The Cambrian “Explosion” of Metazoans and Molecular Biology: Would Darwin Be Satisfied?
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Timeline of the Evolutionary History of Life
Timeline of the evolutionary history of life This timeline of the evolutionary history of life represents the current scientific theory Life timeline Ice Ages outlining the major events during the 0 — Primates Quater nary Flowers ←Earliest apes development of life on planet Earth. In P Birds h Mammals – Plants Dinosaurs biology, evolution is any change across Karo o a n ← Andean Tetrapoda successive generations in the heritable -50 0 — e Arthropods Molluscs r ←Cambrian explosion characteristics of biological populations. o ← Cryoge nian Ediacara biota – z ← Evolutionary processes give rise to diversity o Earliest animals ←Earliest plants at every level of biological organization, i Multicellular -1000 — c from kingdoms to species, and individual life ←Sexual reproduction organisms and molecules, such as DNA and – P proteins. The similarities between all present r -1500 — o day organisms indicate the presence of a t – e common ancestor from which all known r Eukaryotes o species, living and extinct, have diverged -2000 — z o through the process of evolution. More than i Huron ian – c 99 percent of all species, amounting to over ←Oxygen crisis [1] five billion species, that ever lived on -2500 — ←Atmospheric oxygen Earth are estimated to be extinct.[2][3] Estimates on the number of Earth's current – Photosynthesis Pong ola species range from 10 million to 14 -3000 — A million,[4] of which about 1.2 million have r c been documented and over 86 percent have – h [5] e not yet been described. However, a May a -3500 — n ←Earliest oxygen 2016 -
Les « Plumes » De L'édiacarien, Un Groupe Animal Disparu ?
1/7 Les « plumes » de l'Édiacarien, un groupe animal disparu ? 19/09/2018 Auteur(s) : Cyril Langlois ENS Lyon - Préparation à l'agrégation SV-STU Publié par : Olivier Dequincey Résumé Stromatoveris et autres fossiles ”édiacariens” en frondes, en plumes ou en pneu : nouvelle phylogénie basée sur une idée ancienne et l'étude comparative de nombreux spécimens récemment exhumés. Table des matières Rappel : les fossiles de l'Édiacarien Stromatoveris, l'édiacarien du Cambrien Conclusion Bibliographie Les fossiles découverts dès 1946 dans les collines d'Édiacara, en Australie, mais aussi, entre autres, en Russie et en Namibie, et datés de la fin du Protérozoïque, intriguent les paléontologues depuis plusieurs décennies. Si certains des fossiles décrits ont pu être rattachés à des groupes d'organismes déjà connus ou encore existants, d'autres restent énigmatiques. Ces derniers présentent, pour la plupart, une morphologie caractéristique en « plume » ou en « fronde » subdivisée en rameaux et branches selon une structure fractale. Leur position phylogénétique comme leur mode de vie ont fait l'objet de diverses interprétations : groupe entièrement disparu ? Sous-ensemble de Cnidaires ? Osmotrophes ? Détritivores ? Récemment, des fossiles semblables ont été exhumés dans un site chinois plus récent, daté du Cambrien, preuve que ces organismes existaient encore au début du Phanérozoïque. Par un examen approfondi de ces fossiles et de leurs homologues protérozoïque, portant sur plus de 200 spécimens, une chercheuse britannique et son collègue chinois proposent une analyse phylogénétique qui regroupe l'ensemble de ces organismes dans un unique clade monophylétique, entièrement disparu, groupe-frère de tous les autres animaux (Hoyal Cuthill et Han, 2018 [3]). -
Assembly of the Cnidarian Camera-Type Eye from Vertebrate-Like Components
Assembly of the cnidarian camera-type eye from vertebrate-like components Zbynek Kozmik*†, Jana Ruzickova*‡, Kristyna Jonasova*‡, Yoshifumi Matsumoto§, Pavel Vopalensky*, Iryna Kozmikova*, Hynek Strnad*, Shoji Kawamura§, Joram Piatigorsky†¶, Vaclav Paces*, and Cestmir Vlcek*† *Institute of Molecular Genetics, Academy of Sciences of the Czech Republic, Videnska 1083, 142 20 Prague 4, Czech Republic; §Graduate School of Frontier Sciences, University of Tokyo, 5-1-5 Kashiwanoha, Kashiwa, Chiba 277-8562, Japan; and ¶National Eye Institute, National Institutes of Health, Bethesda, MD 20892-3655 Edited by Eviatar Nevo, University of Haifa, Haifa, Israel, and approved April 11, 2008 (received for review January 14, 2008) Animal eyes are morphologically diverse. Their assembly, however, containing Tripedalia eyes have sophisticated visual optics as do always relies on the same basic principle, i.e., photoreceptors advanced bilaterian phyla (11). located in the vicinity of dark shielding pigment. Cnidaria as the In the present work, we characterize genes required for the likely sister group to the Bilateria are the earliest branching phylum assembly of camera-type eyes in Tripedalia. We show that the with a well developed visual system. Here, we show that camera- genetic building blocks typical of vertebrate eyes, namely ciliary type eyes of the cubozoan jellyfish, Tripedalia cystophora, use opsin and the melanogenic pathway, are used by the cubozoan genetic building blocks typical of vertebrate eyes, namely, a ciliary eyes. Although our findings of unsuspected parallelism are phototransduction cascade and melanogenic pathway. Our find- consistent with either an independent origin or common ances- ings indicative of parallelism provide an insight into eye evolution. try of cubozoan and vertebrate eyes, we believe the present data Combined, the available data favor the possibility that vertebrate favor the former alternative. -
Functional Replacement of a Primary Metabolic Pathway Via Multiple Independent Eukaryote-To-Eukaryote Gene Transfers and Selective Retention
doi: 10.1111/j.1420-9101.2009.01797.x Functional replacement of a primary metabolic pathway via multiple independent eukaryote-to-eukaryote gene transfers and selective retention A. M. NEDELCU, A. J. C. BLAKNEY & K. D. LOGUE Biology Department, University of New Brunswick, Fredericton, NB, Canada Keywords: Abstract ammonium transporter; Although lateral gene transfer (LGT) is now recognized as a major force in the glutamate synthase; evolution of prokaryotes, the contribution of LGT to the evolution and glutamine synthetase; diversification of eukaryotes is less understood. Notably, transfers of complete lateral gene transfer; pathways are believed to be less likely between eukaryotes, because the Monosiga; successful transfer of a pathway requires the physical clustering of functionally primary metabolic pathway. related genes. Here, we report that in one of the closest unicellular relatives of animals, the choanoflagellate, Monosiga, three genes whose products work together in the glutamate synthase cycle are of algal origin. The concerted retention of these three independently acquired genes is best explained as the consequence of a series of adaptive replacement events. More generally, this study argues that (i) eukaryote-to-eukaryote transfers of entire metabolic pathways are possible, (ii) adaptive functional replacements of primary pathways can occur, and (iii) functional replacements involving eukaryotic genes are likely to have also contributed to the evolution of eukaryotes. Lastly, these data underscore the potential contribution of algal genes to the evolution of nonphotosynthetic lineages. Palmer, 2008). On the other hand, as functional replace- Introduction ments can be either adaptive or selectively neutral, their Lateral gene transfer (LGT) is currently recognized as a impact on the recipient’s adaptive or long-term evolu- major force in the evolution of prokaryotes (e.g. -
1 Eric Davidson and Deep Time Douglas H. Erwin Department Of
Eric Davidson and Deep Time Douglas H. Erwin Department of Paleobiology, MRC-121 National Museum of Natural History Washington, DC 20013-7012 E-mail: [email protected] Abstract Eric Davidson had a deep and abiding interest in the role developmental mechanisms played in the generating evolutionary patterns documented in deep time, from the origin of the euechinoids to the processes responsible for the morphological architectures of major animal clades. Although not an evolutionary biologist, Davidson’s interests long preceded the current excitement over comparative evolutionary developmental biology. Here I discuss three aspects at the intersection between his research and evolutionary patterns in deep time: First, understanding the mechanisms of body plan formation, particularly those associated with the early diversification of major metazoan clades. Second, a critique of early claims about ancestral metazoans based on the discoveries of highly conserved genes across bilaterian animals. Third, Davidson’s own involvement in paleontology through a collaborative study of the fossil embryos from the Ediacaran Doushantuo Formation in south China. Keywords Eric Davidson – Evolution – Gene regulatory networks – Bodyplan – Cambrian Radiation – Echinoderms 1 Introduction Eric Davidson was a developmental biologist, not an evolutionary biologist or paleobiologist. He was driven to understand the mechanisms of gene regulatory control and how they controlled development, but this focus was deeply embedded within concerns about the relationship between development and evolution. Questions about the origin of major metazoan architectures or body plans were central to Eric’s concerns since at least the late 1960s. His 1971 paper with Roy Britten includes a section on “The Evolutionary Growth of the Genome” illustrated with a figure depicting variations in genome size in major animal groups and a metazoan phylogeny (Britten and Davidson 1971). -
What Is Macroevolution?
[Palaeontology, 2020, pp. 1–11] FRONTIERS IN PALAEONTOLOGY WHAT IS MACROEVOLUTION? by MICHAEL HAUTMANN Pal€aontologisches Institut und Museum, Universit€at Zurich,€ Karl-Schmid Strasse 4, 8006 Zurich,€ Switzerland; [email protected] Typescript received 14 June 2019; accepted in revised form 15 October 2019 Abstract: Definitions of macroevolution fall into three cat- intraspecific competition as a mediator between selective egories: (1) evolution of taxa of supraspecific rank; (2) evolu- agents and evolutionary responses. This mediating role of tion on the grand time-scale; and (3) evolution that is guided intraspecific competition occurs in the presence of sexual by sorting of interspecific variation (as opposed to sorting of reproduction and has therefore no analogue at the macroevo- intraspecific variation in microevolution). Here, it is argued lutionary level where species are the evolutionary units. Com- that only definition 3 allows for a consistent separation of petition between species manifests both on the macroevolution and microevolution. Using this definition, spe- microevolutionary and macroevolutionary level, but with dif- ciation has both microevolutionary and macroevolutionary ferent effects. In microevolution, interspecific competition aspects: the process of morphological transformation is spurs evolutionary divergence, whereas it is a potential driver microevolutionary, but the variation among species that it pro- of extinction at the macroevolutionary level. Recasting the Red duces is macroevolutionary, as is the rate at which speciation Queen hypothesis in a macroevolutionary framework suggests occurs. Selective agents may have differential effects on that the effects of interspecific competition result in a positive intraspecific and interspecific variation, with three possible sit- correlation between origination and extinction rates, confirm- uations: effect at one level only, effect at both levels with the ing empirical observations herein referred to as Stanley’s rule. -
Contributions to the Neoproterozoic Geobiology
Contributions to the Neoproterozoic Geobiology Bing Shen Dissertation submitted to the faculty of the Virginia Polytechnic Institute and State University in partial fulfillment of the requirements for the degree of Doctor of Philosophy In Department of Geosciences Shuhai Xiao (Chair) Robert Bodnar Michal Kowalewski J. Fred Read November 29, 2007 Blacksburg, Virginia Key words: Neoproterozoic, Ediacaran, Ediacara fossils, China, Disparity, Sulfur isotope, Carbon isotope Copyright 2007, Bing Shen Contributions to the Neoproterozoic Geobiology Bing Shen Abstract This thesis makes several contributions to improve our understanding of the Neoproterozoic Paleobiology. In chapter 1, a comprehensive quantitative analysis of the Ediacara fossils indicates that the oldest Ediacara assemblage—the Avalon assemblage— already encompassed the full range of Ediacara morphospace. A comparable morphospace range was occupied by the subsequent White Sea and Nama assemblages, although it was populated differently. In contrast, taxonomic richness increased in the White Sea assemblage and declined in the Nama assemblage. The Avalon morphospace expansion mirrors the Cambrian explosion, and both may reflect similar underlying mechanisms. Chapter 2 describes problematic macrofossils collected from the Neoproterozoic slate of the upper Zhengmuguan Formation in North China and sandstone of the Zhoujieshan Formation in Chaidam. Some of these fossils were previously interpreted as animal traces. Our study of these fossils recognizes four genera and five species. None of these taxa can be interpreted as animal traces. Instead, they are problematic body fossils of unresolved phylogenetic affinities. Chapter 3 reports stable isotopes of the Zhamoketi cap dolostone atop the Tereeken diamictite in the Quruqtagh area, eastern Chinese Tianshan. Our new data indicate that carbonate associated sulfate (CAS) abundance decreases rapidly in the basal 34 cap dolostone and δ SCAS composition varies between +9‰ and +15‰ in the lower 2.5 34 m. -
Chordates (Phylum Chordata)
A short story Leathem Mehaffey, III, Fall 201993 The First Chordates (Phylum Chordata) • Chordates (our phylum) first appeared in the Cambrian, 525MYA. 94 Invertebrates, Chordates and Vertebrates • Invertebrates are all animals not chordates • Generally invertebrates, if they have hearts, have dorsal hearts; if they have a nervous system it is usually ventral. • All vertebrates are chordates, but not all chordates are vertebrates. • Chordates: • Dorsal notochord • Dorsal nerve chord • Ventral heart • Post-anal tail • Vertebrates: Amphioxus: archetypal chordate • Dorsal spinal column (articulated) and skeleton 95 Origin of the Chordates 96 Haikouichthys Myllokunmingia Note the rounded extension to Possibly the oldest the head bearing sensory vertebrate: showed gill organs bars and primitive vertebral elements Early and primitive agnathan vertebrates of the Early Cambrian (530MYA) Pikaia Note: these organisms were less Primitive chordate, than an inch long. similar to Amphioxus 97 The Cambrian/Ordovician Extinction • Somewhere around 488 million years ago something happened to cause a change in the fauna of the earth, heralding the beginning of the Ordovician Period. • Rather than one catastrophe, the late-Cambrian extinction seems to be a series of smaller extinction events. • Historically the change in fauna (mostly trilobites as the index species) was thought to be due to excessive warmth and low oxygen. • But some current findings point to an oxygen spike due perhaps to continental drift into the tropics, driving rapid speciation and consequent replacement of old with new organisms. 98 Welcome to the Ordovician YOU ARE HERE 99 The Ordovician Sea, 488 million years 100 ago The Ordovician Period lasted almost 45 million years, from 489 to 444 MYA. -
Xenacoelomorpha's Significance for Understanding Bilaterian Evolution
Available online at www.sciencedirect.com ScienceDirect Xenacoelomorpha’s significance for understanding bilaterian evolution Andreas Hejnol and Kevin Pang The Xenacoelomorpha, with its phylogenetic position as sister biology models are the fruitfly Drosophila melanogaster and group of the Nephrozoa (Protostomia + Deuterostomia), plays the nematode Caenorhabditis elegans, in which basic prin- a key-role in understanding the evolution of bilaterian cell types ciples of developmental processes have been studied in and organ systems. Current studies of the morphological and great detail. It might be because the field of evolutionary developmental diversity of this group allow us to trace the developmental biology — EvoDevo — has its origin in evolution of different organ systems within the group and to developmental biology and not evolutionary biology that reconstruct characters of the most recent common ancestor of species under investigation are often called ‘model spe- Xenacoelomorpha. The disparity of the clade shows that there cies’. Criteria for selected representative species are cannot be a single xenacoelomorph ‘model’ species and primarily the ease of access to collected material and strategic sampling is essential for understanding the evolution their ability to be cultivated in the lab [1]. In some cases, of major traits. With this strategy, fundamental insights into the a supposedly larger number of ancestral characters or a evolution of molecular mechanisms and their role in shaping dominant role in ecosystems have played an additional animal organ systems can be expected in the near future. role in selecting model species. These arguments were Address used to attract sufficient funding for genome sequencing Sars International Centre for Marine Molecular Biology, University of and developmental studies that are cost-intensive inves- Bergen, Thormøhlensgate 55, 5008 Bergen, Norway tigations. -
Durham Research Online
Durham Research Online Deposited in DRO: 23 May 2017 Version of attached le: Accepted Version Peer-review status of attached le: Peer-reviewed Citation for published item: Betts, Marissa J. and Paterson, John R. and Jago, James B. and Jacquet, Sarah M. and Skovsted, Christian B. and Topper, Timothy P. and Brock, Glenn A. (2017) 'Global correlation of the early Cambrian of South Australia : shelly fauna of the Dailyatia odyssei Zone.', Gondwana research., 46 . pp. 240-279. Further information on publisher's website: https://doi.org/10.1016/j.gr.2017.02.007 Publisher's copyright statement: c 2017 This manuscript version is made available under the CC-BY-NC-ND 4.0 license http://creativecommons.org/licenses/by-nc-nd/4.0/ Additional information: Use policy The full-text may be used and/or reproduced, and given to third parties in any format or medium, without prior permission or charge, for personal research or study, educational, or not-for-prot purposes provided that: • a full bibliographic reference is made to the original source • a link is made to the metadata record in DRO • the full-text is not changed in any way The full-text must not be sold in any format or medium without the formal permission of the copyright holders. Please consult the full DRO policy for further details. Durham University Library, Stockton Road, Durham DH1 3LY, United Kingdom Tel : +44 (0)191 334 3042 | Fax : +44 (0)191 334 2971 https://dro.dur.ac.uk Accepted Manuscript Global correlation of the early Cambrian of South Australia: Shelly fauna of the Dailyatia odyssei Zone Marissa J. -
S41467-021-25308-W.Pdf
ARTICLE https://doi.org/10.1038/s41467-021-25308-w OPEN Phylogenomics of a new fungal phylum reveals multiple waves of reductive evolution across Holomycota ✉ ✉ Luis Javier Galindo 1 , Purificación López-García 1, Guifré Torruella1, Sergey Karpov2,3 & David Moreira 1 Compared to multicellular fungi and unicellular yeasts, unicellular fungi with free-living fla- gellated stages (zoospores) remain poorly known and their phylogenetic position is often 1234567890():,; unresolved. Recently, rRNA gene phylogenetic analyses of two atypical parasitic fungi with amoeboid zoospores and long kinetosomes, the sanchytrids Amoeboradix gromovi and San- chytrium tribonematis, showed that they formed a monophyletic group without close affinity with known fungal clades. Here, we sequence single-cell genomes for both species to assess their phylogenetic position and evolution. Phylogenomic analyses using different protein datasets and a comprehensive taxon sampling result in an almost fully-resolved fungal tree, with Chytridiomycota as sister to all other fungi, and sanchytrids forming a well-supported, fast-evolving clade sister to Blastocladiomycota. Comparative genomic analyses across fungi and their allies (Holomycota) reveal an atypically reduced metabolic repertoire for sanchy- trids. We infer three main independent flagellum losses from the distribution of over 60 flagellum-specific proteins across Holomycota. Based on sanchytrids’ phylogenetic position and unique traits, we propose the designation of a novel phylum, Sanchytriomycota. In addition, our results indicate that most of the hyphal morphogenesis gene repertoire of multicellular fungi had already evolved in early holomycotan lineages. 1 Ecologie Systématique Evolution, CNRS, Université Paris-Saclay, AgroParisTech, Orsay, France. 2 Zoological Institute, Russian Academy of Sciences, St. ✉ Petersburg, Russia. 3 St. -
Mcmenamin FM
The Garden of Ediacara • Frontispiece: The Nama Group, Aus, Namibia, August 9, 1993. From left to right, A. Seilacher, E. Seilacher, P. Seilacher, M. McMenamin, H. Luginsland, and F. Pflüger. Photograph by C. K. Brain. The Garden of Ediacara • Discovering the First Complex Life Mark A. S. McMenamin C Columbia University Press New York C Columbia University Press Publishers Since 1893 New York Chichester, West Sussex Copyright © 1998 Columbia University Press All rights reserved Library of Congress Cataloging-in-Publication Data McMenamin, Mark A. The garden of Ediacara : discovering the first complex life / Mark A. S. McMenamin. p. cm. Includes bibliographical references and index. ISBN 0-231-10558-4 (cloth) — ISBN 0–231–10559–2 (pbk.) 1. Paleontology—Precambrian. 2. Fossils. I. Title. QE724.M364 1998 560'.171—dc21 97-38073 Casebound editions of Columbia University Press books are printed on permanent and durable acid-free paper. Printed in the United States of America c 10 9 8 7 6 5 4 3 2 1 p 10 9 8 7 6 5 4 3 2 1 For Gene Foley Desert Rat par excellence and to the memory of Professor Gonzalo Vidal This page intentionally left blank Contents Foreword • ix Preface • xiii Acknowledgments • xv 1. Mystery Fossil 1 2. The Sand Menagerie 11 3. Vermiforma 47 4. The Nama Group 61 5. Back to the Garden 121 6. Cloudina 157 7. Ophrydium 167 8. Reunite Rodinia! 173 9. The Mexican Find: Sonora 1995 189 10. The Lost World 213 11. A Family Tree 225 12. Awareness of Ediacara 239 13. Revenge of the Mole Rats 255 Epilogue: Parallel Evolution • 279 Appendix • 283 Index • 285 This page intentionally left blank Foreword Dorion Sagan Virtually as soon as earth’s crust cools enough to be hospitable to life, we find evidence of life on its surface.