African Clawed Frog (Xenopus Laevis) Ecological Risk Screening Summary
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Threat Abatement Plan
gus resulting in ch fun ytridio trid myc chy osis ith w s n ia ib h p m a f o n o i t THREAT ABATEMENTc PLAN e f n I THREAT ABATEMENT PLAN INFECTION OF AMPHIBIANS WITH CHYTRID FUNGUS RESULTING IN CHYTRIDIOMYCOSIS Department of the Environment and Heritage © Commonwealth of Australia 2006 ISBN 0 642 55029 8 Published 2006 This work is copyright. Apart from any use as permitted under the Copyright Act 1968, no part may be reproduced by any process without prior written permission from the Commonwealth, available from the Department of the Environment and Heritage. Requests and inquiries concerning reproduction and rights should be addressed to: Assistant Secretary Natural Resource Management Policy Branch Department of the Environment and Heritage PO Box 787 CANBERRA ACT 2601 This publication is available on the Internet at: www.deh.gov.au/biodiversity/threatened/publications/tap/chytrid/ For additional hard copies, please contact the Department of the Environment and Heritage, Community Information Unit on 1800 803 772. Front cover photo: Litoria genimaculata (Green-eyed tree frog) Sequential page photo: Taudactylus eungellensis (Eungella day frog) Banner photo on chapter pages: Close up of the skin of Litoria genimaculata (Green-eyed tree frog) ii Foreword ‘Infection of amphibians with chytrid fungus resulting Under the EPBC Act the Australian Government in chytridiomycosis’ was listed in July 2002 as a key implements the plan in Commonwealth areas and seeks threatening process under the Environment Protection the cooperation of the states and territories where the and Biodiversity Conservation Act 1999 (EPBC Act). disease impacts within their jurisdictions. -
Disease and Clinical Signs Poster
African Clawed Frog Xenopus laevis Diseases and Clinical Signs in Photographs Therese Jones-Green University Biomedical Services Abstract Reported clinical signs associated with ill health and Clinical signs found between 2016 to 2018 Many diseases of Xenopus laevis frogs have been described in the • Opened in 2005, the biofacility can hold up to 900 female and 240 disease Clinical signs found between 2016 to 2018 male frogs in a Marine Biotech (now serviced by MBK Installations Ltd.) • 80 recirculating aquatic system. • Buoyancy problems 70 bridge this gap using photographs taken of frogs with clinical signs. The system monitors parameters such as: temperature, pH, • • Changes in activity e.g. lethargy or easily startled. My aims are: conductivity, and Total Gas Pressure. 60 • Unusual amount of skin shedding. 2018 • To share my experiences, via images, to help improve the welfare and • Frogs are maintained on mains fed water with a 20% water exchange. 50 ases • Weight loss, or failure to feed correctly. c husbandry of this species. • 2017 • Coelomic (body cavity) distention. 40 • To stimulate a dialogue which results in further sharing of ideas and 2016 Whole body bloat. 30 information. • Frogs are held under a 12 hour light/dark cycle. • Number of • Each tank has a PVC enrichment tube (30cm x 10cm), with smoothed • Fungal strands/tufts. 20 Introduction cut edges. • Sores or tremors at extremities (forearms and toes). 10 Between January 2016 and October 2018, cases of ill health and disease • Frogs are fed three times a week with a commercial trout pellet. • Redness or red spots. 0 Oedema Red leg Red leg (bad Red leg Gas bubble Sores on forearm Opaque cornea Skeletal Growth (cartilage Scar Cabletie Missing claws Eggbound in a colony of Xenopus laevis frogs housed by the University Biological hormone) (nematodes) disease deformity under skin) • The focus of the research undertaken in the biofacility is embryonic and • Excessive slime/mucous production or not enough (dry dull skin). -
Table S1. Nakharuthai and Srisapoome (2020)
Primer name Nucleotide sequence (5’→3’) Purpose CXC-1F New TGAACCCTGAGCTGAAGGCCGTGA Real-time PCR CXC-1R New TGAAGGTCTGATGAGTTTGTCGTC Real-time PCR CXC-1R CCTTCAGCTCAGGGTTCAAGC Genomic PCR CXC-2F New GCTTGAACCCCGAGCTGAAAAACG Real-time PCR CXC-2R New GTTCAGAGGTCGTATGAGGTGCTT Real-time PCR CXC-2F CAAGCAGGACAACAGTGTCTGTGT 3’RACE CXC-2AR GTTGCATGATTTGGATGCTGGGTAG 5’RACE CXC-1FSB AACATATGTCTCCCAGGCCCAACTCAAAC Southern blot CXC-1RSB CTCGAGTTATTTTGCACTGATGTGCAA Southern blot CXC1Exon1F CAAAGTGTTTCTGCTCCTGG Genomic PCR On-CXC1FOverEx CATATGCAACTCAAACAAGCAGGACAACAGT Overexpression On-CXC1ROverEx CTCGAGTTTTGCACTGATGTGCAATTTCAA Overexpression On-CXC2FOverEx CATATGCAACTCAAACAAGCAGGACAACAGT Overexpression On-CXC2ROverEx CTCGAGCATGGCAGCTGTGGAGGGTTCCAC Overexpression β-actinrealtimeF ACAGGATGCAGAAGGAGATCACAG Real-time PCR β-actinrealtimeR GTACTCCTGCTTGCTGATCCACAT Real-time PCR M13F AAAACGACGGCCAG Nucleotide sequencing M13R AACAGCTATGACCATG Nucleotide sequencing UPM-long (0.4 µM) CTAATACGACTCACTATAGGGCAAGCAGTGGTATCAACGCAGAGT RACE PCR UPM-short (2 µM) CTAATAC GACTCACTATA GGGC RACE PCR Table S1. Nakharuthai and Srisapoome (2020) On-CXC1 Nucleotide (%) Amino acid (%) On-CXC2 Nucleotide (%) Amino acid (%) Versus identity identity similarity Versus identity identity Similarity Teleost fish 1. Rock bream, Oplegnathus fasciatus (AB703273) 64.5 49.1 68.1 O. fasciatus 70.7 57.7 75.4 2. Mandarin fish, Siniperca chuatsi (AAY79282) 63.2 48.1 68.9 S. chuatsi 70.5 54.0 78.8 3. Atlantic halibut, Hippoglossus hippoglossus (ACY54778) 52.0 39.3 51.1 H. hippoglossus 64.5 46.3 63.9 4. Common carp IL-8, Cyprinus carpio (ABE47600) 44.9 19.1 34.1 C. carpio 49.4 21.9 42.6 5. Rainbow trout IL-8, Oncorhynchus mykiss (CAC33585) 44.0 21.3 36.3 O. mykiss 47.3 23.7 44.4 6. Japanese flounder IL-8, Paralichthys olivaceus (AAL05442) 48.4 25.4 45.9 P. -
Xenopus for Dummies.Docx
Xenopus for DUMMIES 1 Xenopus for DUMMIES OUTLINE Introduction ........................................................................................................................... 2 1. Why is Xenopus interesting for iGEM? ........................................................................... 4 2. Requirements before planning to work on Xenopus......................................................... 5 3. Guidelines to define an iGEM project with Xenopus ........................................................ 5 4. The micro-injection procedure ........................................................................................ 7 a. Step 1: Fertilized eggs ........................................................................................ 7 b. Step 2: DNA injection .......................................................................................... 7 c. Place the injected embryos in incubator 21°C ..................................................... 8 d. The following days .............................................................................................. 8 e. Embryos injection: efficiency ............................................................................... 8 5. The biobrick plasmids for Xenopus ................................................................................. 9 6. Xenopus debugging tool ............................................................................................... 10 a. How? ................................................................................................................ -
Association of DNA with Nuclear Matrix in in Vitro Assembled Nuclei
Cell Research (1997), 7, 107-117 Association of DNA with nuclear matrix in in vitro as- sembled nuclei induced by rDNA from Tetrahymena shang- haiensis in Xenopus egg extracts CHEN YING, BO ZHANG, XIU FEN LI, ZHONG HE ZHAI Department of Cell Biology and Genetics, College of Life Sciences, Peking University, Beijing 100871 ABSTRACT The nuclei assembled from exogenous DNA or chro- matin in egg extracts resemble their in vivo counterparts in many aspects. However, the distribution pattern of DNA in these nuclei remains unknown. We introduced rDNA from the macronuclei of Tetrahymena into Xenopus cell- free extracts to examine the association of specific DNA sequences with nuclear matrix (NM) in the nuclei assem- bled in vitro. Our previous works showed the 5'NTS (non- transcription sequences) of the rDNA specifically bind to the NM system in the macronuclei. We show now the rDNA could induce chromatin assembly and nuclear for- mation in Xenopus cell-free system. When we extracted the NM system and compared the binding affinity of differ- ent regions of rDNA with the NM system, we found that the 5'NTS still hold their binding affinity with insoluble structure of the assembled nuclei in the extracts of Xeno- pus eggs. Key words: Nuclear assembly, nuclear matrix, Xeno- pus egg extracts, Tetrahymena rDNA. On the occasion of Professor Lu Ji SHI's (L. C. Sze), eightieth birthday, we present this paper and extend our sincere greetings to Professor SHI. As we mentioned in our paper, in early 1950's, it is Professor SHI who first studied the behavior of exogenous homologous desoxyribose nucleoprotein (chromatin) in amphibian eggs. -
Maritime Southeast Asia and Oceania Regional Focus
November 2011 Vol. 99 www.amphibians.orgFrogLogNews from the herpetological community Regional Focus Maritime Southeast Asia and Oceania INSIDE News from the ASG Regional Updates Global Focus Recent Publications General Announcements And More..... Spotted Treefrog Nyctixalus pictus. Photo: Leong Tzi Ming New The 2012 Sabin Members’ Award for Amphibian Conservation is now Bulletin open for nomination Board FrogLog Vol. 99 | November 2011 | 1 Follow the ASG on facebook www.facebook.com/amphibiansdotor2 | FrogLog Vol. 99| November 2011 g $PSKLELDQ$UN FDOHQGDUVDUHQRZDYDLODEOH 7KHWZHOYHVSHFWDFXODUZLQQLQJSKRWRVIURP $PSKLELDQ$UN¶VLQWHUQDWLRQDODPSKLELDQ SKRWRJUDSK\FRPSHWLWLRQKDYHEHHQLQFOXGHGLQ $PSKLELDQ$UN¶VEHDXWLIXOZDOOFDOHQGDU7KH FDOHQGDUVDUHQRZDYDLODEOHIRUVDOHDQGSURFHHGV DPSKLELDQDUN IURPVDOHVZLOOJRWRZDUGVVDYLQJWKUHDWHQHG :DOOFDOHQGDU DPSKLELDQVSHFLHV 3ULFLQJIRUFDOHQGDUVYDULHVGHSHQGLQJRQ WKHQXPEHURIFDOHQGDUVRUGHUHG±WKHPRUH \RXRUGHUWKHPRUH\RXVDYH2UGHUVRI FDOHQGDUVDUHSULFHGDW86HDFKRUGHUV RIEHWZHHQFDOHQGDUVGURSWKHSULFHWR 86HDFKDQGRUGHUVRIDUHSULFHGDW MXVW86HDFK 7KHVHSULFHVGRQRWLQFOXGH VKLSSLQJ $VZHOODVRUGHULQJFDOHQGDUVIRU\RXUVHOIIULHQGV DQGIDPLO\ZK\QRWSXUFKDVHVRPHFDOHQGDUV IRUUHVDOHWKURXJK\RXU UHWDLORXWOHWVRUIRUJLIWV IRUVWDIIVSRQVRUVRUIRU IXQGUDLVLQJHYHQWV" 2UGHU\RXUFDOHQGDUVIURPRXUZHEVLWH ZZZDPSKLELDQDUNRUJFDOHQGDURUGHUIRUP 5HPHPEHU±DVZHOODVKDYLQJDVSHFWDFXODUFDOHQGDU WRNHHSWUDFNRIDOO\RXULPSRUWDQWGDWHV\RX¶OODOVREH GLUHFWO\KHOSLQJWRVDYHDPSKLELDQVDVDOOSUR¿WVZLOOEH XVHGWRVXSSRUWDPSKLELDQFRQVHUYDWLRQSURMHFWV ZZZDPSKLELDQDUNRUJ FrogLog Vol. 99 | November -
The Frog in Taffeta Pants
Evolutionary Anthropology 13:5–10 (2004) CROTCHETS & QUIDDITIES The Frog in Taffeta Pants KENNETH WEISS What is the magic that makes dead flesh fly? himself gave up on the preformation view). These various intuitions arise natu- Where does a new life come from? manded explanation. There was no rally, if sometimes fancifully. The nat- Before there were microscopes, and compelling reason to think that what uralist Henry Bates observed that the before the cell theory, this was not a one needed to find was too small to natives in the village of Aveyros, up trivial question. Centuries of answers see. Aristotle hypothesized epigenesis, the Tapajos tributary to the Amazon, were pure guesswork by today’s stan- a kind of spontaneous generation of believed the fire ants, that plagued dards, but they had deep implications life from the required materials (pro- them horribly, sprang up from the for the understanding of life. The vided in the egg), that systematic ob- blood of slaughtered victims of the re- 5 phrase spontaneous generation has servation suggested coalesced into a bellion of 1835–1836 in Brazil. In gone out of our vocabulary except as chick. Such notions persisted for cen- fact, Greek mythology is full of beings an historical relic, reflecting a total turies into what we will see was the spontaneously arising—snakes from success of two centuries of biological critical 17th century, when the follow- Medusa’s blood, Aphrodite from sea- research.1 The realization that a new ing alchemist’s recipe was offered for foam, and others. Even when the organism is always generated from the production of mice:3,4 mix sweaty truth is known, we can be similarly one or more cells shed by parents ex- underwear and wheat husks; store in impressed with the phenomena of plained how something could arise open-mouthed jar for 21 days; the generation. -
Biological Conservation 228 (2018) 310–318
Biological Conservation 228 (2018) 310–318 Contents lists available at ScienceDirect Biological Conservation journal homepage: www.elsevier.com/locate/biocon Multi-scale effects of land cover and urbanization on the habitat suitability of an endangered toad T ⁎ Michael L. Tregliaa, , Adam C. Landonb,c,1, Robert N. Fisherd, Gerard Kyleb, Lee A. Fitzgeralda a Department of Wildlife and Fisheries Sciences, Biodiversity Research and Teaching Collections, Applied Biodiversity Science Program, Texas A&M University, College Station, TX 77843-2258, USA b Human Dimensions of Natural Resources Lab, Department of Recreation, Parks, and Tourism Sciences, Texas A&M University, College Station, TX 77843-2261, USA c Water Management and Hydrological Science Program, Texas A&M University, College Station, TX 77843-3408, USA d U.S. Geological Survey, Western Ecological Research Center, San Diego Field Station, San Diego, CA, USA ARTICLE INFO ABSTRACT Keywords: Habitat degradation, entwined with land cover change, is a major driver of biodiversity loss. Effects of land cover Watersheds change on species can be direct (when habitat is converted to alternative land cover types) or indirect (when Structural equation model land outside of the species habitat is altered). Hydrologic and ecological connections between terrestrial and California aquatic systems are well understood, exemplifying how spatially disparate land cover conditions may influence Arroyo toad aquatic habitats, but are rarely examined. We sought to quantify relative effects of land cover at two different but Anaxyrus californicus interacting scales on habitat suitability for the endangered arroyo toad (Anaxyrus californicus). Based on an Anthropogenic development ff Riparian areas existing distribution model for the arroyo toad and available land cover data, we estimated e ects of land cover along streams and within entire watersheds on habitat suitability using structural equation modeling. -
This Article Appeared in a Journal Published by Elsevier. the Attached
(This is a sample cover image for this issue. The actual cover is not yet available at this time.) This article appeared in a journal published by Elsevier. The attached copy is furnished to the author for internal non-commercial research and education use, including for instruction at the authors institution and sharing with colleagues. Other uses, including reproduction and distribution, or selling or licensing copies, or posting to personal, institutional or third party websites are prohibited. In most cases authors are permitted to post their version of the article (e.g. in Word or Tex form) to their personal website or institutional repository. Authors requiring further information regarding Elsevier’s archiving and manuscript policies are encouraged to visit: http://www.elsevier.com/copyright Author's personal copy Toxicon 60 (2012) 967–981 Contents lists available at SciVerse ScienceDirect Toxicon journal homepage: www.elsevier.com/locate/toxicon Antimicrobial peptides and alytesin are co-secreted from the venom of the Midwife toad, Alytes maurus (Alytidae, Anura): Implications for the evolution of frog skin defensive secretions Enrico König a,*, Mei Zhou b, Lei Wang b, Tianbao Chen b, Olaf R.P. Bininda-Emonds a, Chris Shaw b a AG Systematik und Evolutionsbiologie, IBU – Fakultät V, Carl von Ossietzky Universität Oldenburg, Carl von Ossietzky Strasse 9-11, 26129 Oldenburg, Germany b Natural Drug Discovery Group, School of Pharmacy, Medical Biology Center, Queen’s University, 97 Lisburn Road, Belfast BT9 7BL, Northern Ireland, UK article info abstract Article history: The skin secretions of frogs and toads (Anura) have long been a known source of a vast Received 23 March 2012 abundance of bioactive substances. -
Arroyo Toad (Anaxyrus Californicus) Life History, Population Status, Population
Arroyo Toad (Anaxyrus californicus) Life History, Population Status, Population Threats, and Habitat Assessment of Conditions at Fort Hunter Liggett, Monterey County, California A Thesis presented to the Faculty of California Polytechnic State University, San Luis Obispo In Partial Fulfillment of the Requirements for the Degree Master of Science in Biology by Jacquelyn Petrasich Hancock December 2009 © 2009 Jacquelyn Petrasich Hancock ALL RIGHTS RESERVED ii COMMITTEE MEMBERSHIP TITLE: Arroyo Toad (Anaxyrus californicus) Life History, Population Status, Population Threats, and Habitat Assessment of Conditions at Fort Hunter Liggett, Monterey County, California AUTHOR: Jacquelyn Petrasich Hancock DATE SUBMITTED: December 2009 COMMITTEE CHAIR: David Pilliod, PhD COMMITTEE MEMBER: Emily Taylor, PhD COMMITTEE MEMBER: Scott Steinmaus, PhD iii Abstract Arroyo Toad (Anaxyrus californicus) Life History, Population Status, Population Threats, and Habitat Assessment of Conditions at Fort Hunter Liggett, Monterey County, California Jacquelyn Petrasich Hancock The arroyo toad (Anaxyrus californicus) is a federally endangered species found on Fort Hunter Liggett, Monterey County, California. The species was discovered in 1996 and was determined to occupy 26.7 km of the San Antonio River from approximately 2.4 km northwest of the San Antonio Mission de Padua, to the river delta above the San Antonio Reservoir. The construction of the San Antonio Reservoir dam in 1963 isolated this northern population of arroyo toads. Through time, the Fort Hunter Liggett landscape has changed drastically. The land was heavily grazed by cattle until 1991, which considerably reduced vegetation in riparian areas. Military training following acquisition of the land in 1940 far exceeded current allowable training. Fire was used extensively to reduce unfavorable vegetation, and as a result, extreme tree loss occurred through the ranges. -
UCLA UCLA Electronic Theses and Dissertations
UCLA UCLA Electronic Theses and Dissertations Title Macroparasite Study of Cypriniform fishes in the Santa Clara Drainage Permalink https://escholarship.org/uc/item/3kp0q16j Author Murray, Max DeLonais Publication Date 2019 Peer reviewed|Thesis/dissertation eScholarship.org Powered by the California Digital Library University of California UNIVERSITY OF CALIFORNIA Los Angeles Macroparasite Study of Cypriniform fishes in the Santa Clara Drainage A thesis submitted in partial satisfaction of the requirements for the degree Master of Science in Biology by Max DeLonais Murray 2019 © Copyrite by Max DeLonais Murray 2019 ABSTRACT OF THE THESIS Macroparasite Study of Cypriniform fishes in the Santa Clara Drainage by Max DeLonais Murray Master of Science in Biology University of California, Los Angeles, 2019 Professor Donald G. Buth, Chair Several species of fishes have been introduced into the Santa Clara River system in southern California, including Catostomus santaanae (Santa Ana sucker), Catostomus fumeiventris (Owens sucker), Gila orcutti (arroyo chub), and Pimephales promelas (fathead minnow). These species are known to inhabit similar ecological niches but little is known about their associated parasite fauna. Two C. fumeiventris, 35 C. santaanae, 63 hybrid catostomids, 214 G. orcutti, and 18 P. promelas were collected and necropsied in the summers of 2017 and 2018. Nine macroparasite taxa were harvested including seven native, and two nonnative parasites Schyzocotyle acheilognathi (Asian fish tapeworm) and Lernaea cyprinacea (anchor worm). Prevalence and intensity of parasites were not related to the genetic history of these catostomids. This is the first host-association record for G. orcutti with Gyrodactylus sp., S. acheilognathi, ii diplostomid metacercariae, Rhabdochona sp, Contracaecum sp., and larval acuariid cysts and for P. -
Learning in the Land Snail (Helix Aspers a Mliller)*
Bulletin of the Psychonomic Society 1974, Vol. 4 (SA), 476-478 Learning in the land snail (Helix aspers a Mliller)* R. K. SIEGEL and M. E. JARVIK Departments of Pharmacology and Psychiatry, University of California, Los Angeles Los Angeles, California 90024 A group of two experiments are discussed which demonstrate avoidance learning in land snails. Experiment I utilized the snail's negative geotaxis and its chemoreceptive characteristics and required the snail to climb a vertical pole which contained a quinine-saturated loop of thread at the top. Experiment II substituted electric shock loops for the quinine. Snails in both experimental groups manifested progressively increasing climbing latencies and avoidance responses throughout five successive training sessions and a one week retention test. Control animals which received noncontingent quinine or shock did not show evidence of learning. These results provide evidence of rapid avoidance learning in gastropod mollusks. Very few investigators have examined the problem of employed a pole-climbing response with quinine as an learning in snails (see reviews by Stephens & McGaugh, aversive stimulus at the top of the pole. These authors 1972; Willows, 1973). Early workers have suggested that demonstrated both short- and long-term memory of the these gastropods show evidence of classical conditioning aversive experience as well as habituation of the climbing (Thompson, 1917), maze learning (Garth & Mitchell, response itself with a neutral water stimulus. This 1926; Fischel, 1931), and habituation (Humphrey, learning appeared to be modifiable by length of 1930; Grindley, 1937). The phenomenon of classical laboratory housing, humidity, nutrition, and conditioning in snails has been recently reexamined by reproductive conditions.