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Advances in Wheat Genetics: from Genome to Field Proceedings of the 12Th International Wheat Genetics Symposium Advances in Wheat Genetics: from Genome to Field Yasunari Ogihara · Shigeo Takumi Hirokazu Handa Editors Advances in Wheat Genetics: From Genome to Field Proceedings of the 12th International Wheat Genetics Symposium Advances in Wheat Genetics: From Genome to Field Yasunari Ogihara • Shigeo Takumi Hirokazu Handa Editors Advances in Wheat Genetics: From Genome to Field Proceedings of the 12th International Wheat Genetics Symposium Editors Yasunari Ogihara Shigeo Takumi Kihara Institute for Biological Research Graduate School of Agricultural Sciences Yokohama City University Kobe University Yokohama , Kanagawa , Japan Kobe , Hyogo , Japan Hirokazu Handa Plant Genome Research Unit National Institute of Agrobiological Sciences Tsukuba , Ibaraki , Japan ISBN 978-4-431-55674-9 ISBN 978-4-431-55675-6 (eBook) DOI 10.1007/978-4-431-55675-6 Library of Congress Control Number: 2015949398 Springer Tokyo Heidelberg New York Dordrecht London © The Editor(s) (if applicable) and the Author(s) 2015 . The book is published with open access at SpringerLink.com. Open Access This book is distributed under the terms of the Creative Commons Attribution Non- commercial License, which permits any noncommercial use, distribution, and reproduction in any medium, provided the original author(s) and source are credited. All commercial rights are reserved by the Publisher, whether the whole or part of the material is concerned, specifi cally the rights of translation, reprinting, reuse of illustrations, recitation, broadcasting, reproduction on microfi lms or in any other physical way, and transmission or information storage and retrieval, electronic adaptation, computer software, or by similar or dissimilar methodology now known or hereafter developed. The use of general descriptive names, registered names, trademarks, service marks, etc. in this publication does not imply, even in the absence of a specifi c statement, that such names are exempt from the relevant protective laws and regulations and therefore free for general use. The publisher, the authors and the editors are safe to assume that the advice and information in this book are believed to be true and accurate at the date of publication. Neither the publisher nor the authors or the editors give a warranty, express or implied, with respect to the material contained herein or for any errors or omissions that may have been made. Printed on acid-free paper Springer Japan KK is part of Springer Science+Business Media (www.springer.com) Sponsors We would like to acknowledge the following organizations and companies for their sponsorship of the 12th International Wheat Genetics Symposium. v Pref ace This volume of proceedings is a collection of papers that were presented at the 12th International Wheat Genetics Symposium (IWGS) held in Yokohama, Japan, September 8–14, 2013, containing a selection of invited lectures and representative presentations. All papers were peer-reviewed by the Local Organizing Committee. On August 29, 1953, 26 wheat geneticists from 19 countries who got together at the 9th International Congress of Genetics held at Bellagio, Italy, initiated the International Organizing Committee of the 1st IWGS. In 1958, the 1st symposium, which Hitoshi Kihara chaired, was held in Winnipeg, Canada. Since then, the IWGS has been held every 5 years at different locations around the world. In 2013, the IWGS turned 60 years old, an age of great traditional importance in East Asia. This volume commemorates an occasion of special celebration. This proceedings presents the current status of our understanding of wheat genet- ics and its application to cultivated wheat and related plants. Importantly, it shows that breeding wheat based on genetics has come of age. Despite the large genome size and complexity, molecular breeding has become much more realistic than ever in wheat mainly through development in genomics research. In addition, the global food crisis and the impact of climate change on the food chain have become press- ing problems. Consequently, improved production of cereals including wheat is urgently required in order to increase yields for human consumption. The produc- tion of wheat is particularly important in this regard as it is the most widely grown crop. We hope that this volume will provide a useful research reference in the fi eld of wheat genetics. The editors wish to thank Dr. Shuhei Nasuda, who fi rst suggested the idea of preparing this book and collaborated in its initial planning. The editors are also very grateful to Dr. Yoshihiro Matsuoka for his valuable help in the editing work. Yokohama , Japan Yasunari Ogihara Kobe , Japan Shigeo Takumi Tsukuba , Japan Hirokazu Handa vii List of the Meetings of International Wheat Genetics Symposium Held to Date I. Winnipeg, Canada, 1958 II. Lund, Sweden, 1963 III. Canberra, Australia, 1968 IV. Columbia, Missouri, USA, 1973 V. New Delhi, India, 1978 VI. Kyoto, Japan, 1983 VII. Cambridge, UK, 1988 VIII. Beijing, China, 1993 IX. Saskatoon, Canada, 1998 X. Paestum, Italy, 2003 XI. Brisbane, Australia, 2008 XII. Yokohama, Japan, 2013 ix Contents Part I Wheat Genetics: Past, Present, and Future 1 Prof. H. Kihara’s Genome Concept and Advancements in Wheat Cytogenetics in His School .................................................... 3 Koichiro Tsunewaki 2 How a Gene from Japan Revolutionized the World of Wheat: CIMMYT’s Quest for Combining Genes to Mitigate Threats to Global Food Security ......................................................................... 13 Thomas A. Lumpkin Part II Germplasm and Genetic Diversity 3 Genetic Resources of Triticum ............................................................... 23 Karl Hammer and Helmut Knüpffer 4 Development of Core Set of Wheat ( Triticum spp .) Germplasm Conserved in the National Genebank in India ............... 33 Manoranjan Dutta , B. S. Phogat , Sandeep Kumar , Naresh Kumar , Jyoti Kumari , Avinash C. Pandey , T. P. Singh , R. K. Tyagi , Sherry R. Jacob , Kalyani Srinivasan , I. S. Bisht , M. Karale , Mamata Yadav , Pankaj Sharma , Geeta Kumari , Tariq Aftab , Y. S. Rathi , Amit K. Singh , Sunil Archak , K. V. Bhat , D. C. Bhandari , Y. P. S. Solanki , Dhiraj Singh , and Kailash C. Bansal 5 Transfer to Wheat of Potentially New Stem Rust Resistance Genes from Aegilops speltoides ........................................... 47 Ian Dundas , Dawn Verlin , Peng Zhang , Yue Jin , Jacob Manisterski , and Rafi qul Islam xi xii Contents 6 Genetic Variation and Its Geographical Distribution in Aegilops caudata L.: Morphology, Hybrid Sterility and Gametocidal Genes ......................................................................... 53 Shoji Ohta and Naomi Yasukawa Part III Cytogenetics and Allopolyploid Evolution 7 Wheat Chromosome Analysis ............................................................... 65 Bikram S. Gill 8 New Aneuploids of Common Wheat ..................................................... 73 Takashi R. Endo 9 Chromosomal Changes over the Course of Polyploid Wheat Evolution and Domestication .................................................... 83 Ekaterina D. Badaeva , Olga S. Dedkova , V. A. Pukhalskyi , and A. V. Zelenin Part IV Toward Whole Genome Sequencing 10 Comprehensive Functional Analyses of Expressed Sequence Tags in Common Wheat ........................................................ 93 Yasunari Ogihara , Kohei Mishina , Kanako Kawaura , Hiroshi Tarui , Keiichi Mochida , Kentaro Yano , and Jun Kawai 11 Development of the BAC Physical Maps of Wheat Chromosome 6B for Its Genomic Sequencing ..................................... 101 Fuminori Kobayashi , Satoshi Katagiri , Wataru Karasawa , Yumiko Hanawa , Hiroyuki Kanamori , Yukiyo Ito , Hiroko Fujisawa , Yoshiyuki Mukai , Tsuyoshi Tanaka , Satoko Kaneko , Shota Watanabe , Toyotaka Sakaguchi , Shuhei Nasuda , Katsuyuki Hayakawa , Chikako Abe , Ryoko Ohno , Julio C. M. Iehisa , Shigeo Takumi , Jaroslav Doležel , Yasunari Ogihara , Takashi Matsumoto , Yuichi Katayose , Jianzhong Wu , and Hirokazu Handa Part V Structural and Functional Genomics 12 Sequencing of Wheat Chromosome 6B: Toward Functional Genomics ............................................................................. 111 Tsuyoshi Tanaka , Fuminori Kobayashi , Giri Prasad Joshi , Ritsuko Onuki , Hiroaki Sakai , Hiroyuki Kanamori , Jianzhong Wu , Hana Šimková , Shuhei Nasuda , Takashi R. Endo , Katsuyuki Hayakawa , Jaroslav Doležel , Yasunari Ogihara , Takeshi Itoh , Takashi Matsumoto , and Hirokazu Handa Contents xiii 13 Genetic Mechanisms of Vernalization Requirement Duration in Winter Wheat Cultivars .................................................... 117 Liuling Yan , Genqiao Li , Ming Yu , Tilin Fang , Shuanghe Cao , and Brett F. Carver 14 Building Ultra-Dense Genetic Maps in the Presence of Genotyping Errors and Missing Data .............................................. 127 Y e fi m Ronin , Dina Minkov , David Mester , Eduard Akhunov , and Abraham Korol Part VI Functional Gene Analysis and Molecular Tools 15 Exploiting Comparative Biology and Genomics to Understand a Trait in Wheat, Ph1 ................................................... 137 Graham Moore 16 The Specific Features of Anthocyanin Biosynthesis Regulation in Wheat............................................................................... 147 Olesya Y. Shoeva and Elena K. Khlestkina 17 Association of Wheat miRNAs with Hybrid Incompatibility in Interspecific Crosses of Triticum and Aegilops ................................ 159 Shigeo Takumi , Ryusuke Matsuda , and Julio C. M. Iehisa 18 High Efficiency Wheat Transformation
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