Order RAJIFORMES
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Notoraja Martinezi Sp. Nov., a New Species of Deepwater Skate and The
Zootaxa 4098 (1): 179–190 ISSN 1175-5326 (print edition) http://www.mapress.com/j/zt/ Article ZOOTAXA Copyright © 2016 Magnolia Press ISSN 1175-5334 (online edition) http://doi.org/10.11646/zootaxa.4098.1.9 http://zoobank.org/urn:lsid:zoobank.org:pub:C7826AC7-6493-42D3-A0A4-89FEBB5AB3E3 Notoraja martinezi sp. nov., a new species of deepwater skate and the first record of the genus Notoraja Ishiyama, 1958 (Rajiformes: Arhynchobatidae) from the eastern Pacific Ocean FRANCISCO J. CONCHA1,2,7, DAVID A. EBERT3,4,5 & DOUGLAS J. LONG4,6 1Department of Ecology & Evolutionary Biology, University of Connecticut. 75 North Eagleville Road – Unit 3043 Storrs, CT, 06269, USA. E-mail: [email protected] 2Facultad de Ciencias del Mar y de Recursos Naturales, Universidad de Valparaíso. Av. Borgoño 16344, Viña del Mar, Chile. 3Pacific Shark Research Center, Moss Landing Marine Laboratories, Moss Landing, CA 95039, USA. 4Department of Ichthyology, California Academy of Sciences, 55 Music Concourse Drive, San Francisco, CA. 94118, USA. 5South African Institute for Aquatic Biodiversity, Private Bag 1015, Grahamstown, 6140, South Africa. E-mail: [email protected] state.edu. 6Department of Biology, St. Mary’s College, 1928 St. Mary’s Road, Moraga, California 94575. E-mail: [email protected] 7Corresponding author Abstract A new arhynchobatid skate, Notoraja martinezi, sp. nov., is described from four specimens collected from the eastern Central Pacific from Costa Rica to Ecuador and between depths of 1256–1472 m. The new species is placed in the genus Notoraja based on the long and flexible rostrum and its proportionally long tail with respect to total length. -
The Evolutionary Origins of Vertebrate Haematopoiesis: Insights from Non-Vertebrate Chordates
THE EVOLUTIONARY ORIGINS OF VERTEBRATE HAEMATOPOIESIS: INSIGHTS FROM NON-VERTEBRATE CHORDATES A thesis submitted to the University of Manchester for the degree of MPhil Evolutionary Biology in the Faculty of Life Sciences. 2015 PETER E D MILLS 2 LIST OF CONTENTS List of Contents 2 List of Figures 4 List of Abbreviations 5 Abstract 6 Declaration 7 Copyright Statement 7 Introduction 8 Haematopoiesis 11 In gnathostomes 11 In cyclostomes 18 In ascidians 20 In amphioxi 22 In sea urchins 24 In fruit flies 24 The evolution of haematopoiesis 26 Haematopoiesis and innate immune cells 26 Lymphocytes 26 Erythrocytes 27 Aims 28 The basic aim 28 Choice of genes 30 Homologue identification 31 Analysis of EST collections 31 In situ hybridisations 32 gata1/2/3 rescue experiment 34 gata1/2/3 reporter experiment 36 3 Methods 39 Homologue identification 39 Analysis of EST data 39 Collection of amphioxus embryos 40 Collection of ascidian embryos 40 Collection of zebrafish embryos 40 Cloning genes 41 Whole mount in situ hybridisations 41 Knockdown and rescue of gata1 42 gata1/2/3:mCherry reporter 42 Results Homologues in non-gnathostomes 44 Gene expression in ascidian and amphioxus embryos 48 Knockdown of gata1 and rescue with gata1/2/3 51 gata1/2/3:mCherry reporter expression 52 Discussion Non-chordate gene expression 54 Amphioxus gene expression 54 Ascidian gene expression 56 Cyclostome gene expression 59 gata1/2/3 rescue experiment 60 gata1/2/3 reporter experiment 62 Evolution of erythrocytes 63 Evolution of lymphocytes 67 Conclusion 72 References 75 (Word count: 26,246) 4 LIST OF FIGURES Figure 1 – Phylogenetic relationships between the organisms studied in this thesis. -
Bibliography Database of Living/Fossil Sharks, Rays and Chimaeras (Chondrichthyes: Elasmobranchii, Holocephali) Papers of the Year 2016
www.shark-references.com Version 13.01.2017 Bibliography database of living/fossil sharks, rays and chimaeras (Chondrichthyes: Elasmobranchii, Holocephali) Papers of the year 2016 published by Jürgen Pollerspöck, Benediktinerring 34, 94569 Stephansposching, Germany and Nicolas Straube, Munich, Germany ISSN: 2195-6499 copyright by the authors 1 please inform us about missing papers: [email protected] www.shark-references.com Version 13.01.2017 Abstract: This paper contains a collection of 803 citations (no conference abstracts) on topics related to extant and extinct Chondrichthyes (sharks, rays, and chimaeras) as well as a list of Chondrichthyan species and hosted parasites newly described in 2016. The list is the result of regular queries in numerous journals, books and online publications. It provides a complete list of publication citations as well as a database report containing rearranged subsets of the list sorted by the keyword statistics, extant and extinct genera and species descriptions from the years 2000 to 2016, list of descriptions of extinct and extant species from 2016, parasitology, reproduction, distribution, diet, conservation, and taxonomy. The paper is intended to be consulted for information. In addition, we provide information on the geographic and depth distribution of newly described species, i.e. the type specimens from the year 1990- 2016 in a hot spot analysis. Please note that the content of this paper has been compiled to the best of our abilities based on current knowledge and practice, however, -
Sexually Dimorphic Morphological Characters in Five North Atlantic Deepwater Skates (Chondrichthyes: Rajiformes)
Hindawi Publishing Corporation Journal of Marine Biology Volume 2011, Article ID 842821, 18 pages doi:10.1155/2011/842821 Research Article Sexually Dimorphic Morphological Characters in Five North Atlantic Deepwater Skates (Chondrichthyes: Rajiformes) Alexei M. Orlov1 and Charles F. Cotton2 1 Russian Federal Research Institute of Fisheries and Oceanography (VNIRO), 17 V. Krasnoselskaya, Moscow, 107140, Russia 2 Department of Fisheries Science, Virginia Institute of Marine Science, P.O. Box 1346, Gloucester Point, VA 23062, USA Correspondence should be addressed to Alexei M. Orlov, [email protected] Received 16 March 2011; Accepted 9 May 2011 Academic Editor: Jakov Dulciˇ c´ Copyright © 2011 A. M. Orlov and C. F. Cotton. This is an open access article distributed under the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. Skates exhibit a variety of manifestations of sexual dimorphism. However, this phenomenon has been poorly documented in deepwater species. New data on the sexual dimorphism of five species of deepwater skates from the North Atlantic Ocean are presented: Amblyraja jenseni, Bathyraja pallida, Bathyraja richardsoni, Rajella bigelowi, and R. kukujevi. These skates exhibit sexual dimorphism most frequently in interorbital width, disc length and width, length of the third gill slit, horizontal diameter of the orbit, length of the fifth gill slit, space between the first and fifth gill slits, length of the second dorsal fin base, mouth width, length and width of each lobe of the nasal curtain, distance from the snout to the center of anus, distance from the snout tip to the point of maximum disc width, length of the lateral fold, length of the orbit + spiracle (measured together), tail height at the pelvic fin tips, and the number of median thorns. -
Age, Growth, and Sexual Maturity of the Deepsea Skate, Bathyraja
AGE, GROWTH, AND SEXUAL MATURITY OF THE DEEPSEA SKATE, BATHYRAJA ABYSSICOLA A Thesis Presented to the Faculty of Alaska Pacific University In Partial Fulfillment of the Requirements For the Degree of Master of Science in Environmental Science by Cameron Murray Provost April 2016 Pro Q u est Nu m b er: 10104548 All rig hts reserv e d INF O RM ATI O N T O ALL USERS Th e q u a lity of this re pro d u ctio n is d e p e n d e nt u p o n th e q u a lity of th e c o p y su b mitt e d. In th e unlik e ly e v e nt th a t th e a uth or did n ot se n d a c o m ple t e m a nuscript a n d th ere are missin g p a g es, th ese will b e n ot e d. Also, if m a t eria l h a d to b e re m o v e d, a n ot e will in dic a t e th e d e le tio n. Pro Q u est 10104548 Pu blish e d b y Pro Q u est LL C (2016). C o p yrig ht of th e Dissert a tio n is h e ld b y th e A uth or. All rig hts reserv e d. This w ork is prot e ct e d a g a inst un a uth orize d c o p yin g un d er Title 17, Unit e d St a t es C o d e Microform Editio n © Pro Q u est LL C . -
Extinction Risk and Conservation of the World's Sharks and Rays
RESEARCH ARTICLE elife.elifesciences.org Extinction risk and conservation of the world’s sharks and rays Nicholas K Dulvy1,2*, Sarah L Fowler3, John A Musick4, Rachel D Cavanagh5, Peter M Kyne6, Lucy R Harrison1,2, John K Carlson7, Lindsay NK Davidson1,2, Sonja V Fordham8, Malcolm P Francis9, Caroline M Pollock10, Colin A Simpfendorfer11,12, George H Burgess13, Kent E Carpenter14,15, Leonard JV Compagno16, David A Ebert17, Claudine Gibson3, Michelle R Heupel18, Suzanne R Livingstone19, Jonnell C Sanciangco14,15, John D Stevens20, Sarah Valenti3, William T White20 1IUCN Species Survival Commission Shark Specialist Group, Department of Biological Sciences, Simon Fraser University, Burnaby, Canada; 2Earth to Ocean Research Group, Department of Biological Sciences, Simon Fraser University, Burnaby, Canada; 3IUCN Species Survival Commission Shark Specialist Group, NatureBureau International, Newbury, United Kingdom; 4Virginia Institute of Marine Science, College of William and Mary, Gloucester Point, United States; 5British Antarctic Survey, Natural Environment Research Council, Cambridge, United Kingdom; 6Research Institute for the Environment and Livelihoods, Charles Darwin University, Darwin, Australia; 7Southeast Fisheries Science Center, NOAA/National Marine Fisheries Service, Panama City, United States; 8Shark Advocates International, The Ocean Foundation, Washington, DC, United States; 9National Institute of Water and Atmospheric Research, Wellington, New Zealand; 10Global Species Programme, International Union for the Conservation -
Skates and Rays Diversity, Exploration and Conservation – Case-Study of the Thornback Ray, Raja Clavata
UNIVERSIDADE DE LISBOA FACULDADE DE CIÊNCIAS DEPARTAMENTO DE BIOLOGIA ANIMAL SKATES AND RAYS DIVERSITY, EXPLORATION AND CONSERVATION – CASE-STUDY OF THE THORNBACK RAY, RAJA CLAVATA Bárbara Marques Serra Pereira Doutoramento em Ciências do Mar 2010 UNIVERSIDADE DE LISBOA FACULDADE DE CIÊNCIAS DEPARTAMENTO DE BIOLOGIA ANIMAL SKATES AND RAYS DIVERSITY, EXPLORATION AND CONSERVATION – CASE-STUDY OF THE THORNBACK RAY, RAJA CLAVATA Bárbara Marques Serra Pereira Tese orientada por Professor Auxiliar com Agregação Leonel Serrano Gordo e Investigadora Auxiliar Ivone Figueiredo Doutoramento em Ciências do Mar 2010 The research reported in this thesis was carried out at the Instituto de Investigação das Pescas e do Mar (IPIMAR - INRB), Unidade de Recursos Marinhos e Sustentabilidade. This research was funded by Fundação para a Ciência e a Tecnologia (FCT) through a PhD grant (SFRH/BD/23777/2005) and the research project EU Data Collection/DCR (PNAB). Skates and rays diversity, exploration and conservation | Table of Contents Table of Contents List of Figures ............................................................................................................................. i List of Tables ............................................................................................................................. v List of Abbreviations ............................................................................................................. viii Agradecimentos ........................................................................................................................ -
An Introduction to the Classification of Elasmobranchs
An introduction to the classification of elasmobranchs 17 Rekha J. Nair and P.U Zacharia Central Marine Fisheries Research Institute, Kochi-682 018 Introduction eyed, stomachless, deep-sea creatures that possess an upper jaw which is fused to its cranium (unlike in sharks). The term Elasmobranchs or chondrichthyans refers to the The great majority of the commercially important species of group of marine organisms with a skeleton made of cartilage. chondrichthyans are elasmobranchs. The latter are named They include sharks, skates, rays and chimaeras. These for their plated gills which communicate to the exterior by organisms are characterised by and differ from their sister 5–7 openings. In total, there are about 869+ extant species group of bony fishes in the characteristics like cartilaginous of elasmobranchs, with about 400+ of those being sharks skeleton, absence of swim bladders and presence of five and the rest skates and rays. Taxonomy is also perhaps to seven pairs of naked gill slits that are not covered by an infamously known for its constant, yet essential, revisions operculum. The chondrichthyans which are placed in Class of the relationships and identity of different organisms. Elasmobranchii are grouped into two main subdivisions Classification of elasmobranchs certainly does not evade this Holocephalii (Chimaeras or ratfishes and elephant fishes) process, and species are sometimes lumped in with other with three families and approximately 37 species inhabiting species, or renamed, or assigned to different families and deep cool waters; and the Elasmobranchii, which is a large, other taxonomic groupings. It is certain, however, that such diverse group (sharks, skates and rays) with representatives revisions will clarify our view of the taxonomy and phylogeny in all types of environments, from fresh waters to the bottom (evolutionary relationships) of elasmobranchs, leading to a of marine trenches and from polar regions to warm tropical better understanding of how these creatures evolved. -
(Chondrichthyes : Rajidae), Okamejei Mengae from the South China Sea
Korean J. Ichthyol. 19(1), 57~65, 2007 A New Species of Skate (Chondrichthyes : Rajidae), Okamejei mengae from the South China Sea Choong-Hoon Jeong*, Tetsuji Nakabo1 and Han-Ling Wu2 Research Center for Coastal Environments of Yellow Sea, Inha University, Incheon 402-751, Republic of Korea 1The Kyoto University Museum, c/o Division of Applied Biosciences, Kyoto University, Kyoto 606-8501, Japan 2Laboratory of Fishes, Shanghai Fisheries University, 334 Jun Gong Rd., Shanghai, 200090, People’s of Republic of China A new species of the rajid genus Okamejei is described from a single specimen (295 mm TL) from off Shantou, Gwangdong in the South China Sea. The new species differs from all other congeners in the following combination of characters: snout pointed, dorsal head length 6.7 times interorbital width, tail moderately wide and long, its length 48.5% TL, interdorsal distance less than length of first dorsal fin base, postdorsal tail short as 5.8% TL, small evenly distributed dark brownish spots, without ocelli on dorsal surface of disc, pores of ampullae of Lorenzini on ventral surface distributed from snout tip to distal end of metapterygium, scapulocoracoid high, its height about 1.4 times rear corner height, trunk vertebrae 23, predorsal tail vertebrae 50 and pectoral fin radials 96. Key words : New species, Okamejei mengae, Rajidae, South China Sea, Chondri- chthyes size and condition of the anterior margin of the Introduction neurocranial fontanelle. Okamejei was later ele- vated to generic rank by McEachran and Dunn The family Rajidae is cosmopolitan, encompass- (1998). To date, genus Okamejei comprised nine ing about thirty genera and more than 230 nomi- species, three distributed in the Indian Ocean nal species, as well as about 50 undescribed spe- (Stehmann, 1976; Fricke and Al-Hassan, 1995) cies (McEachran and Miyake, 1990a, b; McEach- and six in the western North Pacific (reviewed by ran and Dunn, 1998). -
Classification and Systematic Arrangement
Introduction 13 CLASSIFICATION AND SYSTEMATIC ARRANGEMENT Considering that the purpose of this document is to Class Chondrichthyes (cartilaginous fishes) provide a simple user-friendly guide for species identification, no reference will be found here to Subclass Holocephali (chimaeras) dichotomy keys for single species. It is important that the classification used in this guide be defined, Order Chimaeriformes (chimaera and silver sharks) as available literature is not always in agreement Subclass Elasmobranchii (sharks) with this presentation. The classification of this group is still under review as no consensus has Superorder Squalomorphi (squalomorph sharks) been found to reconcile different authors’ positions. Order Hexanchiformes (cow and frilled sharks) For more information and further specific details on the taxonomy and biology of cartilaginous fish Order Squaliformes (dogfish sharks) species, refer to Tortonese, 1956; Hureau and Monod 1979; Whitehead et al., 1984; Fischer et al., Order Squatiniformes (angel sharks) 1987; Fredj and Maurin, 1987; Compagno, 1988, 2005; Nelson, 1994; Shirai, 1996; Mould, 1998. The Order Pristiophoriformes (sawsharks) * consultation of FishBase http://www.fishbase.org Order Rajiformes (batoids) (Froese and Pauly, 2000) proved very useful. The most fundamental references are Compagno’s Superorder Galeomorphi (galeomorph sharks) catalogues issued in 1984 and his recent revision partially issued in 2001. Order Heterodontiformes (bullhead sharks) * This guide follows the systematic organization Order -
Updated Checklist of Marine Fishes (Chordata: Craniata) from Portugal and the Proposed Extension of the Portuguese Continental Shelf
European Journal of Taxonomy 73: 1-73 ISSN 2118-9773 http://dx.doi.org/10.5852/ejt.2014.73 www.europeanjournaloftaxonomy.eu 2014 · Carneiro M. et al. This work is licensed under a Creative Commons Attribution 3.0 License. Monograph urn:lsid:zoobank.org:pub:9A5F217D-8E7B-448A-9CAB-2CCC9CC6F857 Updated checklist of marine fishes (Chordata: Craniata) from Portugal and the proposed extension of the Portuguese continental shelf Miguel CARNEIRO1,5, Rogélia MARTINS2,6, Monica LANDI*,3,7 & Filipe O. COSTA4,8 1,2 DIV-RP (Modelling and Management Fishery Resources Division), Instituto Português do Mar e da Atmosfera, Av. Brasilia 1449-006 Lisboa, Portugal. E-mail: [email protected], [email protected] 3,4 CBMA (Centre of Molecular and Environmental Biology), Department of Biology, University of Minho, Campus de Gualtar, 4710-057 Braga, Portugal. E-mail: [email protected], [email protected] * corresponding author: [email protected] 5 urn:lsid:zoobank.org:author:90A98A50-327E-4648-9DCE-75709C7A2472 6 urn:lsid:zoobank.org:author:1EB6DE00-9E91-407C-B7C4-34F31F29FD88 7 urn:lsid:zoobank.org:author:6D3AC760-77F2-4CFA-B5C7-665CB07F4CEB 8 urn:lsid:zoobank.org:author:48E53CF3-71C8-403C-BECD-10B20B3C15B4 Abstract. The study of the Portuguese marine ichthyofauna has a long historical tradition, rooted back in the 18th Century. Here we present an annotated checklist of the marine fishes from Portuguese waters, including the area encompassed by the proposed extension of the Portuguese continental shelf and the Economic Exclusive Zone (EEZ). The list is based on historical literature records and taxon occurrence data obtained from natural history collections, together with new revisions and occurrences. -
With Comments on the Interrelationships of Gurgesiellidae and Pseudorajidae (Pisces, Rajoidei)
BULLETIN OF MARINE SCIENCE, 29(4): 530-553, 1979 A FURTHER DESCRIPTION OF GURGES/ELLA FURVESCENS WITH COMMENTS ON THE INTERRELATIONSHIPS OF GURGESIELLIDAE AND PSEUDORAJIDAE (PISCES, RAJOIDEI) John D. McEachran and Leonard J. V. Compagno ABSTRACT Additional specimens of Gurgesiella furveseens are used to supplement the original de- scription which was based solely on the holotype. The clasper, neurocranium, pectoral girdle, and pelvic girdle of this species are described and compared with those of the only known congener, G. at/antiea, and with Pseudorajajiseheri. Comparisons support Hulley's (1972b) removal of G. atlantica from Pseudoruja to Gurgesiella. Gurgesiella and Pseudo/'aja share many character states which are considered to be derived within Rajoidei, negating the hypothesis that their resemblances are due to synplesiomorphies. Gurges;eJ/a resembles Allacanlhobalis and Cruriraja in clasper morphology and AllaCtlllthobatis, Cruriruja, Raja (Rioraja) and R. (At/an/oruja) in the structure of its scapulocoracoid. The scapulocoracoid of Pseudvraja resembles those of some Psammobalis species. Both genera possess reduced rostra, that of Gurgesiella was probably derived from an ancestor with a stout or partially reduced rostrum, while the rostrum of Pseudoraja is too reduced 10 determine if it was derived from the Gurgesiella type or from a more slender Iype. However, Gurgesiella and Pseudvruja share five derived characlers, which according to our present knowledge, are unique within Rajoidei. Thus, Gurgesiella and Pseudoraja appear to be a monophyletic group and their resemblances to other taxa can be explained by secondary relationships, parallelisms and retension of primilive character states. Similarilies in shared derived char- acter states implies that separate families for Gurgesie//a and Pseudoraja arc unwarranted and Gurgesiellidae is merged with Pseudorajidae.