A Standardized Ethogram for the Felidae: User Guide
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Correlated Evolution in the Small Parsimony Framework*
bioRxiv preprint doi: https://doi.org/10.1101/2021.01.26.428213; this version posted July 3, 2021. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. Correlated Evolution in the Small Parsimony Framework? Brendan Smith1, Cristian Navarro-Martinez1, Rebecca Buonopane1, S. Ashley Byun1, and Murray Patterson2[0000−0002−4329−0234] 1 Fairfield University, Fairfield CT 06824, USA fbrendan.smith1, rebecca.buonopane, [email protected] [email protected] 2 Georgia State University, Atlanta GA 30303, USA [email protected] Abstract. When studying the evolutionary relationships among a set of species, the principle of parsimony states that a relationship involving the fewest number of evolutionary events is likely the correct one. Due to its simplicity, this principle was formalized in the context of computational evolutionary biology decades ago by, e.g., Fitch and Sankoff. Because the parsimony framework does not require a model of evolution, unlike maximum likelihood or Bayesian approaches, it is often a good starting point when no reasonable estimate of such a model is available. In this work, we devise a method for detecting correlated evolution among pairs of discrete characters, given a set of species on these char- acters, and an evolutionary tree. The first step of this method is to use Sankoff's algorithm to compute all most parsimonious assignments of an- cestral states (of each character) to the internal nodes of the phylogeny. Correlation between a pair of evolutionary events (e.g., absent to present) for a pair of characters is then determined by the (co-) occurrence pat- terns between the sets of their respective ancestral assignments. -
Husbandry Guidelines for African Lion Panthera Leo Class
Husbandry Guidelines For (Johns 2006) African Lion Panthera leo Class: Mammalia Felidae Compiler: Annemarie Hillermann Date of Preparation: December 2009 Western Sydney Institute of TAFE, Richmond Course Name: Certificate III Captive Animals Course Number: RUV 30204 Lecturer: Graeme Phipps, Jacki Salkeld, Brad Walker DISCLAIMER The information within this document has been compiled by Annemarie Hillermann from general knowledge and referenced sources. This document is strictly for informational purposes only. The information within this document may be amended or changed at any time by the author. The information has been reviewed by professionals within the industry, however, the author will not be held accountable for any misconstrued information within the document. 2 OCCUPATIONAL HEALTH AND SAFETY RISKS Wildlife facilities must adhere to and abide by the policies and procedures of Occupational Health and Safety legislation. A safe and healthy environment must be provided for the animals, visitors and employees at all times within the workplace. All employees must ensure to maintain and be committed to these regulations of OHS within their workplace. All lions are a DANGEROUS/ HIGH RISK and have the potential of fatally injuring a person. Precautions must be followed when working with lions. Consider reducing any potential risks or hazards, including; Exhibit design considerations – e.g. Ergonomics, Chemical, Physical and Mechanical, Behavioural, Psychological, Communications, Radiation, and Biological requirements. EAPA Standards must be followed for exhibit design. Barrier considerations – e.g. Mesh used for roofing area, moats, brick or masonry, Solid/strong metal caging, gates with locking systems, air-locks, double barriers, electric fencing, feeding dispensers/drop slots and ensuring a den area is incorporated. -
STUDY of SNOW LEOPARD (Uncia Uncia) at PADMAJA NAIDU HIMALAYAN ZOOLOGICAL PARK , DARJEELING
STUDY OF SNOW LEOPARD (Uncia uncia) AT PADMAJA NAIDU HIMALAYAN ZOOLOGICAL PARK , DARJEELING. By Miss Shradhanjali Rai Page | 1 STUDY OF SNOW LEOPARD (Uncia uncia) AT PADMAJA NAIDU HIMALAYAN ZOOLOGICAL PARK, DARJEELING. Project Report on “Study of Snow leopard (Uncia uncia) at Padmaja Naidu Himalayan Zoological Park, Darjeeling” By Under Guidance of Mr. A.K. Jha, IFS Period - 22/03/2011 - 30/09/2013 STUDY OF SNOW LEOPARD (Uncia uncia) AT Page | 2 PADMAJA NAIDU HIMALAYAN ZOOLOGICAL PARK, DARJEELING. THE PROJECT IN BRIEF 1. Name of the Project: “Study of Snow leopard (Uncia uncia) at Padmaja Naidu Himalayan Zoological Park, Darjeeling” 2. Name of the Zoo/Organization: Padmaja Naidu Himalayan Zoological Park. 3. Project Letter: Sri.A.K.Jha IFS, Director, Padmaja Naidu Himalayan Zoological Park, Darjeeling. 4. Duration of the Project: From 22.03.2011-30.09.2013 5. Location of the Project: Padmaja Naidu Himalayan Zoological Park, Darjeeling. 6. Region/State: West Bengal. 7. Closest main city: Darjeeling. 8. Principal Investigator : Mr.A.K.Jha, IFS. 9. Research Associate : Miss Shradhanjali Rai. 10. Period to be spent on the Project from : For 48 hours /week for two and half years (Day/Momth/Year) 11. Total cost of the Project :Rs.8,40,000 12. Signature Padmaja Naidu Himalayan Zoological Park, Darjeeling. Signature: Signature: Signature Date Date Date Seal Seal Seal Page | 3 STUDY OF SNOW LEOPARD (Uncia uncia) AT PADMAJA NAIDU HIMALAYAN ZOOLOGICAL PARK, DARJEELING. ACKNOWLEDGEMENT The Project entitled “ Study of Snow Leopard at Padmaja Naidu Himalayan Zoo- logical Park, Darjeeling” under short term research grant by CZA was conducted by Miss Shradhanjali Rai, under the guidance of the undersigned from 22/11/2011 to 30/09/2013 which included further extension vide Memo No. -
Decaluwe Umd 0117E 13200.Pdf
ABSTRACT Title of Document: CHARACTERIZATION AND CONTROL OF AGGRESSION AND REPRODUCTION IN THE MALE CLOUDED LEOPARD (NEOFELIS NEBULOSA) Heather Burton DeCaluwe, Doctor of Philosophy, 2012 Directed By: Professor Mary Ann Ottinger, Department of Animal and Avian Sciences Clouded leopards are a striking and elusive cat species whose secretive nature has made it difficult to gather information on population statistics and behavior in the wild, where the population is in decline. While captive populations are intended as a hedge against extinction, breeding clouded leopards ex situ has been a challenge, primarily due to extreme male aggression toward females. Despite the importance of aggression in this species, there has as yet been no systematic study characterizing the basis of aggressive episodes. Two mechanisms seem to underlie the aggressive behavior in clouded leopards: degree of anxiety and circulating testosterone levels. Three studies were conducted to characterize mechanisms modulating aggression in male clouded leopards. In Study 1, sixteen adult male clouded leopards were categorized as ‘anxious’ or ‘calm’ using a keeper questionnaire and fecal endocrine (androgen and glucocorticoid) profiles; these measures were correlated with behavior rates and frequencies before, during, and after a series of behavioral reaction tests aimed at assessing an individual’s response to stress-inducing situations. In Study 2, the behavioral and endocrine responses to the same tests were compared in the same clouded leopards following three treatments: 1) an anxiety- reducing psychotropic drug (clomipramine, n = 4); 2) a gonadotropin releasing hormone agonist (deslorelin, n = 5), or 3) no treatment (n = 4). In Study 3, the long- term effects of the drug treatments on spermatogenesis and hormone concentrations were compared in clouded leopards (n = 2/treatment) and domestic cats (n = 5/treatment), a model for non-domestic felid reproduction. -
Lion Panthera Leo Big Cats Genus Member Family Felidae Commonly Used Term African Collectively Denotes Several Subspecies Africa
timesthomasvilleaspen brownsvillethetimessakaal vineyardcanberra shreveport indiathe timeschurch beaver cod trenton indiainish timeshereford ohio timesfort timestimes timeslarne timesgloucester usesthe timesmarineshetland timesfiji seattle indianathe ceylonthetimeslyttleton timesnavy tigard timeskansas bryan pamplin painting timesburlington timeskuwait louisianathe rhode tonewspapersthe timescarroll maltatheroanoke timesanglingtimesquadcitykenton southland timesyemen hogarth paso gadsden timeskhaleej groupthe timeskenya disambiguationthe islandthe timesmountain upstate timesvientiane timesnavajo timesmanchester yorkthe pooley romanthe timesrichmond ss timestyronetimesgippsland contextually timesarmytimesinternational oxford huntsville went little timessaigon jerseythe conglomeratestimestamil timesarab timesnorth timespakistan oban timesbrisbanetimescolonial disambiguation timestehran timesstarsome oregon petersburg moscow dorado timeshindustansantiago bandthe timescolerainetimescontra louisville costa twickenham timesnortheast morgan tualatin published queensland publicationsthe timesliberty timesnepali hill malibu timescroatian timesantrim surinametiranatitled marthas manila timeslos montevideo gettysburg informally timesnorthernpublicationschicago timeswaikatojordan budapest timesnavbharat baltic cullman hartford timeschina tolucan timestaipei timesaltus brampton israelthe floydtimesbeaverton tacoma pawtucket africathe timesgainesville timeseltimeswindyenglishlanguagetimesbrunei gympietimesportadown newspapers timeshavanatimeswiltshire -
PRESS RELEASE Available for Immediate Release
PRESS RELEASE Available for Immediate Release For more information or photos, please contact: Courtney Dunn, M.S. Director of The Prusten Project [email protected] http://www.theprustenproject.org http://www.facebook.com/theprustenproject Heard but not seen: Acoustic monitoring as a potential tool for conserving wild tiger populations Imagine being able to track and identify tigers without ever stepping into the forest. Such a far off dream is becoming a quick reality thanks to the work of The Prusten Project. From analyzing the social vocal communications of tigers, The Prusten Project was able to find individual tigers do have unique voices, much like humans, which provide the identity of the caller as well as the caller’s sex. Though the recording equipment may simply look like green boxes, those bland boxes are actually powerful automated recording units (ARUS) created by the company Wildlife Acoustics. The ARUs are able to automatically record tigers based on a schedule programmed prior to deployment and can sit at study site for weeks at a time. Once recording is finished, the memory cards are offloaded into cloud storage where they are able to be search for vocalizations using a sound analysis software, Raven Pro. This work has been supported by the Association of Zoos and Aquariums Tiger Species Survival Plan as well as made possible by the research contributions from AZA facilities which house tigers. Although the first portion of the study was only conducted with the Bengal subspecies, the project is currently looking to record Malayan, Sumatran, and Amur individuals. Determining that tigers do have unique vocalizations is leading to new methods of remote monitoring which would allow a more efficient as well as minimally disruptive census of critical populations where dense jungle prohibits visual confirmation. -
Onomatopoeia in Spoken and Written English : Corpus- and Usage-Based Analysis
Title Onomatopoeia in Spoken and Written English : Corpus- and Usage-based Analysis Author(s) Sugahara, Takashi Citation 北海道大学. 博士(文学) 甲第9777号 Issue Date 2011-03-24 DOI 10.14943/doctoral.k9777 Doc URL http://hdl.handle.net/2115/45138 Type theses (doctoral) File Information Dissertation by Takashi SUGAHARA.pdf Instructions for use Hokkaido University Collection of Scholarly and Academic Papers : HUSCAP Onomatopoeia in Spoken and Written English: Corpus- and Usage-based Analysis (英語の話し言葉・書き言葉におけるオノマトペ:コーパスと用法に基づく分析) A Dissertation Presented to The Graduate School of Letters Hokkaido University In Partial Satisfaction Of the Requirements for the Degree of Doctor of Philosophy In Linguistics by Takashi SUGAHARA 2010 TABLE OF CONTENTS List of Figures......................................................................................................................iv List of Tables........................................................................................................................iv Acknowledgements...............................................................................................................v 1. Introduction......................................................................................................................1 1. 1 Aims and Scope….………………………….………………………,………………………..1 1. 2 Method and Data...………………………………………………….………………………...3 1. 3 The Structure of the Dissertation……………………………………………………..…....9 1. 4 Main Findings................................................................................................................9 -
Understanding Vocal Patterns in Tigers, Panthera Tigris, and Application to the Census and Conservation of Endangered and Threatened Species
Understanding Vocal Patterns in Tigers, Panthera tigris, and Application to the Census and Conservation of Endangered and Threatened Species Courtney Elizabeth Dunn, MS Candidate Department of Biology University of Central Arkansas Conway, Arkansas Introduction Vocalization Collection and Analysis Majestic, powerful, awe-inspiring, and critically endangered – all of these characteristics describe the remaining Recordings for this analysis will be collected at the National Tiger Sanctuary (Saddlebrooke, MO) and Big Cat subspecies of tiger (Panthera tigris) left in the wild. In Rescue (Tampa, FL) over a span of nine months from 28 tigers. recent decades tiger populations have plummeted by over 50% throughout their shrunken-down ranges which From March to December 2013, P. tigris subjects will be observed and recorded at both NTS and BCR. currently only occupy 7% of their historic lands Recording sessions will occur at dawn and dusk as well as overnight using the Songmeter SM2 Platform in 16- (IUCN)(Figure 1) (Seidensticker et al. 1999). Not only is the bit full-spectrum uncompressed .WAV format (Wildlife Acoustics, Concord, MA, USA). One subject will be the rapid disappearance of this keystone species creating an focus of a recording session. Targeted vocalizations include prusten (a.k.a chuffing), subroars , and long- immeasurable impact on the ecosystems they support but it distance calls which range from close-contact vocalization to communication over many miles. is also leaving behind many unanswered questions about their biology. One such area is their communication Raven Pro (version 1.4, Cornell University, USA) spectrogram outputs will be utilized to determine systems. characteristics of interest after a vocal category has been determined Characteristics which will be extracted are illustrated in the below figure (Figure 4)(Wilden, et al. -
Effects of Natural Environmental Conditions on Faecal Glucocorticoid Metabolite Concentrations in Jaguars (Panthera Onca) in Belize
Volume 2 • 2014 10.1093/conphys/cou039 Toolbox Themed Issue Article: Stress in Vertebrates Effects of natural environmental conditions on faecal glucocorticoid metabolite concentrations in jaguars (Panthera onca) in Belize J. Bernardo Mesa-Cruz1,2*, Janine L. Brown2 and Marcella J. Kelly1 1Department of Fish and Wildlife Conservation, Virginia Polytechnic and State University, Cheatham Hall, 310 West Campus Drive, Blacksburg, VA 24061, USA 2Center for Species Survival, Smithsonian Conservation Biology Institute, 1500 Remount Road, Front Royal, VA 22630, USA *Corresponding author: Department of Fish and Wildlife Conservation, Virginia Polytechnic and State University, Cheatham Hall, 310 West Campus Drive, Blacksburg, VA 24061, USA. Tel: +1 443 745 9544. Email: [email protected] In situ studies that rely on non-invasive faecal hormone monitoring are subject to problems due to potential changes in hor- mone concentrations in samples exposed to field conditions. In this study, we conducted an environmental validation for measurement of faecal glucocorticoid metabolites (FGMs) in jaguars (Panthera onca). We collected fresh faeces (e.g. no older than 8 h) from jaguars (six males and four females), housed at the Belize Zoo, and exposed them randomly to two environmen- tal conditions: shade and sun. A control (first sub-sample) was immediately frozen, after which sub-samples were frozen daily over a 5 day period in both the dry and wet seasons. We quantified FGMs using a cortisol enzyme immunoassay (EIA) and a corticosterone radioimmunoassay (RIA), both capable of identifying relevant metabolites. Results indicated that FGMs assessed with the cortisol EIA were stable for 5 days during the dry season but for <1 day during the wet season, while FGMs assessed with the corticosterone RIA were stable for 5 days during both the dry and wet seasons. -
Scientific Crowdsourcing in Wildlife Research and Conservation: Tigers (Panthera Tigris) As a Case Study
COMMUNITY PAGE Scientific crowdsourcing in wildlife research and conservation: Tigers (Panthera tigris) as a case study OÈ zguÈn Emre Can1*, Neil D'Cruze2, Margaret Balaskas2¤, David W. Macdonald1 1 Wildlife Conservation Research Unit, Department of Zoology, University of Oxford, Oxford, United Kingdom, 2 World Animal Protection, London, United Kingdom ¤ Current address: BirdLife International, Cambridge, United Kingdom * [email protected] a1111111111 Abstract a1111111111 a1111111111 With around 3,200 tigers (Panthera tigris) left in the wild, the governments of 13 tiger range a1111111111 countries recently declared that there is a need for innovation to aid tiger research and con- a1111111111 servation. In response to this call, we created the ªThink for Tigersº study to explore whether crowdsourcing has the potential to innovate the way researchers and practitioners monitor tigers in the wild. The study demonstrated that the benefits of crowdsourcing are not restricted only to harnessing the time, labor, and funds from the public but can also be used OPEN ACCESS as a tool to harness creative thinking that can contribute to development of new research Citation: Can OÈE, D'Cruze N, Balaskas M, tools and approaches. Based on our experience, we make practical recommendations for Macdonald DW (2017) Scientific crowdsourcing in designing a crowdsourcing initiative as a tool for generating ideas. wildlife research and conservation: Tigers (Panthera tigris) as a case study. PLoS Biol 15(3): e2001001. https://doi.org/10.1371/journal. pbio.2001001 Published: March 22, 2017 Introduction Copyright: © 2017 Can et al. This is an open access article distributed under the terms of the Creative The United Nations recently declared that despite the ongoing efforts in conservation, Commons Attribution License, which permits threats to biodiversity will continue to increase and the status of biodiversity will continue unrestricted use, distribution, and reproduction in to decline [1]. -
Neofelis Nebulosa) in A
PAIRING CLOUDED LEOPARDS (NEOFELIS NEBULOSA) IN A CAPTIVE BREEDING PROGRAM By KATHERINE MARGARET MACKINNON A thesis submitted in partial fulfillment of the requirements for the degree of MASTER OF SCIENCE IN ANIMAL SCIENCES WASHINGTON STATE UNIVERSITY Department of Animal Sciences MAY 2008 To the Faculty of Washington State University: The members of the Committee appointed to examine the thesis of KATHERINE MARGARET MACKINNON find it satisfactory and recommend that it be accepted. ___________________________________ Chair ___________________________________ ___________________________________ ___________________________________ ii ACKNOWLEDGEMENTS After many tears, smells, laughter, stress, much time, and a bit of heartache I am completing this project with great appreciation for the opportunity and the many people who helped guide and support me through it. Multiple individuals, both in Thailand and the U.S., were involved in this project, and it would not have been completed without their assistance and contributions. First, I’ll express intense gratitude for the guidance and support by my advisors, Ruth Newberry, Ph.D. and Katey Pelican, D.V.M., Ph.D. They are outstanding mentors, providing a blend of leadership and friendship that is priceless and eternally appreciated. Ruth’s attention to maintaining the scientific integrity of the research and analysis has been an invaluable usher for this thesis. Katey’s indispensable understanding of the challenges involved with wildlife research kept me grounded in the understanding that results can be revealing and still very beneficial in this field of study, even if they are not statistically significant. They both lead by tremendous example with quiet encouragement and steadfast dedication. I’d also like to thank Dr. -
NATIONAL STUDBOOK Snow Leopard (Panthera Uncia) II Edition
NATIONAL STUDBOOK NATIONAL STUDBOOK SNOW LEOPARD (Pan thera uncia) II Edition Published as a part of the Central Zoo Authority sponsored project titled “Development and Maintenance of Studbooks for Selected Endangered Species in Indian Zoos” Data: Till December 2014 Published: February 2015 NATIONAL STUDBOOK Snow leopard (Panthera uncia) II Edition Published as a part of the Central Zoo Authority sponsored project titled “Development and Maintenance of Studbooks for Selected Endangered Species in Indian Zoos” Compiled and Analyzed by Ms. Nilofer Begum Junior Research Fellow Project Consultant Dr. Anupam Srivastav, Ph.D. Supervisors Dr. Parag Nigam Shri. P.C. Tyagi IFS Copyright © WII, Dehradun, and CZA, New Delhi, 2015 This report may be quoted freely but the source must be acknowledged and cited as: Wildlife Institute of India (2015). National Studbook of Snow leopard (Panthera uncia), Wildlife Institute of India, Dehradun and Central Zoo Authority, New Delhi. TR. No. -2015/ 002 pages 67 For correspondence: Principal Investigator, Studbook Project, Wildlife Institute of India, PO Box 18, Dehradun, 248001 Uttarakhand, India FOREWORD For species threatened with extinction in their natural habitats ex-situ conservation offers an opportunity for ensuring their long-term survival. Maintaining genetically viable and demographically stable populations in captivity can ensure their sustained survival. This can be ensured by using pedigree information contained in studbooks that form the key to understanding the demographic and genetic structure of populations and taking corrective actions as required for effective management of captive populations. Studbooks also provide an insight into the mating choices that can be exercised to maximize retention of genetic diversity.