Biological Evaluation of Some Selected Plant Species of Pakistan

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Biological Evaluation of Some Selected Plant Species of Pakistan Biological Evaluation of Some Selected Plant Species of Pakistan By Samia Inayatullah Department of Biochemistry Quaid-i-Azam University Islamabad, Pakistan 2009 Biological Evaluation of Some Selected Plant Species of Pakistan Submitted by Samia Inayatullah Thesis submitted to The Department of Biochemistry Quaid-i-Azam University Islamabad In the partial fulfillment of the requirements for the degree of Doctor of Philosophy In Biochemistry/ Molecular Biology Department of Biochemistry Quaid-i-Azam University Islamabad-Pakistan 2009 Certificate This thesis submitted by Samia Inayatullah is accepted in its present form by the Department of Biochemistry, Quaid-i-Azam University Islamabad as satisfying the thesis requirement for the degree of Doctor of Philosophy in Biochemistry/ Molecular Biology. Supervisor:………………………. Dr. Bushra Mirza External Examiner: ……………… External Examiner :……………… Chairman: ………………….. Dated:……………. Declaration I hereby declare that the work presented in this thesis is my own effort except where other acknowledged and that the thesis is my own composition. No part of the thesis has previously been presented for any other degree. Samia Inayatullah In the name of Allah, the Beneficent, the Merciful “With Him are the keys of the unseen, the treasures that none knoweth but He. He knoweth whatever there is on the earth and in the sea. Not a leaf doth fall but with His knowledge. There is not a grain in the darkness (or depths) of the earth, nor anything fresh or dry (green or withered) but is (inscribed) in a record clear (to those who can read).” (VI. 59) To my beloved parents List of Contents Acknowledgements I List of tables III List of figures IV List of abbreviations VII Abstract IX Chapter 1 Introduction……………………………………………………………1 1: Drug discovery strategy………………………………………………………...2 1.1 : Selection of plant material…………………………………………………...3 1.2: Preparation of plant extracts………………………………………………....8 1.3: Biological screening of plant extracts…………………………………………9 1.3.1: Antimicrobial assays…………………………………………………….10 1.3.2: Toxicity assays…………………………………………………………...16 1.3.3: Antitumor potato disc assay…………………………………………….17 1.3.4: Antioxidant assays……………………………………………………….18 Determination of total phenolic contents………………………………...19 a. Antioxidant assays in aqueous system……………………………………....20 b. Antioxidant assays in lipid system…………………………………………..22 1.4: Bioassay guided fractionation of selected plant extracts .………………......23 1.5: Identification of components of plant extracts by analytical scale HPLC equipped with UV-DAD as well as LC-MS………………………….23 1: Chromatography…………………………………………………………….23 2: Liquid chromatography-mass spectrometry (LC-MS)……………………32 Chapter 2 Antimicrobial, toxicity and antitumor activities……………………...34 Introduction………………………………………………………………………..34 Materials and methods……………………………………………………………...35 2.1: Collection of plant material…………………………………………………….35 2.2: Preparation of plant extracts……………………………………………….......35 2.3: Antimicrobial assays…………………………………………………………….35 2.4: Toxicity assays…………………………………………………………………...38 2.5: Antitumor potato disc assay……………………………………………………39 2.6: Antibacterial assay against Agrobacterium tumefaciens……………………...40 Results…………………………………………………………………………………..41 2.1: Antimicrobial assays…………………………………………………………....41 2.2: Toxicity assays…………………………………………………………………..41 2.3: Antitumor potato disc assay…………………………………………………...46 2.4: Antibacterial assay against Agrobacterium tumefaciens……………………..46 Conclusion……………………………………………………………………......52 Chapter 3 Antioxidant activities…………………………………………………........53 Introduction…………………………………………………………………………...53 Materials and methods…………………………………………………………….....54 3.1: Determination of total phenolic contents……………………………………54 3.2: Antioxidant activity……………………………………………………………55 3.2.1: DPPH assay (1,1- Diphenyl-2-picryl-hydrazyl radical)………………..55 3.2.2: Calculation of EC50 value………………………………………………..56 3.2.3: ABTS+ Assay……………………………………………………………..56 3.2.4: TBARS (Thiobarbituric acid reactive substances) assay……………..57 3.3: DNA protection assay………………………………………………………...58 Results…………………………………………………………………………………...59 3.1: Determination of total phenolic contents……………………………………..59 3.2: Statistical analysis……………………………………………………………..59 3.3: DPPH scavenging activity…………………………………………………….63 3.4: ABTS+ assay…………………………………………………………………...63 3.5: TBARS (Thiobarbituric acid reactive substances) assay…………………..64 3.6: DNA protection assay………………………………………………………..74 Conclusion…………………………………………………………………………..74 Chapter 4 Semi-preparative HPLC………………………………………………….76 Introduction…………………………………………………………………………..76 Materials and methods……………………………………………………………….78 4.1: Preparation of samples……………………………………………………...78 4.2: Spectrophotometric scanning of hexane washes and extracts……………78 4.3: Semi-preparative HPLC…………………………………………………….78 4.3.1: Sample Preparation……………………………………………………….78 4.3.2: Method development for semi-preparative HPLC……………………...78 4.3.3: Optimization of conditions for semi-preparative HPLC of (L+F) S. nubicola………………………………………………………………….79 4.3.4: Method for fractionation……………………………………………….......81 4.4: Determination of total phenolic contents of fractions……………………82 4.5: Antioxidant activity of fractions……………………………………….. …82 Results………………………………………………………………………….83 4.1: Spectrophotometric scanning of hexane washes and crude extracts….83 4.2: Semi-preparative HPLC…………………………………………………86 4.2.1: Method development for semi-preparative HPLC…………………..86 4.3: Determination of total phenolic contents for three fractions………...94 4.4: Antioxidant activity of fractions………………………………………..94 Conclusion………………………………………………………………….99 Chapter 5 Identification of phenolic compounds…………………………………100 Introduction……………………………………………………………………...100 Materials and methods……………………………………………………..........101 5.1: Preparation of samples…………………………………………………...101 5.2: Preparation of standard…………………………………………….........101 5.3: Analytical scale HPLC……………………………………………………101 5.3.1: HPLC Method…………………………………………………........101 5.3.2: Regression lines for five external standards………………………102 5.3.3: Quantification of various peaks……………………………………102 5.4: LC-MS (Liquid chromatography mass spectrometry)……………........103 5.5: Identification of phenolic components in crude plant extracts………...103 Results………………………………………………………………………….105 5.1: Analytical scale HPLC……………………………………………….105 5.2: Regression lines for five external standards by using analytical scale HPLC…………………………………………………………………112 5.3: Quantification of various peaks……………………………………..112 5.4: LC-MS (liquid chromatography mass spectrometry)……………...118 5.5: Identification of phenolic compounds………………………………126 Conclusion……………………………………………………………...135 Chapter 6 Discussion………………………………………………………………..136 Conclusion…………………………………………………………………..143 References…………………………………………………………………..144 ACKNOWLEDGEMENTS I offer my humblest thanks to Almighty Allah who enabled me to make some material contribution to the preexisting ocean of knowledge and thoughts. All blessings and respects are for our beloved Prophet Muhammad (PBUH) whose teachings guide us towards light of knowledge. I am thankful to Higher Education Commission Pakistan for their scholarship throughout my research project and I am thankful to their IRSIP program which supported me while my visit to CSU, Australia. I want to offer my thanks to Dr. Fayyaz Ahmed Choudhary, Dean, Faculty of Biological Sciences for provision of research facilities in the department. I ardently extend my thanks to Dr. Waseem Ahmed, Chairman, Department of Biochemistry, Quiad-i-Azam University, for providing research facilities in the department. My reverent and gratitude is for my honourable supervisor Dr. Bushra Mirza, Associate Professor, Department of Biochemistry, Quaid-i-Azam University, whose dynamic supervision, keen interest, illustrious advice, philanthropic attitude and encouragement throughout my research work enabled me to achieve my goals. Dr. Bushra Mirza is that School for me who taught me confidence, enthusiasm and consistency. She has always been a very encouraging person. She always helped me while discussing research proposals. I am really inspired by her intelligence. I want to offer my thanks to Dr. Atta-ur-Rehman, Molecular Biologist, CSU, Australia who has been a very good host and supervisor during my visit to CSU Australia. I am thankful to his wife Alvina and all his children for giving me good company and hosting me. I have no words to pay my thanks to Dr. Paul Prenzlar, Senior lecturer, CSU, Australia whose constant help and encouragement helped me to achieve my goals during my visit. I want to offer my special thanks to Dr. Hassan Obeid, lecturer, CSU, Australia, whose guidance helped me to complete my research project in Australia. I am thankful to lab staff at Chemistry laboratory, CSU, Australia, and my friends April Cao, Long and Laura Rustioni who always gave me company and helped to extend my little knowledge. I I offer my sincerest thanks to my friends and lab fellows and all others for their help and kind attitude. I wish to express my appreciation and sense of gratitude from the citadel of my heart to my parents, brother and sisters for their cooperation and encouragement. Samia Inayatullah II List of Tables Table 2.1 List of plant species with respective plant extracts 36 Table 2.2 Antibacterial activity of methanol extract of leaf and stem of A. oblongifolium against six bacterial strains 42 Table 2.3 Percentage inhibition of crude extracts of five different species against six fungal strains 44 Table 2.4 Illustration of % age mortality
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