Social Behavior in a Group of Captive Bobcats : a Study in the Sociability of Felids
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Correlated Evolution in the Small Parsimony Framework*
bioRxiv preprint doi: https://doi.org/10.1101/2021.01.26.428213; this version posted July 3, 2021. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. Correlated Evolution in the Small Parsimony Framework? Brendan Smith1, Cristian Navarro-Martinez1, Rebecca Buonopane1, S. Ashley Byun1, and Murray Patterson2[0000−0002−4329−0234] 1 Fairfield University, Fairfield CT 06824, USA fbrendan.smith1, rebecca.buonopane, [email protected] [email protected] 2 Georgia State University, Atlanta GA 30303, USA [email protected] Abstract. When studying the evolutionary relationships among a set of species, the principle of parsimony states that a relationship involving the fewest number of evolutionary events is likely the correct one. Due to its simplicity, this principle was formalized in the context of computational evolutionary biology decades ago by, e.g., Fitch and Sankoff. Because the parsimony framework does not require a model of evolution, unlike maximum likelihood or Bayesian approaches, it is often a good starting point when no reasonable estimate of such a model is available. In this work, we devise a method for detecting correlated evolution among pairs of discrete characters, given a set of species on these char- acters, and an evolutionary tree. The first step of this method is to use Sankoff's algorithm to compute all most parsimonious assignments of an- cestral states (of each character) to the internal nodes of the phylogeny. Correlation between a pair of evolutionary events (e.g., absent to present) for a pair of characters is then determined by the (co-) occurrence pat- terns between the sets of their respective ancestral assignments. -
Coyote Canis Latrans in 2007 IUCN Red List (Canis Latrans)
MAMMALS OF MISSISSIPPI 10:1–9 Coyote (Canis latrans) CHRISTOPHER L. MAGEE Department of Wildlife and Fisheries, Mississippi State University, Mississippi State, Mississippi, 39762, USA Abstract—Canis latrans (Say 1823) is a canid commonly called the coyote. It is dog-like in appearance with varied colorations throughout its range. Originally restricted to the western portion of North America, coyotes have expanded across the majority of the continent. Coyotes are omnivorous and extremely adaptable, often populating urban and suburban environments. Preferred habitats include a mixture of forested, open, and brushy areas. Currently, there exist no threats or conservation concerns for the coyote in any part of its range. This species is currently experiencing an increasing population trend. Published 5 December 2008 by the Department of Wildlife and Fisheries, Mississippi State University Coyote location (Jackson 1951; Young 1951; Berg and Canis latrans (Say, 1823) Chesness 1978; Way 2007). The species is sexually dimorphic, with adult females distinctly CONTEXT AND CONTENT. lighter and smaller than adult males (Kennedy Order Carnivora, suborder Caniformia, et al. 2003; Way 2007). Average head and infraorder Cynoidea, family Canidae, subfamily body lengths are about 1.0–1.5 m with a tail Caninae, tribe Canini. Genus Canis consists length of about Young 1951). The skull of the of six species: C. aureus, C. latrans, C. lupus, coyote (Fig. 2) progresses through 6 distinct C. mesomelas, C. simensis, and C. adustus. developmental stages allowing delineation Canis latrans has 19 recognized subspecies between the age classes of juvenile, immature, (Wilson and Reeder 2005). young, young adult, adult, and old adult (Jackson 1951). -
Exploiting Interspecific Olfactory Communication to Monitor Predators
Ecological Applications, 27(2), 2017, pp. 389–402 © 2016 by the Ecological Society of America Exploiting interspecific olfactory communication to monitor predators PATRICK M. GARVEY,1,2 ALISTAIR S. GLEN,2 MICK N. CLOUT,1 SARAH V. WYSE,1,3 MARGARET NICHOLS,4 AND ROGER P. PECH5 1Centre for Biodiversity and Biosecurity, School of Biological Sciences, University of Auckland, Auckland, New Zealand 2Landcare Research, Private Bag 92170, Auckland, 1142 New Zealand 3Royal Botanic Gardens Kew, Wakehurst Place, RH17 6TN United Kingdom 4Centre for Wildlife Management and Conservation, Lincoln University, Canterbury, New Zealand 5Landcare Research, PO Box 69040, Lincoln, 7640 New Zealand Abstract. Olfaction is the primary sense of many mammals and subordinate predators use this sense to detect dominant species, thereby reducing the risk of an encounter and facilitating coexistence. Chemical signals can act as repellents or attractants and may therefore have applications for wildlife management. We devised a field experiment to investigate whether dominant predator (ferret Mustela furo) body odor would alter the behavior of three common mesopredators: stoats (Mustela erminea), hedgehogs (Erinaceus europaeus), and ship rats (Rattus rattus). We predicted that apex predator odor would lead to increased detections, and our results support this hypothesis as predator kairomones (interspecific olfactory messages that benefit the receiver) provoked “eavesdropping” behavior by mesopredators. Stoats exhib- ited the most pronounced responses, with kairomones significantly increasing the number of observations and the time spent at a site, so that their occupancy estimates changed from rare to widespread. Behavioral responses to predator odors can therefore be exploited for conserva- tion and this avenue of research has not yet been extensively explored. -
In the Mood Deer Have a Way of Advertising Their Wares and the Whereabouts– Scent, Sounds, and Body Language
A buck simulates reproductive response with flehman or lip curling to expose his vomeronasal organ to scent of a female’s urination. (frame from Quality Deer Management Assoc. video) In the Mood Deer have a way of advertising their wares and the whereabouts– scent, sounds, and body language J. Morton Galetto, CU Maurice River Last October I wrote an article about deer that included some aspects of their mating habits. It described mate guarding and the male deer or buck’s propensity to focus on following a female in estrus so as to insure he is the lucky suitor. During rut or the breeding season, when males spar competitively for reproductive rights over females, deer are on the move. The season begins in October and its height in our region is November 10- 20. Females that are not successfully fertilized will come into estrus a second time 28 days later, offering a second chance for them to produce young. All this moving around makes deer and drivers especially prone to road collisions. Bucks are particularly active during sunset and early morning. So slow down and stay alert. In last year’s story we offered lots of advice in this regard. White-tail deer are the local species here in Southern NJ. I thought it might be fun to talk about their indicators of lust – well, fun for me anyway. Deer employ three major methods of communications: scents, vocalizations, and body language. Deer are ungulates, meaning they are a mammal with a cloven hoof on each leg, split in two parts; you could describe them as toes or digits. -
Mammalian Pheromones – New Opportunities for Improved Predator Control in New Zealand
SCIENCE FOR CONSERVATION 330 Mammalian pheromones – new opportunities for improved predator control in New Zealand B. Kay Clapperton, Elaine C. Murphy and Hussam A. A. Razzaq Cover: Stoat in boulders in the Tasman River bed, Mackenzie Basin. Photo: John Dowding. Science for Conservation is a scientific monograph series presenting research funded by New Zealand Department of Conservation (DOC). Manuscripts are internally and externally peer-reviewed; resulting publications are considered part of the formal international scientific literature. This report is available from the departmental website in pdf form. Titles are listed in our catalogue on the website, refer www.doc.govt.nz under Publications, then Series. © Copyright August 2017, New Zealand Department of Conservation ISSN 1177–9241 (web PDF) ISBN 978–1–98–851436–9 (web PDF) This report was prepared for publication by the Publishing Team; editing by Amanda Todd and layout by Lynette Clelland. Publication was approved by the Director, Threats Unit, Department of Conservation, Wellington, New Zealand. Published by Publishing Team, Department of Conservation, PO Box 10420, The Terrace, Wellington 6143, New Zealand. In the interest of forest conservation, we support paperless electronic publishing. CONTENTS Abstract 1 1. Introduction 2 1.1 The potential roles of pheromones in New Zealand predator control 2 1.2 Aim of this review 4 2. Pheromone identification and function in mammalian predator species 5 2.1 Mice 5 2.2 Rats 7 2.3 Rodent Major Urinary Proteins (MUPs) 9 2.4 Cats 10 2.5 Mustelids 11 2.6 Possums (with reference to other marsupials) 13 3. Odour perception and expression 14 3.1 How do animals perceive odours? 14 3.2 Influence of the MHC 16 4. -
Olfactory Communication in the Ferret (Mustela Furo L.) and Its Application in Wildlife Management
Copyright is owned by the Author of the thesis. Permission is given for a copy to be downloaded by an individual for the purpose of research and private study only. The thesis may not be reproduced elsewhere without the permission of the Author. OLFACTORY COMMUNICATION IN THE FERRET (MUSTELA FURO L.) AND ITS APPLICATION IN WILDLIFE MANAGEMENT A Thesis Prepared in Partial Fulfilment of the Requirements for the Degree of Doctor of Philosophy in Zoology at Massey University Barbara Kay Clapperton 1985 �;·.;L��:"·;�� �is Copyrigj;lt Fonn Title:·J.;:E,:£j;esis: O\fgc:..�O("j CoW\I"'h.JA"lC,citQC\ � �� '�'Jd" � (�tJ.o.kgL.) � -\� C\�ic..Q;"er.. \h wA�·�. (1) ta.W-:> I give permission for my thesis to be rrede a���;�d�� .. -; ':: readers in the Massey University Library under conditi¥?� . C • determined by the Librarian. ; �dO n�t�sh my..,):hesi�o be�de�ai�e � _ _ re er/l.thout""my wmtten c6nse� for _ -<-L_ nths. ' ... ' � (2 ) �l.--.::�;. I � t � thej>'is, ov& c0er. rrej0Se s� ¥ I :.. an �r n�t ' ut ¥1h undef'condrtion srdeterdU.n6§. � t e rarl. I do not wish my thesis, or a copy, to be sent to another institution without my written consent for 12 nonths. (3 ) I agree that my thesis rrey be copied for Library use.: . �� ... Signed �,t. .... : B K Clappe n ;" Date (� �v � ; .. \, The cct1m�t of this thesis belongs to the author. Readers must sign t��::�arre in the space below to show that they recognise this. lmy· · are asked to add their perm:ment address. -
Volatile Cues Influence Host-Choice in Arthropod Pests
animals Review Volatile Cues Influence Host-Choice in Arthropod Pests Jacqueline Poldy Commonwealth Scientific and Industrial Research Organisation, Health & Biosecurity, Black Mountain Laboratory, Canberra, ACT 2601, Australia; [email protected]; Tel.: +61-2-6218-3599 Received: 1 October 2020; Accepted: 22 October 2020; Published: 28 October 2020 Simple Summary: Many significant human and animal diseases are spread by blood feeding insects and other arthropod vectors. Arthropod pests and disease vectors rely heavily on chemical cues to identify and locate important resources such as their preferred animal hosts. Although there are abundant studies on the means by which biting insects—especially mosquitoes—are attracted to humans, this focus overlooks the veterinary and medical importance of other host–pest relationships and the chemical signals that underpin them. This review documents the published data on airborne (volatile) chemicals emitted from non-human animals, highlighting the subset of these emissions that play a role in guiding host choice by arthropod pests. The paper exposes some of the complexities associated with existing methods for collecting relevant chemical features from animal subjects, cautions against extrapolating the ecological significance of volatile emissions, and highlights opportunities to explore research gaps. Although the literature is less comprehensive than human studies, understanding the chemical drivers behind host selection creates opportunities to interrupt pest attack and disease transmission, enabling more efficient pest management. Abstract: Many arthropod pests of humans and other animals select their preferred hosts by recognising volatile odour compounds contained in the hosts’ ‘volatilome’. Although there is prolific literature on chemical emissions from humans, published data on volatiles and vector attraction in other species are more sporadic. -
A Standardized Ethogram for the Felidae: User Guide
A Standardized Ethogram for the Felidae: User Guide 1. Behaviors Researchers should start by selecting which base behaviors should be used depending on the specific aim of their study. The titles of the base behaviors are written in bold text. If unsure of which behaviors to observe, researchers may consult the behavioral categories list for suggestions of which behaviors to measure. Additional information about the base behaviors is located directly below the definitions. This information either explains the behavior in further detail, or states other behaviors that may accompany the base behavior being discussed. If appropriate, the researcher may choose to include the additional information within their definition. If a researcher wishes to combine some behaviors to be scored together, as opposed to separately as they appear in the ethogram, it may be helpful to consult the behavioral categories, or create a new category and state which behaviors will be categorized within it. Additionally, a researcher can pull other behaviors into their definition at any time if they are to be scored together, so long as it is stated. Table 1. A standardized ethogram for the Felidae including definitions for all base behaviors. Title Definition Allogroom Cat licks the fur of another cat’s head or body. - In human-cat studies, this can be scored when a cat licks a human. Arch Back Cat curves back upwards and stands rigidly. - May be accompanied by piloerection. Approach Cat moves toward (modifier) while looking at it. Attack Cat launches itself at (modifier) with extended forelegs and attempts to engage in physical combat. -
STUDY of SNOW LEOPARD (Uncia Uncia) at PADMAJA NAIDU HIMALAYAN ZOOLOGICAL PARK , DARJEELING
STUDY OF SNOW LEOPARD (Uncia uncia) AT PADMAJA NAIDU HIMALAYAN ZOOLOGICAL PARK , DARJEELING. By Miss Shradhanjali Rai Page | 1 STUDY OF SNOW LEOPARD (Uncia uncia) AT PADMAJA NAIDU HIMALAYAN ZOOLOGICAL PARK, DARJEELING. Project Report on “Study of Snow leopard (Uncia uncia) at Padmaja Naidu Himalayan Zoological Park, Darjeeling” By Under Guidance of Mr. A.K. Jha, IFS Period - 22/03/2011 - 30/09/2013 STUDY OF SNOW LEOPARD (Uncia uncia) AT Page | 2 PADMAJA NAIDU HIMALAYAN ZOOLOGICAL PARK, DARJEELING. THE PROJECT IN BRIEF 1. Name of the Project: “Study of Snow leopard (Uncia uncia) at Padmaja Naidu Himalayan Zoological Park, Darjeeling” 2. Name of the Zoo/Organization: Padmaja Naidu Himalayan Zoological Park. 3. Project Letter: Sri.A.K.Jha IFS, Director, Padmaja Naidu Himalayan Zoological Park, Darjeeling. 4. Duration of the Project: From 22.03.2011-30.09.2013 5. Location of the Project: Padmaja Naidu Himalayan Zoological Park, Darjeeling. 6. Region/State: West Bengal. 7. Closest main city: Darjeeling. 8. Principal Investigator : Mr.A.K.Jha, IFS. 9. Research Associate : Miss Shradhanjali Rai. 10. Period to be spent on the Project from : For 48 hours /week for two and half years (Day/Momth/Year) 11. Total cost of the Project :Rs.8,40,000 12. Signature Padmaja Naidu Himalayan Zoological Park, Darjeeling. Signature: Signature: Signature Date Date Date Seal Seal Seal Page | 3 STUDY OF SNOW LEOPARD (Uncia uncia) AT PADMAJA NAIDU HIMALAYAN ZOOLOGICAL PARK, DARJEELING. ACKNOWLEDGEMENT The Project entitled “ Study of Snow Leopard at Padmaja Naidu Himalayan Zoo- logical Park, Darjeeling” under short term research grant by CZA was conducted by Miss Shradhanjali Rai, under the guidance of the undersigned from 22/11/2011 to 30/09/2013 which included further extension vide Memo No. -
Microanatomy and Bacterial Flora of the Perineal Glands of the North American Porcupine
59 Microanatomy and bacterial flora of the perineal glands of the North American porcupine U. Roze, K.T. Leung, E. Nix, G. Burton, and D.M. Chapman Abstract: The perineal glands of the porcupine, Erethizon dorsatum (L., 1758), are sexually dimorphic, paired pockets sprouting osmetrichial hairs. They lie between the anus and urethra, lateral to the midline, amid a sebaceous glandular ex- panse. In their active state, the glandular pockets secrete an amber substance with a terpenoid odor. When inactive, the glands produce no stain or odor. In males, activation of the glands is associated with fully descended testes. The glandular pockets yield a microbiota (‘‘microflora’’) in both their active and inactive states. We hypothesize that the active-state mi- croflora transforms a sebaceous secretion into a pheromonally active product that is disseminated by anal dragging. The glandular microflora was characterized by gas chromatography of bacterial fatty acid methyl esters (GC-FAME) and poly- merase chain reaction – denaturing gradient gel electrophoresis (PCR-DGGE) of 16S ribosomal RNA gene fragments of bacteria. PCR-DGGE results showed the resulting bacteria profiles were the same in both sexes, but differed between the active and inactive states. Active-state microfloras were dominated by members of the Actinobacteria and showed greater coefficients of similarity than inactive-state microfloras. The microflora of individual animals changed with time and with secretory state. We argue for a reproductive role for the activated perineal glands. Re´sume´ : Les glandes pe´rine´ales du porc-e´pic, Erethizon dorsatum (L., 1758), consistent en une paire de poches sexuelle- ment dimorphes d’ou` e´mergent des poils osme´trichiaux. -
Wild Fur Pelt Handling Manual Table of Contents
WILD FUR PELT HANDLING MANUAL TABLE OF CONTENTS Introduction 2 Raccoon 6 Beaver 12 North American Fur Auctions’ principal business is the sale of An organization of wild fur producers that strive to promote the raw fur pelts. The pelts are received on consignment from culture, heritage, and economic viability of fur harvesting through Beaver Castoreum/Castor 16 producers of ranched-raised furs and harvesters of wild furs. The an ownership position in North American Fur Auctions. Muskrat (Musquash) 18 fur pelts are sold to fur garment manufacturers and fur pelt dealers worldwide. The Company is the largest fur auction house Wild Fur Shippers Council, Respect for our past Commitment to Marten (Sable) 22 in North America, and the third largest fur auction in the world. the future. Fox & Coyote 24 Lynx and Lynx Cat (Bobcat) 28 CONTAC T INFORMATION CREDITS Fisher 30 NAFA Depots in the US NAFA Depots in CANADA Project Manager Content Writing: Andrew Hyde 205 Industrial Circle 65 Skyway Ave. Content Review Editing: Dave Bewick River Otter 32 Stoughton, WI 53589 Toronto ON, M9W 6C7 Squirrels & Weasels: Dave Bewick Tel: 608.205.9200 Tel: 416.675.9320 Content Review: Bill Mackowski Wild Mink 36 Wolves, Bears & Wolverines: Jim Gibb Wolves, Bears & Wolverines 38 Beaver Castor: Ron Lancour Graphic Designer: Luca Di Franco Skunk/Opossum 44 NAFA has large network of agents that collect in both Canada and USA. I would like to thank the NAFA grading staff for all the help they gave me to improve Badger 46 Contact us to find your closest agent. my understanding of the grading process, and how what we do as trappers can affect the grade and price of pelts. -
Wild Mammal Blog About Mammals, for Mammals, by Mammals
Wild Mammal Blog About Mammals, For Mammals, By Mammals Mammal Blog Downloads Digital Bat House Mammalogy Manual Vertebrate Biology Manual About Links Sitemap Mammalogy Techniques Manual, 2nd Edition The manual consists of 16 chapters covering topics such as radio and GPS tracking, mark and recapture studies, camera trapping studies, optimal foraging, behavioral studies, among others. Each chapter includes background information, student exercises, and sample data sets. 16 Chapters, 167 Figures, 282 pages, 30 Tables $39.95 Learn more here. Now available at Lulu.com, Amazon and Barnes & Noble Hyena Scent Posts Use Symbiotic Microbe Messengers 14 Nov 2013 Filed in: Carnivora | Communication | Behavior Twitter limits human communication to a mere 140 characters. Animals’ scent posts may be equally as short, relatively speaking, yet they convey an encyclopedia of information about the animals that left them. In the current issue of the Proceedings of the National Academy of Sciences, a Michigan State University researcher shows that the detailed scent posts of hyenas (Figure 1) are, in part, products of symbiotic bacteria, microbes that have a mutually beneficial relationship with their hosts. “When hyenas leave paste deposits on grass, the soursmelling signals relay reams of information for other animals to read,” said Kevin Theis, the paper’s lead author and MSU postdoctoral researcher. “Hyenas can leave a quick, detailed message and go. It’s like a bulletin board of who’s around and how they’re doing.” Figure 1. A spotted hyena scent marking. (courtesy of Michigan State University) Interestingly, it is the bacteria in pastes – more diverse than scientists had imagined – that appear to be doing the yeoman’s job of sending these messages.