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A Phylogenetic Framework for Evolutionary Study of the Nightshades
Särkinen et al. BMC Evolutionary Biology 2013, 13:214 http://www.biomedcentral.com/1471-2148/13/214 RESEARCH ARTICLE Open Access A phylogenetic framework for evolutionary study of the nightshades (Solanaceae): a dated 1000-tip tree Tiina Särkinen1,2*, Lynn Bohs3, Richard G Olmstead4 and Sandra Knapp1 Abstract Background: The Solanaceae is a plant family of great economic importance. Despite a wealth of phylogenetic work on individual clades and a deep knowledge of particular cultivated species such as tomato and potato, a robust evolutionary framework with a dated molecular phylogeny for the family is still lacking. Here we investigate molecular divergence times for Solanaceae using a densely-sampled species-level phylogeny. We also review the fossil record of the family to derive robust calibration points, and estimate a chronogram using an uncorrelated relaxed molecular clock. Results: Our densely-sampled phylogeny shows strong support for all previously identified clades of Solanaceae and strongly supported relationships between the major clades, particularly within Solanum. The Tomato clade is shown to be sister to section Petota, and the Regmandra clade is the first branching member of the Potato clade. The minimum age estimates for major splits within the family provided here correspond well with results from previous studies, indicating splits between tomato & potato around 8 Million years ago (Ma) with a 95% highest posterior density (HPD) 7–10 Ma, Solanum & Capsicum c. 19 Ma (95% HPD 17–21), and Solanum & Nicotiana c. 24 Ma (95% HPD 23–26). Conclusions: Our large time-calibrated phylogeny provides a significant step towards completing a fully sampled species-level phylogeny for Solanaceae, and provides age estimates for the whole family. -
Improving the Utilization of Data for Environmental Risk Assessment
STATISTICALECO(-TOXICO)LOGY IMPROVINGTHEUTILISATIONOFDATAFOR ENVIRONMENTALRISKASSESSMENT by eduard szöcs from zarneˇ ¸sti / romania Accepted Dissertation thesis for the partial fulfillment of the requirements for a Doctor of Natural Sciences Fachbereich 7: Natur- und Umweltwissenschaften Universität Koblenz-Landau Thesis examiners: Prof. Dr. Ralf B. Schäfer, University Koblenz-Landau Prof. Dr. Ralf Schulz, University Koblenz-Landau Assoc. Prof. Dr. Christian Ritz, University of Copenhagen Date of the oral examination: 25th January 2017 Galileo Few may hear Galileo’s song (calling) A tribulation Adversities Fuel for a living, feeds us all Spirit is fire Uncompromising Hidden hand, protect us from The dead and dying Echo his madness His heresy feeds us all Spirit is fire Uncompromising Hidden hand, protect us from The dead and dying Few may Spirit is fire Feed on the senseless ending Spirit is fire Feed on the senseless ending - Song by Maynard James Keenan ACKNOWLEDGMENTS I thank all the persons that supported me during my studies and this dissertation. My special thanks to my supervisor Prof. Dr. Ralf B. Schäfer for his support throughout the last six years. I am thankful for his openness to my ideas and the opportunities given to follow them, for organising funding throughout this dissertation, for pushing me to sound scientific writing and critical reading, for challenging discussions, not only on statistical eco(-toxico)logy but also outside of the subject area. Many thanks to Prof. Dr. Ralf Schulz for examining this thesis and his influence on me during my undergrad studies. Moreover, I thank Prof. Dr. Engelbert Niehaus for chairing the dissertation committee. Without the continuous support of my parents, Anca and Helmut, this thesis would not have been possible - Thank you! I am grateful to my colleagues, students and other people for asking me tough statistical questions. -
Outline of Angiosperm Phylogeny
Outline of angiosperm phylogeny: orders, families, and representative genera with emphasis on Oregon native plants Priscilla Spears December 2013 The following listing gives an introduction to the phylogenetic classification of the flowering plants that has emerged in recent decades, and which is based on nucleic acid sequences as well as morphological and developmental data. This listing emphasizes temperate families of the Northern Hemisphere and is meant as an overview with examples of Oregon native plants. It includes many exotic genera that are grown in Oregon as ornamentals plus other plants of interest worldwide. The genera that are Oregon natives are printed in a blue font. Genera that are exotics are shown in black, however genera in blue may also contain non-native species. Names separated by a slash are alternatives or else the nomenclature is in flux. When several genera have the same common name, the names are separated by commas. The order of the family names is from the linear listing of families in the APG III report. For further information, see the references on the last page. Basal Angiosperms (ANITA grade) Amborellales Amborellaceae, sole family, the earliest branch of flowering plants, a shrub native to New Caledonia – Amborella Nymphaeales Hydatellaceae – aquatics from Australasia, previously classified as a grass Cabombaceae (water shield – Brasenia, fanwort – Cabomba) Nymphaeaceae (water lilies – Nymphaea; pond lilies – Nuphar) Austrobaileyales Schisandraceae (wild sarsaparilla, star vine – Schisandra; Japanese -
List of Animal Species with Ranks October 2017
Washington Natural Heritage Program List of Animal Species with Ranks October 2017 The following list of animals known from Washington is complete for resident and transient vertebrates and several groups of invertebrates, including odonates, branchipods, tiger beetles, butterflies, gastropods, freshwater bivalves and bumble bees. Some species from other groups are included, especially where there are conservation concerns. Among these are the Palouse giant earthworm, a few moths and some of our mayflies and grasshoppers. Currently 857 vertebrate and 1,100 invertebrate taxa are included. Conservation status, in the form of range-wide, national and state ranks are assigned to each taxon. Information on species range and distribution, number of individuals, population trends and threats is collected into a ranking form, analyzed, and used to assign ranks. Ranks are updated periodically, as new information is collected. We welcome new information for any species on our list. Common Name Scientific Name Class Global Rank State Rank State Status Federal Status Northwestern Salamander Ambystoma gracile Amphibia G5 S5 Long-toed Salamander Ambystoma macrodactylum Amphibia G5 S5 Tiger Salamander Ambystoma tigrinum Amphibia G5 S3 Ensatina Ensatina eschscholtzii Amphibia G5 S5 Dunn's Salamander Plethodon dunni Amphibia G4 S3 C Larch Mountain Salamander Plethodon larselli Amphibia G3 S3 S Van Dyke's Salamander Plethodon vandykei Amphibia G3 S3 C Western Red-backed Salamander Plethodon vehiculum Amphibia G5 S5 Rough-skinned Newt Taricha granulosa -
Bibliographic Guide to the Terrestrial Arthropods of Michigan
The Great Lakes Entomologist Volume 16 Number 3 - Fall 1983 Number 3 - Fall 1983 Article 5 October 1983 Bibliographic Guide to the Terrestrial Arthropods of Michigan Mark F. O'Brien The University of Michigan Follow this and additional works at: https://scholar.valpo.edu/tgle Part of the Entomology Commons Recommended Citation O'Brien, Mark F. 1983. "Bibliographic Guide to the Terrestrial Arthropods of Michigan," The Great Lakes Entomologist, vol 16 (3) Available at: https://scholar.valpo.edu/tgle/vol16/iss3/5 This Peer-Review Article is brought to you for free and open access by the Department of Biology at ValpoScholar. It has been accepted for inclusion in The Great Lakes Entomologist by an authorized administrator of ValpoScholar. For more information, please contact a ValpoScholar staff member at [email protected]. O'Brien: Bibliographic Guide to the Terrestrial Arthropods of Michigan 1983 THE GREAT LAKES ENTOMOLOGIST 87 BIBLIOGRAPHIC GUIDE TO THE TERRESTRIAL ARTHROPODS OF MICHIGAN Mark F. O'Brienl ABSTRACT Papers dealing with distribution, faunal extensions, and identification of Michigan insects and other terrestrial arthropods are listed by order, and cover the period of 1878 through 1982. The following bibliography lists the publications dealing with the distribution or identification of insects and other terrestrial arthropods occurring in the State of Michigan. Papers dealing only with biological, behavioral, or economic aspects are not included. The entries are grouped by orders, which are arranged alphabetically, rather than phylogenetic ally , to facilitate information retrieval. The intent of this paper is to provide a ready reference to works on the Michigan fauna, although some of the papers cited will be useful for other states in the Great Lakes region. -
Appendix A: Common and Scientific Names for Fish and Wildlife Species Found in Idaho
APPENDIX A: COMMON AND SCIENTIFIC NAMES FOR FISH AND WILDLIFE SPECIES FOUND IN IDAHO. How to Read the Lists. Within these lists, species are listed phylogenetically by class. In cases where phylogeny is incompletely understood, taxonomic units are arranged alphabetically. Listed below are definitions for interpreting NatureServe conservation status ranks (GRanks and SRanks). These ranks reflect an assessment of the condition of the species rangewide (GRank) and statewide (SRank). Rangewide ranks are assigned by NatureServe and statewide ranks are assigned by the Idaho Conservation Data Center. GX or SX Presumed extinct or extirpated: not located despite intensive searches and virtually no likelihood of rediscovery. GH or SH Possibly extinct or extirpated (historical): historically occurred, but may be rediscovered. Its presence may not have been verified in the past 20–40 years. A species could become SH without such a 20–40 year delay if the only known occurrences in the state were destroyed or if it had been extensively and unsuccessfully looked for. The SH rank is reserved for species for which some effort has been made to relocate occurrences, rather than simply using this status for all elements not known from verified extant occurrences. G1 or S1 Critically imperiled: at high risk because of extreme rarity (often 5 or fewer occurrences), rapidly declining numbers, or other factors that make it particularly vulnerable to rangewide extinction or extirpation. G2 or S2 Imperiled: at risk because of restricted range, few populations (often 20 or fewer), rapidly declining numbers, or other factors that make it vulnerable to rangewide extinction or extirpation. G3 or S3 Vulnerable: at moderate risk because of restricted range, relatively few populations (often 80 or fewer), recent and widespread declines, or other factors that make it vulnerable to rangewide extinction or extirpation. -
British Lepidoptera (/)
British Lepidoptera (/) Home (/) Anatomy (/anatomy.html) FAMILIES 1 (/families-1.html) GELECHIOIDEA (/gelechioidea.html) FAMILIES 3 (/families-3.html) FAMILIES 4 (/families-4.html) NOCTUOIDEA (/noctuoidea.html) BLOG (/blog.html) Glossary (/glossary.html) Family: SPHINGIDAE (3SF 13G 18S) Suborder:Glossata Infraorder:Heteroneura Superfamily:Bombycoidea Refs: Waring & Townsend, Wikipedia, MBGBI9 Proboscis short to very long, unscaled. Antenna ~ 1/2 length of forewing; fasciculate or pectinate in male, simple in female; apex pointed. Labial palps long, 3-segmented. Eye large. Ocelli absent. Forewing long, slender. Hindwing ±triangular. Frenulum and retinaculum usually present but may be reduced. Tegulae large, prominent. Leg spurs variable but always present on midtibia. 1st tarsal segment of mid and hindleg about as long as tibia. Subfamily: Smerinthinae (3G 3S) Tribe: Smerinthini Probably characterised by a short proboscis and reduced or absent frenulum Mimas Smerinthus Laothoe 001 Mimas tiliae (Lime Hawkmoth) 002 Smerinthus ocellata (Eyed Hawkmoth) 003 Laothoe populi (Poplar Hawkmoth) (/002- (/001-mimas-tiliae-lime-hawkmoth.html) smerinthus-ocellata-eyed-hawkmoth.html) (/003-laothoe-populi-poplar-hawkmoth.html) Subfamily: Sphinginae (3G 4S) Rest with wings in tectiform position Tribe: Acherontiini Agrius Acherontia 004 Agrius convolvuli 005 Acherontia atropos (Convolvulus Hawkmoth) (Death's-head Hawkmoth) (/005- (/004-agrius-convolvuli-convolvulus- hawkmoth.html) acherontia-atropos-deaths-head-hawkmoth.html) Tribe: Sphingini Sphinx (2S) -
Moths of Ohio Guide
MOTHS OF OHIO field guide DIVISION OF WILDLIFE This booklet is produced by the ODNR Division of Wildlife as a free publication. This booklet is not for resale. Any unauthorized INTRODUCTION reproduction is prohibited. All images within this booklet are copyrighted by the Division of Wildlife and it’s contributing artists and photographers. For additional information, please call 1-800-WILDLIFE. Text by: David J. Horn Ph.D Moths are one of the most diverse and plentiful HOW TO USE THIS GUIDE groups of insects in Ohio, and the world. An es- Scientific Name timated 160,000 species have thus far been cata- Common Name Group and Family Description: Featured Species logued worldwide, and about 13,000 species have Secondary images 1 Primary Image been found in North America north of Mexico. Secondary images 2 Occurrence We do not yet have a clear picture of the total Size: when at rest number of moth species in Ohio, as new species Visual Index Ohio Distribution are still added annually, but the number of species Current Page Description: Habitat & Host Plant is certainly over 3,000. Although not as popular Credit & Copyright as butterflies, moths are far more numerous than their better known kin. There is at least twenty Compared to many groups of animals, our knowledge of moth distribution is very times the number of species of moths in Ohio as incomplete. Many areas of the state have not been thoroughly surveyed and in some there are butterflies. counties hardly any species have been documented. Accordingly, the distribution maps in this booklet have three levels of shading: 1. -
Description and Phylogenetic Analysis of the Calycopidina (Lepidoptera, Lycaenidae, Theclinae, Eumaeini): a Subtribe of Detritivores
Description and phylogenetic analysis of the Calycopidina 45 Description and phylogenetic analysis of the Calycopidina (Lepidoptera, Lycaenidae, Theclinae, Eumaeini): a subtribe of detritivores Marcelo Duarte1 & Robert K. Robbins2 1Museu de Zoologia, Universidade de São Paulo, Avenida Nazaré 481, Ipiranga, 04263–000 São Paulo, SP, Brazil. [email protected] 2National Museum of Natural History, Smithsonian Institution, P. O. Box 37012, NHB Stop 105, Washington, DC 20013–7012 USA. [email protected] ABSTRACT. Description and phylogenetic analysis of the Calycopidina (Lepidoptera, Lycaenidae, Theclinae, Eumaeini): a subtribe of detritivores. The purpose of this paper is to establish a phylogenetic basis for a new Eumaeini subtribe that includes those lycaenid genera in which detritivory has been recorded. Morphological characters were coded for 82 species of the previously proposed “Lamprospilus Section” of the Eumaeini (19 of these had coding identical to another species), and a phylogenetic analysis was performed using the 63 distinct ingroup terminal taxa and six outgroups belonging to four genera. Taxonomic results include the description in the Eumaeini of Calycopidina Duarte & Robbins new subtribe (type genus Calycopis Scudder, 1876), which contains Lamprospilus Geyer, Badecla Duarte & Robbins new genus (type species Thecla badaca Hewitson), Arzecla Duarte & Robbins new genus (type species Thecla arza Hewitson), Arumecla Robbins & Duarte, Camissecla Robbins & Duarte, Electrostrymon Clench, Rubroserrata K. Johnson & Kroenlein revalidated status, Ziegleria K. Johnson, Kisutam K. Johnson & Kroenlein revalidated status, and Calycopis. Previous “infratribe” names Angulopina K. Johnson & Kroenlein, 1993, and Calycopina K. Johnson & Kroenlein, 1993, are nomenclaturally unavailable and polyphyletic as proposed. New combinations include Badecla badaca (Hewitson), Badecla picentia (Hewitson), Badecla quadramacula (Austin & K. -
CHECKLIST of WISCONSIN MOTHS (Superfamilies Mimallonoidea, Drepanoidea, Lasiocampoidea, Bombycoidea, Geometroidea, and Noctuoidea)
WISCONSIN ENTOMOLOGICAL SOCIETY SPECIAL PUBLICATION No. 6 JUNE 2018 CHECKLIST OF WISCONSIN MOTHS (Superfamilies Mimallonoidea, Drepanoidea, Lasiocampoidea, Bombycoidea, Geometroidea, and Noctuoidea) Leslie A. Ferge,1 George J. Balogh2 and Kyle E. Johnson3 ABSTRACT A total of 1284 species representing the thirteen families comprising the present checklist have been documented in Wisconsin, including 293 species of Geometridae, 252 species of Erebidae and 584 species of Noctuidae. Distributions are summarized using the six major natural divisions of Wisconsin; adult flight periods and statuses within the state are also reported. Examples of Wisconsin’s diverse native habitat types in each of the natural divisions have been systematically inventoried, and species associated with specialized habitats such as peatland, prairie, barrens and dunes are listed. INTRODUCTION This list is an updated version of the Wisconsin moth checklist by Ferge & Balogh (2000). A considerable amount of new information from has been accumulated in the 18 years since that initial publication. Over sixty species have been added, bringing the total to 1284 in the thirteen families comprising this checklist. These families are estimated to comprise approximately one-half of the state’s total moth fauna. Historical records of Wisconsin moths are relatively meager. Checklists including Wisconsin moths were compiled by Hoy (1883), Rauterberg (1900), Fernekes (1906) and Muttkowski (1907). Hoy's list was restricted to Racine County, the others to Milwaukee County. Records from these publications are of historical interest, but unfortunately few verifiable voucher specimens exist. Unverifiable identifications and minimal label data associated with older museum specimens limit the usefulness of this information. Covell (1970) compiled records of 222 Geometridae species, based on his examination of specimens representing at least 30 counties. -
Volume 4 Number 1 Oregon State University February I998 , ,.;
Volume 4 Number 1 Oregon State University February I998 Clay Gautier Checklist: Asteraceac by Rhoda Love by Scon Sundherg und Kenton L. Chambers We are pleased to announce the completion of the Clay Gaulier is fhe newatmember of the &gon checklist of Oregon composites (Astmceae)by the AtlasEoject Leaders group. Hehas volunteered with Oregon Vascular mant CbecklktProject. The Scott Sundberg and o& since 1996. 44Clayhas been Asteraceae checklist was written by Eenton.chambers instrumental in deveIoping an ektmnic version of the and Scott Sundberg andis currently being reviewed by OregonPlant Aflas that willbe fully intmmfive and Checklist project members. It is a pomon of thc Oregon accessibIeto the public via tb Iaremeff' says Scott. va.scular 61At Checklist, which iQpreparatoryto a new Clay, who commuIes'ta~0SUhmF&gene,brings a Flora of Oregon. The Asteraceae Checklist includes special combination of skills tbfhis task: underpdLta@ accepted names of all Oregon tam [species, subspecies Ad graduate workcinec~logyand 12 years of experience and varieties) growing outside of cultivation, as well as as a proEssional software'developer. common m,plant origin (native or introduced) and Clay was born in San Francis~oin the niid-B%es comments on taxonomic problems and hybridization. and grew np in California and Nevada. He says, "My Each recod iq backed up by annotated herbarium wife, Gail Baker, and I both went tb Redwood High specimens or by reference to a published monograph or School in Marin Countv when I was a freshman, but we revision. The, ,.; accepted. namcs.will.be mssslerenced to didn't mypcq~y~~+l ~:~?,l$er in B&.o@gPli; . -
Specimen Records for North American Lepidoptera (Insecta) in the Oregon State Arthropod Collection. Lycaenidae Leach, 1815 and Riodinidae Grote, 1895
Catalog: Oregon State Arthropod Collection 2019 Vol 3(2) Specimen records for North American Lepidoptera (Insecta) in the Oregon State Arthropod Collection. Lycaenidae Leach, 1815 and Riodinidae Grote, 1895 Jon H. Shepard Paul C. Hammond Christopher J. Marshall Oregon State Arthropod Collection, Department of Integrative Biology, Oregon State University, Corvallis OR 97331 Cite this work, including the attached dataset, as: Shepard, J. S, P. C. Hammond, C. J. Marshall. 2019. Specimen records for North American Lepidoptera (Insecta) in the Oregon State Arthropod Collection. Lycaenidae Leach, 1815 and Riodinidae Grote, 1895. Catalog: Oregon State Arthropod Collection 3(2). (beta version). http://dx.doi.org/10.5399/osu/cat_osac.3.2.4594 Introduction These records were generated using funds from the LepNet project (Seltmann) - a national effort to create digital records for North American Lepidoptera. The dataset published herein contains the label data for all North American specimens of Lycaenidae and Riodinidae residing at the Oregon State Arthropod Collection as of March 2019. A beta version of these data records will be made available on the OSAC server (http://osac.oregonstate.edu/IPT) at the time of this publication. The beta version will be replaced in the near future with an official release (version 1.0), which will be archived as a supplemental file to this paper. Methods Basic digitization protocols and metadata standards can be found in (Shepard et al. 2018). Identifications were confirmed by Jon Shepard and Paul Hammond prior to digitization. Nomenclature follows that of (Pelham 2008). Results The holdings in these two families are extensive. Combined, they make up 25,743 specimens (24,598 Lycanidae and 1145 Riodinidae).