Adaptation, History, and Contingency in Ungulate Mandibles
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Molecular and Functional Evolution of Hemoglobin in Perissodactyl
Molecular and functional evolution of hemoglobin in perissodactyl mammals (equids, tapirs, and rhinos) by Margaret Clapin A thesis submitted to the Faculty of Graduate Studies of the University of Manitoba in partial fulfillment of the requirements for the degree of Master of Science Department of Biological Sciences University of Manitoba Winnipeg, Manitoba Canada © 2019 Abstract: In this thesis, the oxygen binding characteristics of recombinant hemoglobin (Hb) isoforms (HbA [α2β2] and HbA2 [α2δ2]) from the extinct woolly rhinoceros (Coelodonta antiquitatis) are compared with Sumatran rhino (Dicerorhinus sumatrensis) and black rhino (Diceros bicornis) Hb. The major Hb component (HbA) of horses (Equus caballus) was also examined, as its blood O2 affinity has a low thermal sensitivity. This trait is commonly associated with cold-adaptation as it permits O2 to be offloaded at the cool peripheral tissues of regionally endothermic mammals, though the mechanism(s) by which the oxygenation enthalpy is reduced in horse Hb is unknown. It was hypothesized that the woolly rhino Hb isoforms would have similarly low thermal sensitivities to that of horses, either through enhanced effector binding or by altering the energetic transition from the tense to the relaxed state of hemoglobin. To test this hypothesis the hemoglobin coding sequences for each of the above species were determined and their Hb isoforms expressed using E. coli and purified. Oxygen equilibrium curves were then determined in the presence and absence of allosteric effectors at 25 and 37°C. Horse HbA had a low sensitivity to 2,3- diphosphoglycerate (DPG), though its low temperature sensitivity was primarily driven by increased DPG binding at the lower test temperature. -
Stopover Ecology of a Migratory Ungulate
Journal of Animal Ecology 2011, 80, 1078–1087 doi: 10.1111/j.1365-2656.2011.01845.x Stopover ecology of a migratory ungulate Hall Sawyer1,2* and Matthew J. Kauffman3 1Department of Zoology and Physiology, Wyoming Cooperative Fish and Wildlife Research Unit, University of Wyoming, Laramie, WY 82071, USA; 2Western Ecosystems Technology, Inc., 200 South 2nd St., Laramie, WY 82070, USA; and 3Department of Zoology and Physiology, United States Geological Survey, Wyoming Cooperative Fish and Wildlife Research Unit, University of Wyoming, Laramie, WY, USA Summary 1. Birds that migrate long distances use stopover sites to optimize fuel loads and complete migra- tion as quickly as possible. Stopover use has been predicted to facilitate a time-minimization strat- egy in land migrants as well, but empirical tests have been lacking, and alternative migration strategies have not been considered. 2. We used fine-scale movement data to evaluate the ecological role of stopovers in migratory mule deer Odocoileus hemionus – a land migrant whose fitness is strongly influenced by energy intake rather than migration speed. 3. Although deer could easily complete migrations (range 18–144 km) in several days, they took an average of 3 weeks and spent 95% of that time in a series of stopover sites that had higher for- age quality than movement corridors. Forage quality of stopovers increased with elevation and distance from winter range. Mule deer use of stopovers corresponded with a narrow phenological range, such that deer occupied stopovers 44 days prior to peak green-up, when forage quality was presumed to be highest. Mule deer used one stopover for every 5Æ3 and 6Æ7 km travelled during spring and autumn migrations, respectively, and used the same stopovers in consecutive years. -
Boselaphus Tragocamelus</I>
University of Nebraska - Lincoln DigitalCommons@University of Nebraska - Lincoln USGS Staff -- Published Research US Geological Survey 2008 Boselaphus tragocamelus (Artiodactyla: Bovidae) David M. Leslie Jr. U.S. Geological Survey, [email protected] Follow this and additional works at: https://digitalcommons.unl.edu/usgsstaffpub Leslie, David M. Jr., "Boselaphus tragocamelus (Artiodactyla: Bovidae)" (2008). USGS Staff -- Published Research. 723. https://digitalcommons.unl.edu/usgsstaffpub/723 This Article is brought to you for free and open access by the US Geological Survey at DigitalCommons@University of Nebraska - Lincoln. It has been accepted for inclusion in USGS Staff -- Published Research by an authorized administrator of DigitalCommons@University of Nebraska - Lincoln. MAMMALIAN SPECIES 813:1–16 Boselaphus tragocamelus (Artiodactyla: Bovidae) DAVID M. LESLIE,JR. United States Geological Survey, Oklahoma Cooperative Fish and Wildlife Research Unit and Department of Natural Resource Ecology and Management, Oklahoma State University, Stillwater, OK 74078-3051, USA; [email protected] Abstract: Boselaphus tragocamelus (Pallas, 1766) is a bovid commonly called the nilgai or blue bull and is Asia’s largest antelope. A sexually dimorphic ungulate of large stature and unique coloration, it is the only species in the genus Boselaphus. It is endemic to peninsular India and small parts of Pakistan and Nepal, has been extirpated from Bangladesh, and has been introduced in the United States (Texas), Mexico, South Africa, and Italy. It prefers open grassland and savannas and locally is a significant agricultural pest in India. It is not of special conservation concern and is well represented in zoos and private collections throughout the world. DOI: 10.1644/813.1. -
Division of Law Enforcement
U.S. Fish & Wildlife Service Division of Law Enforcement Annual Report FY 2000 The U.S. Fish and Wildlife Service, working with others, conserves, protects, and enhances fish and wildlife and their habitats for the continuing benefit of the American people. As part of this mission, the Service is responsible for enforcing U.S. and international laws, regulations, and treaties that protect wildlife resources. Cover photo by J & K Hollingsworth/USFWS I. Overview ..................................................................................................................1 Program Evolution and Priorities......................................................................2 Major Program Components ..............................................................................2 FY 2000 Investigations Statistical Summary (chart) ....................................3 FY 1999-2000 Wildlife Inspection Activity (chart) ..........................................6 Table of Laws Enforced ......................................................................................................7 Contents II. Organizational Structure ........................................................................................9 III. Regional Highlights ..............................................................................................14 Region One ..........................................................................................................14 Region Two ..........................................................................................................26 -
Evolution and Extinction of the Giant Rhinoceros Elasmotherium Sibiricum Sheds Light on Late Quaternary Megafaunal Extinctions
ARTICLES https://doi.org/10.1038/s41559-018-0722-0 Evolution and extinction of the giant rhinoceros Elasmotherium sibiricum sheds light on late Quaternary megafaunal extinctions Pavel Kosintsev1, Kieren J. Mitchell2, Thibaut Devièse3, Johannes van der Plicht4,5, Margot Kuitems4,5, Ekaterina Petrova6, Alexei Tikhonov6, Thomas Higham3, Daniel Comeskey3, Chris Turney7,8, Alan Cooper 2, Thijs van Kolfschoten5, Anthony J. Stuart9 and Adrian M. Lister 10* Understanding extinction events requires an unbiased record of the chronology and ecology of victims and survivors. The rhi- noceros Elasmotherium sibiricum, known as the ‘Siberian unicorn’, was believed to have gone extinct around 200,000 years ago—well before the late Quaternary megafaunal extinction event. However, no absolute dating, genetic analysis or quantita- tive ecological assessment of this species has been undertaken. Here, we show, by accelerator mass spectrometry radiocarbon dating of 23 individuals, including cross-validation by compound-specific analysis, that E. sibiricum survived in Eastern Europe and Central Asia until at least 39,000 years ago, corroborating a wave of megafaunal turnover before the Last Glacial Maximum in Eurasia, in addition to the better-known late-glacial event. Stable isotope data indicate a dry steppe niche for E. sibiricum and, together with morphology, a highly specialized diet that probably contributed to its extinction. We further demonstrate, with DNA sequencing data, a very deep phylogenetic split between the subfamilies Elasmotheriinae and Rhinocerotinae that includes all the living rhinoceroses, settling a debate based on fossil evidence and confirming that the two lineages had diverged by the Eocene. As the last surviving member of the Elasmotheriinae, the demise of the ‘Siberian unicorn’ marked the extinction of this subfamily. -
Ancient Metaproteomics: a Novel Approach for Understanding Disease And
Ancient metaproteomics: a novel approach for understanding disease and diet in the archaeological record Jessica Hendy PhD University of York Archaeology August, 2015 ii Abstract Proteomics is increasingly being applied to archaeological samples following technological developments in mass spectrometry. This thesis explores how these developments may contribute to the characterisation of disease and diet in the archaeological record. This thesis has a three-fold aim; a) to evaluate the potential of shotgun proteomics as a method for characterising ancient disease, b) to develop the metaproteomic analysis of dental calculus as a tool for understanding both ancient oral health and patterns of individual food consumption and c) to apply these methodological developments to understanding individual lifeways of people enslaved during the 19th century transatlantic slave trade. This thesis demonstrates that ancient metaproteomics can be a powerful tool for identifying microorganisms in the archaeological record, characterising the functional profile of ancient proteomes and accessing individual patterns of food consumption with high taxonomic specificity. In particular, analysis of dental calculus may be an extremely valuable tool for understanding the aetiology of past oral diseases. Results of this study highlight the value of revisiting previous studies with more recent methodological approaches and demonstrate that biomolecular preservation can have a significant impact on the effectiveness of ancient proteins as an archaeological tool for this characterisation. Using the approaches developed in this study we have the opportunity to increase the visibility of past diseases and their aetiology, as well as develop a richer understanding of individual lifeways through the production of molecular life histories. iii iv List of Contents Abstract ............................................................................................................................... -
Short Title: Ecological Properties of Ruminal Microbiota
Preprints (www.preprints.org) | NOT PEER-REVIEWED | Posted: 24 December 2020 doi:10.20944/preprints202012.0628.v1 CHARACTERISTICS OF RUMINAL MICROBIAL COMMUNITY: EVOLUTIONARY AND ECOLOGICAL PERSPECTIVES AMLAN KUMAR PATRA* Department of Animal Nutrition, West Bengal University of Animal and Fishery Sciences, Belgachia, K.B. Sarani 37, Kolkata 700037, India *Corresponding author. Email address: [email protected] (A.K. Patra) Short title: Ecological properties of ruminal microbiota 0 © 2020 by the author(s). Distributed under a Creative Commons CC BY license. Preprints (www.preprints.org) | NOT PEER-REVIEWED | Posted: 24 December 2020 doi:10.20944/preprints202012.0628.v1 CHARACTERISTICS OF RUMINAL MICROBIAL COMMUNITY: EVOLUTIONARY AND ECOLOGICAL PERSPECTIVES Abstract Ruminants perhaps appeared about 50 million years ago (Ma). Five ruminant families had been extinct and about 200 species in 6 ruminant families are living today. The first ruminant family probably was small omnivore without functional ruminal microbiota to digest fiber. Subsequently, other ruminant families evolved around 18-23 Ma along with woodlands and grasslands. Probably, ruminants started to consume selective and highly nutritious plant leaves and grasses similar to concentrates. By 5-11 Ma, grasslands expanded and some ruminants used more grass in their diets with comparatively low nutritive values and high fibers. Historically, humans have domesticated 9 ruminant species that are mostly utilizer of low quality forages for human benefits. Thus, the non-functional rumen microbiota to predominantly concentrate fermenting microbiota, followed by predominantly fiber digesting microbiota had evolved for mutual complementary benefits of holobiont over the million years. The core microbiome of ruminant species seems the resultant of hologenome interaction in an evolutionary unit. -
Timeline of the Evolutionary History of Life
Timeline of the evolutionary history of life This timeline of the evolutionary history of life represents the current scientific theory Life timeline Ice Ages outlining the major events during the 0 — Primates Quater nary Flowers ←Earliest apes development of life on planet Earth. In P Birds h Mammals – Plants Dinosaurs biology, evolution is any change across Karo o a n ← Andean Tetrapoda successive generations in the heritable -50 0 — e Arthropods Molluscs r ←Cambrian explosion characteristics of biological populations. o ← Cryoge nian Ediacara biota – z ← Evolutionary processes give rise to diversity o Earliest animals ←Earliest plants at every level of biological organization, i Multicellular -1000 — c from kingdoms to species, and individual life ←Sexual reproduction organisms and molecules, such as DNA and – P proteins. The similarities between all present r -1500 — o day organisms indicate the presence of a t – e common ancestor from which all known r Eukaryotes o species, living and extinct, have diverged -2000 — z o through the process of evolution. More than i Huron ian – c 99 percent of all species, amounting to over ←Oxygen crisis [1] five billion species, that ever lived on -2500 — ←Atmospheric oxygen Earth are estimated to be extinct.[2][3] Estimates on the number of Earth's current – Photosynthesis Pong ola species range from 10 million to 14 -3000 — A million,[4] of which about 1.2 million have r c been documented and over 86 percent have – h [5] e not yet been described. However, a May a -3500 — n ←Earliest oxygen 2016 -
Anaplasma Phagocytophilum in the Highly Endangered Père David's
Yang et al. Parasites & Vectors (2018) 11:25 DOI 10.1186/s13071-017-2599-1 LETTER TO THE EDITOR Open Access Anaplasma phagocytophilum in the highly endangered Père David’s deer Elaphurus davidianus Yi Yang1,3, Zhangping Yang2,3*, Patrick Kelly4, Jing Li1, Yijun Ren5 and Chengming Wang1,6* Abstract Eighteen of 43 (41.8%) Père David’s deer from Dafeng Elk National Natural Reserve, China, were positive for Anaplasma phagocytophilum based on real-time FRET-PCR and species-specific PCRs targeting the 16S rRNA or msp4. To our knowledge this is the first report of A. phagocytophilum in this endangered animal. Keywords: Anaplasma phagocytophilum, Père David’s deer, Elaphurus davidianus, China Letter to the Editor GmbH, Mannheim, Germany). The fluorescence reson- Père David’s deer (Elaphurus davidianus) are now found ance energy transfer (FRET) quantitative PCR targeting only in captivity although they occurred widely in north- the 16S rRNA gene of Anaplasma spp. [5] gave positive eastern and east-central China until they became extinct reactions for 18 deer (41.8%), including 8 females in the wild in the late nineteenth century [1]. In the (34.8%) and 10 males (50.0%). To investigate the species 1980s, 77 Père David’s deer were reintroduced back into of Anaplasma present, the positive samples were further China from Europe. Currently the estimated total popu- analyzed with species-specific primers targeting the 16S lation of Père David’s deer in the world is approximately rRNA gene of A. centrale, A. bovis, A. phagocytophilum 5000 animals, the majority living in England and China. -
Project Report 2010-2011
FOOD HABITS AND OVERLAPS BETWEEN LIVESTOCK AND MONGOLIAN SAIGA PROJECT REPORT 2010-2011 Bayarbaatar Buuveibaatar Gundensambuu Gunbat Correspondence: Buuveibaatar Bayarbaatar. PhD Student, Department of Environmental Conservation, University of Massachusetts, Amherst 01003, USA [email protected] & Wildlife Conservation Society, Mongolia Program, “Internom” Bookstore 3rd Floor, Ulaanbaatar 211238, Mongolia Abstract The Mongolian saiga (Saiga tatarica mongolica) is listed as a critically endangered antelope in IUCN Red list and their conservation is urgently needed. Recent increases in livestock numbers have potentially reduced the capacity of habitats to sustain saiga because of forage or interference competition. We studied the potential for forage competition between saiga and domestic livestock in Shargyn Gobi, western Mongolia by quantifying diet overlaps using microscopic analysis of fecal samples. We collected 10 fecal samples from each of saiga, goat, sheep, horse, and camels in summer of 2011. We also established 105 plots at sightings of marked saiga antelope in June 2011 to determine vegetation community within saiga range. Each plot was subdivided into 5 adjacent 1 m2 square quadrats and the plants in them were surveyed. Onions or Allium appeared greater proportions in the diet composition of saiga, goat, and sheep. Diet composition of camels consisted mainly from shrubs, whereas Stipa was the dominantly found in the diet of horses. Among twenty-five plant species were recorded in the vegetation plots, Allium sp was the most frequently occurred species. The food habits of Mongolian saiga were quite similar to those of sheep and goats but were different from those of horses and camels. Our results suggest the saiga and sheep/goats would potentially be competitive on pasture as were suggested in similar study on Mongolian gazelle and argali sheep in Mongolia. -
Migration: on the Move in Alaska
National Park Service U.S. Department of the Interior Alaska Park Science Alaska Region Migration: On the Move in Alaska Volume 17, Issue 1 Alaska Park Science Volume 17, Issue 1 June 2018 Editorial Board: Leigh Welling Jim Lawler Jason J. Taylor Jennifer Pederson Weinberger Guest Editor: Laura Phillips Managing Editor: Nina Chambers Contributing Editor: Stacia Backensto Design: Nina Chambers Contact Alaska Park Science at: [email protected] Alaska Park Science is the semi-annual science journal of the National Park Service Alaska Region. Each issue highlights research and scholarship important to the stewardship of Alaska’s parks. Publication in Alaska Park Science does not signify that the contents reflect the views or policies of the National Park Service, nor does mention of trade names or commercial products constitute National Park Service endorsement or recommendation. Alaska Park Science is found online at: www.nps.gov/subjects/alaskaparkscience/index.htm Table of Contents Migration: On the Move in Alaska ...............1 Future Challenges for Salmon and the Statewide Movements of Non-territorial Freshwater Ecosystems of Southeast Alaska Golden Eagles in Alaska During the A Survey of Human Migration in Alaska's .......................................................................41 Breeding Season: Information for National Parks through Time .......................5 Developing Effective Conservation Plans ..65 History, Purpose, and Status of Caribou Duck-billed Dinosaurs (Hadrosauridae), Movements in Northwest -
Towards Snow Leopard Prey Recovery: Understanding the Resource Use Strategies and Demographic Responses of Bharal Pseudois Nayaur to Livestock Grazing and Removal
Towards snow leopard prey recovery: understanding the resource use strategies and demographic responses of bharal Pseudois nayaur to livestock grazing and removal Final project report submitted by Kulbhushansingh Suryawanshi Nature Conservation Foundation, Mysore Post-graduate Program in Wildlife Biology and Conservation, National Centre for Biological Sciences, Wildlife Conservation Society –India program, Bangalore, India To Snow Leopard Conservation Grant Program January 2009 Towards snow leopard prey recovery: understanding the resource use strategies and demographic responses of bharal Pseudois nayaur to livestock grazing and removal. 1. Executive Summary: Decline of wild prey populations in the Himalayan region, largely due to competition with livestock, has been identified as one of the main threats to the snow leopard Uncia uncia. Studies show that bharal Pseudois nayaur diet is dominated by graminoids during summer, but the proportion of graminoids declines in winter. We explore the causes for the decline of graminoids from bharal winter diet and resulting implications for bharal conservation. We test the predictions generated by two alternative hypotheses, (H1) low graminoid availability caused by livestock grazing during winter causes bharal to include browse in their diet, and, (H2) bharal include browse, with relatively higher nutrition, to compensate for the poor quality of graminoids during winter. Graminoid availability was highest in areas without livestock grazing, followed by areas with moderate and intense livestock grazing. Graminoid quality in winter was relatively lower than that of browse, but the difference was not statistically significant. Bharal diet was dominated by graminoids in areas with highest graminoid availability. Graminoid contribution to bharal diet declined monotonically with a decline in graminoid availability.