PEKSA2, YVONNE NĚMCOVÁ1 & PAVEL ŠKALOUD1 1Charles University in Prague, Faculty of Science, Department of Botany, Benátská 2, 128 01 Prague 2, Czech Republic 2The West Bohemian Museum in Pilsen, Kopeckého sady 2, 301 00 Plzeň, Czech Republic * Corresponding author (E-mail: [email protected]) Abstract This paper describes a new genus of lichen photobionts, Vulcanochloris, with three newly proposed species, V. canariensis, V. guanchorum and V. symbiotica. These algae have been discovered as photobionts of lichen Stereocaulon vesuvianum growing on slopes of volcanos and lava fields on La Palma, Canary Islands, Spain. Particular species, as well as the newly proposed genus, are delimited based on ITS rDNA, 18S rDNA and rbcL sequences, chloroplast morphology, and ultrastruc- tural features. Phylogenetic analyses infer the genus Vulcanochloris as a member of Trebouxiophycean order Trebouxiales, in a sister relationship with the genus Asterochloris. Our data point to the similar lifestyle and morphology of these two genera; however, Vulcanochloris can be well distinguished by a unique formation of spherical incisions within the pyrenoid. Mycobiont specificity and geographical distribution of the newly proposed genus is further discussed. Introduction The class Trebouxiophyceae, originally circumscribed by ultrastructural features as Pleurastrophyceae, is currently defined phylogenetically, predominantly by a similarity in 18S rDNA sequence data. -
Molecular Characterization of Eukaryotic Algal Communities in The
Zhu et al. BMC Plant Biology (2018) 18:365 https://doi.org/10.1186/s12870-018-1588-7 RESEARCH ARTICLE Open Access Molecular characterization of eukaryotic algal communities in the tropical phyllosphere based on real-time sequencing of the 18S rDNA gene Huan Zhu1, Shuyin Li1, Zhengyu Hu2 and Guoxiang Liu1* Abstract Backgroud: Foliicolous algae are a common occurrence in tropical forests. They are referable to a few simple morphotypes (unicellular, sarcinoid-like or filamentous), which makes their morphology of limited usefulness for taxonomic studies and species diversity assessments. The relationship between algal community and their host phyllosphere was not clear. In order to obtain a more accurate assessment, we used single molecule real-time sequencing of the 18S rDNA gene to characterize the eukaryotic algal community in an area of South-western China. Result: We annotated 2922 OTUs belonging to five classes, Ulvophyceae, Trebouxiophyceae, Chlorophyceae, Dinophyceae and Eustigmatophyceae. Novel clades formed by large numbers sequences of green algae were detected in the order Trentepohliales (Ulvophyceae) and the Watanabea clade (Trebouxiophyceae), suggesting that these foliicolous communities may be substantially more diverse than so far appreciated and require further research. Species in Trentepohliales, Watanabea clade and Apatococcus clade were detected as the core members in the phyllosphere community studied. Communities from different host trees and sampling sites were not significantly different in terms of OTUs composition. However, the communities of Musa and Ravenala differed from other host plants significantly at the genus level, since they were dominated by Trebouxiophycean epiphytes. Conclusion: The cryptic diversity of eukaryotic algae especially Chlorophytes in tropical phyllosphere is very high. -
Molecular Evidence for the Wide Distribution of Two Lineages of Terrestrial Green Algae (Chlorophyta) Over Tropics to Temperate Zone
International Scholarly Research Network ISRN Ecology Volume 2012, Article ID 795924, 9 pages doi:10.5402/2012/795924 Research Article Molecular Evidence for the Wide Distribution of Two Lineages of Terrestrial Green Algae (Chlorophyta) over Tropics to Temperate Zone Ladislav Hodac,ˇ 1 Christine Hallmann,1 Helen Rosenkranz,2 Fabian Faßhauer,1 and Thomas Friedl1 1 Experimental Phycology and Culture Collection of Algae (SAG), Georg August University Gottingen,¨ Untere Karspule¨ 2a, 37073 Gottingen,¨ Germany 2 School of Biological Sciences, University of Bristol, Woodland Road, Bristol BS8 1UG, UK Correspondence should be addressed to Ladislav Hodac,ˇ [email protected] Received 29 April 2012; Accepted 29 July 2012 Academic Editors: J. McLaughlin, M. Rossetto, S. Sabater, and W. Shi Copyright © 2012 Ladislav Hodacˇ et al. This is an open access article distributed under the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. Phylogenetic analyses of 18S rDNA sequences from environmental clones and culture strains revealed a widespread distribution of two subaerial green algal lineages, Jenufa and Xylochloris, recently described from rainforests in southeast Asia. A new lineage of Jenufa (Chlorophyceae), most closely related to or even conspecific with J. minuta, was formed by sequences of European origin. Two more lineages of Jenufa were formed by three additional sequences from Ecuador and Panama. The other lineage was a close relative of Xylochloris irregularis (Trebouxiophyceae), probably representing a new species of the genus and distinct from the only so far described species, X. irregularis. It comprised two distinct clades each containing almost identical sequences from Germany and Ecuador. -
The Lichen Symbiosis Re-Viewed Through the Genomes of Cladonia
Armaleo et al. BMC Genomics (2019) 20:605 https://doi.org/10.1186/s12864-019-5629-x RESEARCH ARTICLE Open Access The lichen symbiosis re-viewed through the genomes of Cladonia grayi and its algal partner Asterochloris glomerata Daniele Armaleo1* , Olaf Müller1,2, François Lutzoni1, Ólafur S. Andrésson3, Guillaume Blanc4, Helge B. Bode5, Frank R. Collart6, Francesco Dal Grande7, Fred Dietrich2, Igor V. Grigoriev8,9, Suzanne Joneson1,10, Alan Kuo8, Peter E. Larsen6, John M. Logsdon Jr11, David Lopez12, Francis Martin13, Susan P. May1,14, Tami R. McDonald1,15, Sabeeha S. Merchant9,16, Vivian Miao17, Emmanuelle Morin13, Ryoko Oono18, Matteo Pellegrini19, Nimrod Rubinstein20,21, Maria Virginia Sanchez-Puerta22, Elizabeth Savelkoul11, Imke Schmitt7,23, Jason C. Slot24, Darren Soanes25, Péter Szövényi26, Nicholas J. Talbot27, Claire Veneault-Fourrey13,28 and Basil B. Xavier3,29 Abstract Background: Lichens, encompassing 20,000 known species, are symbioses between specialized fungi (mycobionts), mostly ascomycetes, and unicellular green algae or cyanobacteria (photobionts). Here we describe the first parallel genomic analysis of the mycobiont Cladonia grayi and of its green algal photobiont Asterochloris glomerata.We focus on genes/predicted proteins of potential symbiotic significance, sought by surveying proteins differentially activated during early stages of mycobiont and photobiont interaction in coculture, expanded or contracted protein families, and proteins with differential rates of evolution. Results: A) In coculture, the fungus upregulated small secreted proteins, membrane transport proteins, signal transduction components, extracellular hydrolases and, notably, a ribitol transporter and an ammonium transporter, and the alga activated DNA metabolism, signal transduction, and expression of flagellar components. B) Expanded fungal protein families include heterokaryon incompatibility proteins, polyketide synthases, and a unique set of G- protein α subunit paralogs. -
Complete Mitochondrial and Plastid DNA Sequences of the Freshwater Green Microalga Medakamo Hakoo
bioRxiv preprint doi: https://doi.org/10.1101/2021.07.27.453968; this version posted July 27, 2021. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. Complete Mitochondrial and Plastid DNA Sequences of the Freshwater Green Microalga Medakamo hakoo Mari Takusagawa1,2, Shoichi Kato3, Sachihiro Matsunaga3,4, Shinichiro Maruyama5,6, Yayoi Tsujimoto-Inui3, Hisayoshi Nozaki7, Fumi Yagisawa8,9, Mio Ohnuma10, Haruko Kuroiwa11, Tsuneyoshi Kuroiwa11 & Osami Misumi2# 1Department of Botany, Graduate School of Science, Kyoto University, Kyoto, Japan 2Department of Biology, Faculty of Science, Graduate School of Sciences and Technology for Innovation, Yamaguchi University, Yamaguchi, Japan 3Department of Applied Biological Science, Faculty of Science and Technology, Tokyo University of Science, Noda, Japan 4Department of Integrated Biosciences, Graduate School of Frontier Sciences, The University of Tokyo, Kashiwa, Japan 5Department of Ecological Developmental Adaptability Life Sciences, Graduate School of Life Sciences, Tohoku University, Sendai, Japan. 6Graduate School of Humanities and Sciences, Ochanomizu University, Bunkyo-ku, Tokyo 112-8610, Japan. 7Department of Biological Sciences, Graduate School of Science, The University of Tokyo, Tokyo, Japan 8Center for Research Advancement and Collaboration, University of the Ryukyus, Okinawa, Japan 9Graduate School of Engineering and Science, University of the Ryukyus, Okinawa, Japan 10National Institute of Technology (KOSEN), Hiroshima College, Hiroshima, Japan 11Department of Chemical and Biological Science, Faculty of Science, Japan Women’s University, Tokyo, Japan Running Head: The complete organellar genomes of the green alga Medakamo hakoo # Address correspondence to Osami Misumi, [email protected] bioRxiv preprint doi: https://doi.org/10.1101/2021.07.27.453968; this version posted July 27, 2021. -
Green Algae and the Origin of Land Plants1
American Journal of Botany 91(10): 1535±1556. 2004. GREEN ALGAE AND THE ORIGIN OF LAND PLANTS1 LOUISE A. LEWIS2,4 AND RICHARD M. MCCOURT3,4 2Department of Ecology and Evolutionary Biology, University of Connecticut, Storrs, Connecticut 06269 USA; and 3Department of Botany, Academy of Natural Sciences, 1900 Benjamin Franklin Parkway, Philadelphia, Pennsylvania 19103 USA Over the past two decades, molecular phylogenetic data have allowed evaluations of hypotheses on the evolution of green algae based on vegetative morphological and ultrastructural characters. Higher taxa are now generally recognized on the basis of ultrastruc- tural characters. Molecular analyses have mostly employed primarily nuclear small subunit rDNA (18S) and plastid rbcL data, as well as data on intron gain, complete genome sequencing, and mitochondrial sequences. Molecular-based revisions of classi®cation at nearly all levels have occurred, from dismemberment of long-established genera and families into multiple classes, to the circumscription of two major lineages within the green algae. One lineage, the chlorophyte algae or Chlorophyta sensu stricto, comprises most of what are commonly called green algae and includes most members of the grade of putatively ancestral scaly ¯agellates in Prasinophyceae plus members of Ulvophyceae, Trebouxiophyceae, and Chlorophyceae. The other lineage (charophyte algae and embryophyte land plants), comprises at least ®ve monophyletic groups of green algae, plus embryophytes. A recent multigene analysis corroborates a close relationship between Mesostigma (formerly in the Prasinophyceae) and the charophyte algae, although sequence data of the Mesostigma mitochondrial genome analysis places the genus as sister to charophyte and chlorophyte algae. These studies also support Charales as sister to land plants. -
Characterization of Black Patina from the Tiber River Embankments Using Next- Generation Sequencing
RESEARCH ARTICLE Characterization of black patina from the Tiber River embankments using Next- Generation Sequencing Federica Antonelli1*, Alfonso Esposito2, Ludovica Calvo3, Valerio Licursi4, Philippe Tisseyre5, Sandra Ricci6, Manuela Romagnoli1, Silvano Piazza2, 3,7 Francesca GuerrieriID * 1 Department of Innovation of Biological Systems, Food and Forestry (DIBAF), Tuscia University, Viterbo, Italy, 2 Department of Cellular, Computational and Integrative Biology±CIBIO, University of Trento, Trento, Italy, 3 Center for Life NanoScience@Sapienza, Istituto Italiano di Tecnologia, Rome, Italy, 4 Institute for a1111111111 Systems Analysis and Computer Science ªAntonio Rubertiº, National Research Council, Rome, Italy, a1111111111 5 Soprintendenza del Mare, Regione Sicilia, Palermo, Italy, 6 Biology Laboratory, Istituto Superiore per la a1111111111 Conservazione e per il Restauro (ISCR), Rome, Italy, 7 Epigenetics and epigenomic of hepatocellular a1111111111 carcinoma, U1052, Cancer Research Center of Lyon (CRCL), Lyon, France a1111111111 * [email protected] (FG); [email protected] (FA) Abstract OPEN ACCESS Black patinas are very common biological deterioration phenomena on lapideous artworks Citation: Antonelli F, Esposito A, Calvo L, Licursi V, Tisseyre P, Ricci S, et al. (2020) Characterization of in outdoor environments. These substrates, exposed to sunlight, and atmospheric and envi- black patina from the Tiber River embankments ronmental agents (i.e. wind and temperature changes), represent extreme environments using Next-Generation Sequencing. PLoS ONE 15 that can only be colonized by highly versatile and adaptable microorganisms. Black patinas (1): e0227639. https://doi.org/10.1371/journal. pone.0227639 comprise a wide variety of microorganisms, but the morphological plasticity of most of these microorganisms hinders their identification by optical microscopy. This study used Next- Editor: Ana R.