Package 'Taxize'
Total Page:16
File Type:pdf, Size:1020Kb
Package ‘taxize’ June 13, 2015 Title Taxonomic Information from Around the Web Description Taxonomic information from around the web. This package interacts with a suite of web 'APIs' for taxonomic tasks, such as verifying species names, getting taxonomic hierarchies, and verifying name spelling. Version 0.6.0 License MIT + file LICENSE URL https://github.com/ropensci/taxize BugReports https://github.com/ropensci/taxize/issues LazyLoad yes LazyData yes VignetteBuilder knitr Depends R(>= 2.10.0) Imports XML (>= 3.98.1.1), RCurl (>= 1.6), reshape2, stringr, plyr, httr (>= 0.6.1), jsonlite, foreach, ape, Taxonstand, data.table, bold Suggests testthat, roxygen2, knitr, vegan NeedsCompilation no Author Scott Chamberlain [aut, cre], Eduard Szoecs [aut], Zachary Foster [aut], Carl Boettiger [aut], Karthik Ram [aut], Ignasi Bartomeus [aut], John Baumgartner [aut] Maintainer Scott Chamberlain <[email protected]> Repository CRAN Date/Publication 2015-06-13 19:00:34 1 2 R topics documented: R topics documented: taxize-package . .4 apg..............................................5 apg_families . .6 apg_lookup . .6 apg_orders . .7 bold_search . .8 children . .9 class2tree . 11 classification . 13 col_children . 16 col_downstream . 18 col_search . 19 comm2sci . 20 downstream . 22 eol_dataobjects . 24 eol_pages . 25 eol_search . 26 gbif_name_usage . 27 gbif_parse . 28 genbank2uid . 29 get_boldid . 30 get_colid . 33 get_eolid . 36 get_gbifid . 38 get_ids . 41 get_nbnid . 43 get_tpsid . 45 get_tsn . 49 get_ubioid . 51 get_uid . 54 gni_details . 57 gni_parse . 58 gni_search . 59 gnr_datasources . 60 gnr_resolve . 61 iplant_resolve . 63 ipni_search . 64 itis-api . 66 itis_acceptname . 67 itis_downstream . 68 itis_getrecord . 69 itis_hierarchy . 70 itis_kingdomnames . 71 itis_lsid . 72 itis_name . 72 itis_native . 73 R topics documented: 3 itis_refs . 74 itis_searchcommon . 74 itis_taxrank . 75 itis_terms . 76 iucn_getname . 77 iucn_status . 77 iucn_summary . 78 names_list . 79 nbn_classification . 80 nbn_search . 81 nbn_synonyms . 82 ncbi_children . 82 ncbi_get_taxon_summary . 84 phylomatic_format . 85 phylomatic_tree . 85 ping............................................. 87 plantGenusNames . 89 plantminer . 89 plantNames . 90 rankagg . 91 rank_ref . 91 resolve . 92 sci2comm . 93 scrapenames . 94 status_codes . 96 synonyms . 96 taxize-defunct . 98 taxize-deprecated . 99 taxize_capwords . 99 taxize_cite . 100 tax_agg . 100 tax_name . 102 tax_rank . 103 theplantlist . 104 tnrs ............................................. 105 tnrs_sources . 106 tpl_families . 107 tpl_get . ..