Introduction to the Chlorophyta
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Early Photosynthetic Eukaryotes Inhabited Low-Salinity Habitats
Early photosynthetic eukaryotes inhabited PNAS PLUS low-salinity habitats Patricia Sánchez-Baracaldoa,1, John A. Ravenb,c, Davide Pisanid,e, and Andrew H. Knollf aSchool of Geographical Sciences, University of Bristol, Bristol BS8 1SS, United Kingdom; bDivision of Plant Science, University of Dundee at the James Hutton Institute, Dundee DD2 5DA, United Kingdom; cPlant Functional Biology and Climate Change Cluster, University of Technology Sydney, Ultimo, NSW 2007, Australia; dSchool of Biological Sciences, University of Bristol, Bristol BS8 1TH, United Kingdom; eSchool of Earth Sciences, University of Bristol, Bristol BS8 1TH, United Kingdom; and fDepartment of Organismic and Evolutionary Biology, Harvard University, Cambridge, MA 02138 Edited by Peter R. Crane, Oak Spring Garden Foundation, Upperville, Virginia, and approved July 7, 2017 (received for review December 7, 2016) The early evolutionary history of the chloroplast lineage remains estimates for the origin of plastids ranging over 800 My (7). At the an open question. It is widely accepted that the endosymbiosis that same time, the ecological setting in which this endosymbiotic event established the chloroplast lineage in eukaryotes can be traced occurred has not been fully explored (8), partly because of phy- back to a single event, in which a cyanobacterium was incorpo- logenetic uncertainties and preservational biases of the fossil re- rated into a protistan host. It is still unclear, however, which cord. Phylogenomics and trait evolution analysis have pointed to a Cyanobacteria are most closely related to the chloroplast, when the freshwater origin for Cyanobacteria (9–11), providing an approach plastid lineage first evolved, and in what habitats this endosym- to address the early diversification of terrestrial biota for which the biotic event occurred. -
The Chloroplast Rpl23 Gene Cluster of Spirogyra Maxima (Charophyceae) Shares Many Similarities with the Angiosperm Rpl23 Operon
Algae Volume 17(1): 59-68, 2002 The Chloroplast rpl23 Gene Cluster of Spirogyra maxima (Charophyceae) Shares Many Similarities with the Angiosperm rpl23 Operon Jungho Lee* and James R. Manhart Department of Biology, Texas A&M University, College Station, TX, 77843-3258, U.S.A. A phylogenetic affinity between charophytes and embryophytes (land plants) has been explained by a few chloro- plast genomic characters including gene and intron (Manhart and Palmer 1990; Baldauf et al. 1990; Lew and Manhart 1993). Here we show that a charophyte, Spirogyra maxima, has the largest operon of angiosperm chloroplast genomes, rpl23 operon (trnI-rpl23-rpl2-rps19-rpl22-rps3-rpl16-rpl14-rps8-infA-rpl36-rps11-rpoA) containing both embryophyte introns, rpl16.i and rpl2.i. The rpl23 gene cluster of Spirogyra contains a distinct eubacterial promoter sequence upstream of rpl23, which is the first gene of the green algal rpl23 gene cluster. This sequence is completely absent in angiosperms but is present in non-flowering plants. The results imply that, in the rpl23 gene cluster, early charophytes had at least two promoters, one upstream of trnI and another upstream of rpl23, which partially or completely lost its function in land plants. A comparison of gene clusters of prokaryotes, algal chloroplast DNAs and land plant cpDNAs indicated a loss of numerous genes in chlorophyll a+b eukaryotes. A phylogenetic analysis using presence/absence of genes and introns as characters produced trees with a strongly supported clade contain- ing chlorophyll a+b eukaryotes. Spirogyra and embryophytes formed a clade characterized by the loss of rpl5 and rps9 and the gain of trnI (CAU) and introns in rpl2 and rpl16. -
Impact of Procedural Steps and Cryopreservation Agents in the Cryopreservation of Chlorophyte Microalgae
Impact of Procedural Steps and Cryopreservation Agents in the Cryopreservation of Chlorophyte Microalgae Tony V. L. Bui, Ian L. Ross, Gisela Jakob, Ben Hankamer* Institute for Molecular Biosciences, The University of Queensland, Brisbane, Queensland, Australia Abstract The maintenance of traditional microalgae collections based on liquid and solid media is labour intensive, costly and subject to contamination and genetic drift. Cryopreservation is therefore the method of choice for the maintenance of microalgae culture collections, but success is limited for many species. Although the mechanisms underlying cryopreservation are understood in general, many technical variations are present in the literature and the impact of these are not always elaborated. This study describes two-step cryopreservation processes in which 3 microalgae strains representing different cell sizes were subjected to various experimental approaches to cryopreservation, the aim being to investigate mechanistic factors affecting cell viability. Sucrose and dimethyl sulfoxide (DMSO) were used as cryoprotectants. They were found to have a synergistic effect in the recovery of cryopreserved samples of many algal strains, with 6.5% being the optimum DMSO concentration. The effect of sucrose was shown to be due to improved cell survival and recovery after thawing by comparing the effect of sucrose on cell viability before or after cryopreservation. Additional factors with a beneficial effect on recovery were the elimination of centrifugation steps (minimizing cell damage), the reduction of cell concentration (which is proposed to reduce the generation of toxic cell wall components) and the use of low light levels during the recovery phase (proposed to reduce photooxidative damage). The use of the best conditions for each of these variables yielded an improved protocol which allowed the recovery and subsequent improved culture viability of a further 16 randomly chosen microalgae strains. -
Algae & Marine Plants of Point Reyes
Algae & Marine Plants of Point Reyes Green Algae or Chlorophyta Genus/Species Common Name Acrosiphonia coalita Green rope, Tangled weed Blidingia minima Blidingia minima var. vexata Dwarf sea hair Bryopsis corticulans Cladophora columbiana Green tuft alga Codium fragile subsp. californicum Sea staghorn Codium setchellii Smooth spongy cushion, Green spongy cushion Trentepohlia aurea Ulva californica Ulva fenestrata Sea lettuce Ulva intestinalis Sea hair, Sea lettuce, Gutweed, Grass kelp Ulva linza Ulva taeniata Urospora sp. Brown Algae or Ochrophyta Genus/Species Common Name Alaria marginata Ribbon kelp, Winged kelp Analipus japonicus Fir branch seaweed, Sea fir Coilodesme californica Dactylosiphon bullosus Desmarestia herbacea Desmarestia latifrons Egregia menziesii Feather boa Fucus distichus Bladderwrack, Rockweed Haplogloia andersonii Anderson's gooey brown Laminaria setchellii Southern stiff-stiped kelp Laminaria sinclairii Leathesia marina Sea cauliflower Melanosiphon intestinalis Twisted sea tubes Nereocystis luetkeana Bull kelp, Bullwhip kelp, Bladder wrack, Edible kelp, Ribbon kelp Pelvetiopsis limitata Petalonia fascia False kelp Petrospongium rugosum Phaeostrophion irregulare Sand-scoured false kelp Pterygophora californica Woody-stemmed kelp, Stalked kelp, Walking kelp Ralfsia sp. Silvetia compressa Rockweed Stephanocystis osmundacea Page 1 of 4 Red Algae or Rhodophyta Genus/Species Common Name Ahnfeltia fastigiata Bushy Ahnfelt's seaweed Ahnfeltiopsis linearis Anisocladella pacifica Bangia sp. Bossiella dichotoma Bossiella -
Plant Evolution an Introduction to the History of Life
Plant Evolution An Introduction to the History of Life KARL J. NIKLAS The University of Chicago Press Chicago and London CONTENTS Preface vii Introduction 1 1 Origins and Early Events 29 2 The Invasion of Land and Air 93 3 Population Genetics, Adaptation, and Evolution 153 4 Development and Evolution 217 5 Speciation and Microevolution 271 6 Macroevolution 325 7 The Evolution of Multicellularity 377 8 Biophysics and Evolution 431 9 Ecology and Evolution 483 Glossary 537 Index 547 v Introduction The unpredictable and the predetermined unfold together to make everything the way it is. It’s how nature creates itself, on every scale, the snowflake and the snowstorm. — TOM STOPPARD, Arcadia, Act 1, Scene 4 (1993) Much has been written about evolution from the perspective of the history and biology of animals, but significantly less has been writ- ten about the evolutionary biology of plants. Zoocentricism in the biological literature is understandable to some extent because we are after all animals and not plants and because our self- interest is not entirely egotistical, since no biologist can deny the fact that animals have played significant and important roles as the actors on the stage of evolution come and go. The nearly romantic fascination with di- nosaurs and what caused their extinction is understandable, even though we should be equally fascinated with the monarchs of the Carboniferous, the tree lycopods and calamites, and with what caused their extinction (fig. 0.1). Yet, it must be understood that plants are as fascinating as animals, and that they are just as important to the study of biology in general and to understanding evolutionary theory in particular. -
JJB 079 255 261.Pdf
植物研究雑誌 J. J. Jpn. Bo t. 79:255-261 79:255-261 (2004) Phylogenetic Phylogenetic Analysis of the Tetrasporalean Genus Asterococcus Asterococcus (Chlorophyceae) sased on 18S 18S Ribosomal RNA Gene Sequences Atsushi Atsushi NAKAZA WA and Hisayoshi NOZAKI Department Department of Biological Sciences ,Graduate School of Science ,University of Tokyo , Hongo Hongo 7-3-1 ,Bunkyo-ku ,Tokyo ,113 ・0033 JAPAN (Received (Received on October 30 ,2003) Nucleotide Nucleotide sequences (1642 bp) from 18S ribosomal RNA genes were analyzed for 100 100 strains of the clockwise (CW) group of Chlorophyceae to deduce the phylogenetic position position of the immotile colonial genus Asterococcus Scherffel , which is classified in the Palmellopsidaceae Palmellopsidaceae of Tetrasporales. We found that the genus Asterococcus and two uni- cellular , volvocalean genera , Lobochlamys Proschold & al. and Oogamochlamys Proschold Proschold & al., formed a robust monophyletic group , which was separated from two te 位asporalean clades , one composed of Tetraspora Link and Paulschulzia Sk 吋a and the other other containing the other palme l1 0psidacean genus Chlamydocaps αFot t. Therefore , the Tetrasporales Tetrasporales in the CW group is clearly polyphyletic and taxonomic revision of the order order and the Palmellopsidaceae is needed. Key words: 18S rRNA gene ,Asterococcus ,Palmellopsidaceae ,phylogeny ,Tetraspor- ales. ales. Asterococcus Asterococcus Scherffel (1908) is a colo- Recently , Ettl and Gartner (1 988) included nial nial green algal genus that is characterized Asterococcus in the family Palmello- by an asteroid chloroplast in the cell and psidaceae , because cells of this genus have swollen swollen gelatinous layers surrounding the contractile vacuoles and lack pseudoflagella immotile immotile colony (e. g. -
Lobo MTMPS (2019) First Record of Tetraspora Gelatinosa (Vaucher) Desvaux (Tetrasporales, Chlorophyceae) in the State of Goiás, Central-Western Brazil
15 1 NOTES ON GEOGRAPHIC DISTRIBUTION Check List 15 (1): 143–147 https://doi.org/10.15560/15.1.143 First record of Tetraspora gelatinosa Link ex Desvaux (Tetrasporales, Chlorophyceae) in the state of Goiás, Central-Western Brazil Weliton José da Silva1, Ina de Souza Nogueira2, Maria Tereza Morais Pereira Souza Lobo3 1 Universidade Estadual de Londrina, Centro de Ciências Biológicas, Departamento de Biologia Animal e Vegetal, Laboratório de Microalgas Continentais, Rodovia Celso Garcia Cid, Pr 445 Km 380, CEP 86057-970, Londrina, PR, Brazil. 2 Universidade Federal de Goiás, Instituto de Ciências Biológicas, Departamento de Botânica, Laboratório de Análise de Gerenciamento Ambiental de Recursos Hídricos, Alameda Palmeiras Quadra I - Lote i2, CEP 74690-900, Goiânia, GO, Brazil. 3 Universidade Federal de Goiás, Programa de Pós-graduação em Ciências Ambientais, Laboratório de Análise de Gerenciamento Ambiental de Recursos Hídricos, Alameda Palmeiras Quadra I - Lote i2, CEP 74690-900, Goiânia, GO, Brazil. Corresponding author: Weliton José da Silva, [email protected] Abstract Tetraspora gelatinosa is rare and has been recorded only in 3 Brazilian states since the 2000s. The flora of the state of Goiás is incipiently known, but there is no record of Tetraspora thus far. We record the occurrence of T. gelatinosa in Goiás and characterize this species’ morphology and ecological preferences. Specimens were found in the Samambaia Reservoir, Goiânia, Goiás. Physical and chemical characteristics of the water were measured. Where T. gelatinosa was found, the water was shallow and characterized as ultraoligotrophic. These conditions agree with those reported for other environments in Brazil. Key words Algae, Meia Ponte river basin, new record, rare species, ultraoligotrophic. -
Old Woman Creek National Estuarine Research Reserve Management Plan 2011-2016
Old Woman Creek National Estuarine Research Reserve Management Plan 2011-2016 April 1981 Revised, May 1982 2nd revision, April 1983 3rd revision, December 1999 4th revision, May 2011 Prepared for U.S. Department of Commerce Ohio Department of Natural Resources National Oceanic and Atmospheric Administration Division of Wildlife Office of Ocean and Coastal Resource Management 2045 Morse Road, Bldg. G Estuarine Reserves Division Columbus, Ohio 1305 East West Highway 43229-6693 Silver Spring, MD 20910 This management plan has been developed in accordance with NOAA regulations, including all provisions for public involvement. It is consistent with the congressional intent of Section 315 of the Coastal Zone Management Act of 1972, as amended, and the provisions of the Ohio Coastal Management Program. OWC NERR Management Plan, 2011 - 2016 Acknowledgements This management plan was prepared by the staff and Advisory Council of the Old Woman Creek National Estuarine Research Reserve (OWC NERR), in collaboration with the Ohio Department of Natural Resources-Division of Wildlife. Participants in the planning process included: Manager, Frank Lopez; Research Coordinator, Dr. David Klarer; Coastal Training Program Coordinator, Heather Elmer; Education Coordinator, Ann Keefe; Education Specialist Phoebe Van Zoest; and Office Assistant, Gloria Pasterak. Other Reserve staff including Dick Boyer and Marje Bernhardt contributed their expertise to numerous planning meetings. The Reserve is grateful for the input and recommendations provided by members of the Old Woman Creek NERR Advisory Council. The Reserve is appreciative of the review, guidance, and council of Division of Wildlife Executive Administrator Dave Scott and the mapping expertise of Keith Lott and the late Steve Barry. -
Constancea: Publications of P.C. Silva 12/13/2002 11:23:15 AM Constancea 83, 2002 University and Jepson Herbaria P.C
Constancea: Publications of P.C. Silva 12/13/2002 11:23:15 AM Constancea 83, 2002 University and Jepson Herbaria P.C. Silva Festschrift Publications of Paul C. Silva Research papers and books 1. Generic names of algae proposed for conservation. Hydrobiologia 2(3): 252–280. 1950. 2. The genus Codium in California with observations on the structure of the walls of the utricles. Univ. Calif. Publ. Bot. 25(2): 79–114, pls. 1–6, 32 text−figs. 1951. 3. A review of nomenclatural conservation in the algae from the point of view of the type method. Univ. Calif. Publ. Bot. 25(4): 241–324. 1952. 4. Codium Stackhouse. In L.E. Egerod, An analysis of the siphonous Chlorophycophyta with special reference to the Siphonocladales, Siphonales, and Dasycladales of Hawaii. Univ. Calif. Publ. Bot. 25(5): 381–395, pls. 34b–36, text−figs. 11–18. 1952. 5. (E.Y. Dawson & P.C. Silva) Bossea Manza. In E.Y. Dawson, Marine red algae of Pacific Mexico. Part I. Allan Hancock Pacific Exped. 17(1): 150–161, pl. 8: figs. 1, 2, 4–8; pl. 24: fig. 2; pl. 25: fig. 2; pl. 26: fig. 2; pl. 32. 1953. 6. (P.C. Silva & R.C. Starr) Difficulties in applying the International Code of Botanical Nomenclature to certain unicellular algae, with special reference to Chlorococcum. Svensk Bot. Tidskr. 47(2): 235–247. 1953. 7. (P.C. Silva & G.F. Papenfuss) A systematic study of the algae of sewage oxidation ponds. Calif. State Water Pollution Control Board Publ. 7. 35 pp., 34 figs., 6 tables. -
Plant Life MagillS Encyclopedia of Science
MAGILLS ENCYCLOPEDIA OF SCIENCE PLANT LIFE MAGILLS ENCYCLOPEDIA OF SCIENCE PLANT LIFE Volume 4 Sustainable Forestry–Zygomycetes Indexes Editor Bryan D. Ness, Ph.D. Pacific Union College, Department of Biology Project Editor Christina J. Moose Salem Press, Inc. Pasadena, California Hackensack, New Jersey Editor in Chief: Dawn P. Dawson Managing Editor: Christina J. Moose Photograph Editor: Philip Bader Manuscript Editor: Elizabeth Ferry Slocum Production Editor: Joyce I. Buchea Assistant Editor: Andrea E. Miller Page Design and Graphics: James Hutson Research Supervisor: Jeffry Jensen Layout: William Zimmerman Acquisitions Editor: Mark Rehn Illustrator: Kimberly L. Dawson Kurnizki Copyright © 2003, by Salem Press, Inc. All rights in this book are reserved. No part of this work may be used or reproduced in any manner what- soever or transmitted in any form or by any means, electronic or mechanical, including photocopy,recording, or any information storage and retrieval system, without written permission from the copyright owner except in the case of brief quotations embodied in critical articles and reviews. For information address the publisher, Salem Press, Inc., P.O. Box 50062, Pasadena, California 91115. Some of the updated and revised essays in this work originally appeared in Magill’s Survey of Science: Life Science (1991), Magill’s Survey of Science: Life Science, Supplement (1998), Natural Resources (1998), Encyclopedia of Genetics (1999), Encyclopedia of Environmental Issues (2000), World Geography (2001), and Earth Science (2001). ∞ The paper used in these volumes conforms to the American National Standard for Permanence of Paper for Printed Library Materials, Z39.48-1992 (R1997). Library of Congress Cataloging-in-Publication Data Magill’s encyclopedia of science : plant life / edited by Bryan D. -
The Moss-Back Alga (Cladophorophyceae, Chlorophyta) on Two Species of Freshwater Turtles in the Kimberleys
Telopea 12(2) 279–284 The moss-back alga (Cladophorophyceae, Chlorophyta) on two species of freshwater turtles in the Kimberleys Stephen Skinner1,2, Nancy FitzSimmons3 and Timothy J. Entwisle1 1National Herbarium of New South Wales, Mrs Macquaries Road, Sydney NSW 2000 Australia 2Southern ACT Catchment Group Inc., PO Box 2056, Kambah, ACT Author for correspondence: [email protected] 3Institute for Applied Ecology, School of Resource, Environmental & Heritage Sciences, University of Canberra, Canberra, ACT 2601, Australia Abstract The range of the Australian freshwater alga Basicladia ramulosa Ducker is extended, both in its turtle hosts (Chelodina burrungandjii Thomson et al.; Emydura australis (Grey)) and in geography, to tropical northern Western Australia. Along with further morphological observations, sporangia are described for the first time in this taxon. Introduction Moss-back turtles (Fig. 1) have fascinated biologists for many years. While the carapace of a potentially amphibious turtle would be a challenging habitat for most aquatic organisms, it is perhaps surprising there are only a handful of attached algae reported from such sites. Edgren et al. (1953) detailed the range of host turtles then known in North America and the range of epizoic algae that included Rhizoclonium and Cladophora. Two further genera in the Cladophoraceae are the only macroalgae widely reported on turtle carapaces: the prostrate, spreading, endozoic (and possibly disease causing) Dermatophyton radicans Peter, and species of the heterotrichous genus Basicladia, responsible for the name ‘moss-back’. In the United States, Basicladia is considered a small epizoic genus on turtles and water snails, of three to four taxa (John 2003). Hamilton (1948) described sexual reproduction in North American species of Basicladia involving the fusion of biflagellate zooids as is commonly the case in the Cladophoraceae. -
Tropical Coralline Algae (Diurnal Response)
Burdett, Heidi L. (2013) DMSP dynamics in marine coralline algal habitats. PhD thesis. http://theses.gla.ac.uk/4108/ Copyright and moral rights for this thesis are retained by the author A copy can be downloaded for personal non-commercial research or study This thesis cannot be reproduced or quoted extensively from without first obtaining permission in writing from the Author The content must not be changed in any way or sold commercially in any format or medium without the formal permission of the Author When referring to this work, full bibliographic details including the author, title, awarding institution and date of the thesis must be given Glasgow Theses Service http://theses.gla.ac.uk/ [email protected] DMSP Dynamics in Marine Coralline Algal Habitats Heidi L. Burdett MSc BSc (Hons) University of Plymouth Submitted in fulfilment of the requirements for the Degree of Doctor of Philosophy School of Geographical and Earth Sciences College of Science and Engineering University of Glasgow March 2013 © Heidi L. Burdett, 2013 ii Dedication In loving memory of my Grandads; you may not get to see this in person, but I hope it makes you proud nonetheless. John Hewitson Burdett 1917 – 2012 and Denis McCarthy 1923 - 1998 Heidi L. Burdett March 2013 iii Abstract Dimethylsulphoniopropionate (DMSP) is a dimethylated sulphur compound that appears to be produced by most marine algae and is a major component of the marine sulphur cycle. The majority of research to date has focused on the production of DMSP and its major breakdown product, the climatically important gas dimethylsulphide (DMS) (collectively DMS/P), by phytoplankton in the open ocean.