Airborne Microalgae: Insights, Opportunities, and Challenges
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Impact of Procedural Steps and Cryopreservation Agents in the Cryopreservation of Chlorophyte Microalgae
Impact of Procedural Steps and Cryopreservation Agents in the Cryopreservation of Chlorophyte Microalgae Tony V. L. Bui, Ian L. Ross, Gisela Jakob, Ben Hankamer* Institute for Molecular Biosciences, The University of Queensland, Brisbane, Queensland, Australia Abstract The maintenance of traditional microalgae collections based on liquid and solid media is labour intensive, costly and subject to contamination and genetic drift. Cryopreservation is therefore the method of choice for the maintenance of microalgae culture collections, but success is limited for many species. Although the mechanisms underlying cryopreservation are understood in general, many technical variations are present in the literature and the impact of these are not always elaborated. This study describes two-step cryopreservation processes in which 3 microalgae strains representing different cell sizes were subjected to various experimental approaches to cryopreservation, the aim being to investigate mechanistic factors affecting cell viability. Sucrose and dimethyl sulfoxide (DMSO) were used as cryoprotectants. They were found to have a synergistic effect in the recovery of cryopreserved samples of many algal strains, with 6.5% being the optimum DMSO concentration. The effect of sucrose was shown to be due to improved cell survival and recovery after thawing by comparing the effect of sucrose on cell viability before or after cryopreservation. Additional factors with a beneficial effect on recovery were the elimination of centrifugation steps (minimizing cell damage), the reduction of cell concentration (which is proposed to reduce the generation of toxic cell wall components) and the use of low light levels during the recovery phase (proposed to reduce photooxidative damage). The use of the best conditions for each of these variables yielded an improved protocol which allowed the recovery and subsequent improved culture viability of a further 16 randomly chosen microalgae strains. -
JJB 079 255 261.Pdf
植物研究雑誌 J. J. Jpn. Bo t. 79:255-261 79:255-261 (2004) Phylogenetic Phylogenetic Analysis of the Tetrasporalean Genus Asterococcus Asterococcus (Chlorophyceae) sased on 18S 18S Ribosomal RNA Gene Sequences Atsushi Atsushi NAKAZA WA and Hisayoshi NOZAKI Department Department of Biological Sciences ,Graduate School of Science ,University of Tokyo , Hongo Hongo 7-3-1 ,Bunkyo-ku ,Tokyo ,113 ・0033 JAPAN (Received (Received on October 30 ,2003) Nucleotide Nucleotide sequences (1642 bp) from 18S ribosomal RNA genes were analyzed for 100 100 strains of the clockwise (CW) group of Chlorophyceae to deduce the phylogenetic position position of the immotile colonial genus Asterococcus Scherffel , which is classified in the Palmellopsidaceae Palmellopsidaceae of Tetrasporales. We found that the genus Asterococcus and two uni- cellular , volvocalean genera , Lobochlamys Proschold & al. and Oogamochlamys Proschold Proschold & al., formed a robust monophyletic group , which was separated from two te 位asporalean clades , one composed of Tetraspora Link and Paulschulzia Sk 吋a and the other other containing the other palme l1 0psidacean genus Chlamydocaps αFot t. Therefore , the Tetrasporales Tetrasporales in the CW group is clearly polyphyletic and taxonomic revision of the order order and the Palmellopsidaceae is needed. Key words: 18S rRNA gene ,Asterococcus ,Palmellopsidaceae ,phylogeny ,Tetraspor- ales. ales. Asterococcus Asterococcus Scherffel (1908) is a colo- Recently , Ettl and Gartner (1 988) included nial nial green algal genus that is characterized Asterococcus in the family Palmello- by an asteroid chloroplast in the cell and psidaceae , because cells of this genus have swollen swollen gelatinous layers surrounding the contractile vacuoles and lack pseudoflagella immotile immotile colony (e. g. -
Optimizing the Productivity and Sustainability of Algal
OPTIMIZING THE PRODUCTIVITY AND SUSTAINABILITY OF ALGAL BIOFUEL SYSTEMS: INVESTIGATING THE BENEFITS OF ALGAL DIVERSITY AND UTILIZING BREWERY WASTEWATER FOR CULTIVATION By Jakob Owen Nalley A DISSERTATION Submitted to Michigan State University in partial fulfillment of the requirements for the degree of Integrative Biology—Doctor of Philosophy Ecology, Evolutionary Biology and Behavior—Dual Major 2016 ABSTRACT OPTIMIZING THE PRODUCTIVITY AND SUSTAINABILITY OF ALGAL BIOFUEL SYSTEMS: INVESTIGATING THE BENEFITS OF ALGAL DIVERSITY AND UTILIZING BREWERY WASTEWATER FOR CULTIVATION By Jakob Owen Nalley The era of inexpensive fossil fuels is coming to a close, while society is beginning to grapple with the byproducts of their combustion. Identifying alternative and more sustainable energy sources is of the utmost importance. One extremely promising option is biofuel derived from microalgae. Although algal biofuels have the capability to generate a substantial amount of biodiesel, there are a number of limitations that are hindering its commercialization. In this dissertation, I examine two main limitations concerning the economic and environmental sustainability of mass algal cultivation: (1) achieving and maintaining high algal productivity and (2) identifying an inexpensive water and nutrient source. Through the application of some core principles of ecological theory and employing a trait-based approach, I will illustrate how fostering algal diversity within these biofuel systems can lead to high productivity and stability. Knowledge of algal eco-physiological traits is essential for assembling optimal algal communities. Thus, I conducted a large thermal trait survey for 25 different algal species to better understand their biomass and fatty acid production across a range of temperatures. Finally, I will present two experiments I conducted investigating the feasibility of coupling algal cultivation with wastewater remediation generated at breweries. -
Altitudinal Zonation of Green Algae Biodiversity in the French Alps
Altitudinal Zonation of Green Algae Biodiversity in the French Alps Adeline Stewart, Delphine Rioux, Fréderic Boyer, Ludovic Gielly, François Pompanon, Amélie Saillard, Wilfried Thuiller, Jean-Gabriel Valay, Eric Marechal, Eric Coissac To cite this version: Adeline Stewart, Delphine Rioux, Fréderic Boyer, Ludovic Gielly, François Pompanon, et al.. Altitu- dinal Zonation of Green Algae Biodiversity in the French Alps. Frontiers in Plant Science, Frontiers, 2021, 12, pp.679428. 10.3389/fpls.2021.679428. hal-03258608 HAL Id: hal-03258608 https://hal.archives-ouvertes.fr/hal-03258608 Submitted on 11 Jun 2021 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. fpls-12-679428 June 4, 2021 Time: 14:28 # 1 ORIGINAL RESEARCH published: 07 June 2021 doi: 10.3389/fpls.2021.679428 Altitudinal Zonation of Green Algae Biodiversity in the French Alps Adeline Stewart1,2,3, Delphine Rioux3, Fréderic Boyer3, Ludovic Gielly3, François Pompanon3, Amélie Saillard3, Wilfried Thuiller3, Jean-Gabriel Valay2, Eric Maréchal1* and Eric Coissac3* on behalf of The ORCHAMP Consortium 1 Laboratoire de Physiologie Cellulaire et Végétale, CEA, CNRS, INRAE, IRIG, Université Grenoble Alpes, Grenoble, France, 2 Jardin du Lautaret, CNRS, Université Grenoble Alpes, Grenoble, France, 3 Université Grenoble Alpes, Université Savoie Mont Blanc, CNRS, LECA, Grenoble, France Mountain environments are marked by an altitudinal zonation of habitat types. -
Species Diversity of Pelagic Algae in Lake Kivu (East Africa)
Cryptogamie,Algol., 2007, 28 (3): 245-269 © 2007 Adac. Tous droits réservés Species diversity of pelagic algae in Lake Kivu (East Africa) Hugo SARMENTO a,b*, MariaLEITAO b , MayaSTOYNEVA c , PierreCOMPÈRE d ,Alain COUTÉ e ,MwapuISUMBISHO a,f &Jean-PierreDESCY a a Laboratory of Freshwater Ecology, URBO, Department of Biology, University of Namur,B-5000 Namur,Belgium b Bi-Eau,F-4900 Angers,France c Department of Botany, Faculty of Biology, Sofia University “St Kliment Ohridski”, 1164 Sofia, Bulgaria d Jardin Botanique National de Belgique,B-1860 Meise,Belgium e Muséum d’Histoire Naturelle de Paris,Département RDDM, CP 39, 57 rue Cuvier,F-75231 Paris Cedex 05,France f Institut Supérieur Pédagogique de Bukavu, UERHA, Bukavu,D. R. of Congo (Received 24 April 2006, accepted 29 August 2006) Abstract – With regard to pelagic algae, Lake Kivu is the least known among the East- African Great Lakes. The data available on its phytoplanktic communities are limited, dispersed or outdated. This study presents floristic data obtained from the first long term monitoring survey ever made in Lake Kivu (over two and a half years). Samples were collected twice a month from the southern basin, and twice a year (once in each season) from the northern, eastern and western basins. In open lake habitats, the four basins presented similar species composition. The most common species were the pennate diatoms Nitzschia bacata Hust. and Fragilaria danica (Kütz.) Lange-Bert., and the cyanobacteria Planktolyngbya limnetica Lemm. and Synechococcus sp. The centric diatom Urosolenia sp. and the cyanobacterium Microcystis sp. were also very abundant, mostly near the surface under daily stratification conditions. -
A Taxonomic Reassessment of Chlamydomonas Meslinii (Volvocales, Chlorophyceae) with a Description of Paludistella Gen.Nov
Phytotaxa 432 (1): 065–080 ISSN 1179-3155 (print edition) https://www.mapress.com/j/pt/ PHYTOTAXA Copyright © 2020 Magnolia Press Article ISSN 1179-3163 (online edition) https://doi.org/10.11646/phytotaxa.432.1.6 A taxonomic reassessment of Chlamydomonas meslinii (Volvocales, Chlorophyceae) with a description of Paludistella gen.nov. HANI SUSANTI1,6, MASAKI YOSHIDA2, TAKESHI NAKAYAMA2, TAKASHI NAKADA3,4 & MAKOTO M. WATANABE5 1Life Science Innovation, School of Integrative and Global Major, University of Tsukuba, 1-1-1 Tennodai, Tsukuba, Ibaraki, 305-8577, Japan. 2Faculty of Life and Environmental Sciences, University of Tsukuba, 1-1-1 Tennodai, Tsukuba 305-8577, Japan. 3Institute for Advanced Biosciences, Keio University, Tsuruoka, Yamagata, 997-0052, Japan. 4Systems Biology Program, Graduate School of Media and Governance, Keio University, Fujisawa, Kanagawa, 252-8520, Japan. 5Algae Biomass Energy System Development and Research Center, University of Tsukuba. 6Research Center for Biotechnology, Indonesian Institute of Sciences, Jl. Raya Bogor KM 46 Cibinong West Java, Indonesia. Corresponding author: [email protected] Abstract Chlamydomonas (Volvocales, Chlorophyceae) is a large polyphyletic genus that includes numerous species that should be classified into independent genera. The present study aimed to examine the authentic strain of Chlamydomonas meslinii and related strains based on morphological and molecular data. All the strains possessed an asteroid chloroplast with a central pyrenoid and hemispherical papilla; however, they were different based on cell and stigmata shapes. Molecular phylogenetic analyses based on 18S rDNA, atpB, and psaB indicated that the strains represented a distinct subclade in the clade Chloromonadinia. The secondary structure of ITS-2 supported the separation of the strains into four species. -
Acidophilic Green Algal Genome Provides Insights Into Adaptation to an Acidic Environment
Acidophilic green algal genome provides insights into adaptation to an acidic environment Shunsuke Hirookaa,b,1, Yuu Hirosec, Yu Kanesakib,d, Sumio Higuchie, Takayuki Fujiwaraa,b,f, Ryo Onumaa, Atsuko Eraa,b, Ryudo Ohbayashia, Akihiro Uzukaa,f, Hisayoshi Nozakig, Hirofumi Yoshikawab,h, and Shin-ya Miyagishimaa,b,f,1 aDepartment of Cell Genetics, National Institute of Genetics, Shizuoka 411-8540, Japan; bCore Research for Evolutional Science and Technology, Japan Science and Technology Agency, Saitama 332-0012, Japan; cDepartment of Environmental and Life Sciences, Toyohashi University of Technology, Aichi 441-8580, Japan; dNODAI Genome Research Center, Tokyo University of Agriculture, Tokyo 156-8502, Japan; eResearch Group for Aquatic Plants Restoration in Lake Nojiri, Nojiriko Museum, Nagano 389-1303, Japan; fDepartment of Genetics, Graduate University for Advanced Studies, Shizuoka 411-8540, Japan; gDepartment of Biological Sciences, Graduate School of Science, University of Tokyo, Tokyo 113-0033, Japan; and hDepartment of Bioscience, Tokyo University of Agriculture, Tokyo 156-8502, Japan Edited by Krishna K. Niyogi, Howard Hughes Medical Institute, University of California, Berkeley, CA, and approved August 16, 2017 (received for review April 28, 2017) Some microalgae are adapted to extremely acidic environments in pumps that biotransform arsenic and archaeal ATPases, which which toxic metals are present at high levels. However, little is known probably contribute to the algal heat tolerance (8). In addition, the about how acidophilic algae evolved from their respective neutrophilic reduction in the number of genes encoding voltage-gated ion ancestors by adapting to particular acidic environments. To gain channels and the expansion of chloride channel and chloride car- insights into this issue, we determined the draft genome sequence rier/channel families in the genome has probably contributed to the of the acidophilic green alga Chlamydomonas eustigma and per- algal acid tolerance (8). -
A Study on the Phytoplankton of Hasan UĞURLU Dam Lake (Samsun-Turkey)
Tr. J. of Biology 22 (1998) 447-461 © TÜBİTAK A Study on the Phytoplankton of Hasan UĞURLU Dam Lake (Samsun-Turkey) Arif GÖNÜLOL Ondokuz Mayıs University, Science and Arts Faculty, Department Biology Kurupelit, Samsun-TURKEY Olcay OBALI Ankara University, Faculty of Science, Department Biology Beşevler, Ankara-TURKEY Received: 27.09.1996 Abstract: The composition and seasonal variations of phytoplankton of Hasan UĞURLU Dam Lake were studied using samples collected from two stations between July 1992 to December 1993. 57 taxa were identified belonging to the Bacillariophyta, Chlorophyta, Cyanophyta, Dinophyta and Euglenophyta divisions of phytoplankton. In the phytoplankton, Asterionella formosa, Cyclotella planc- tonica, Pediastrum simplex and Ceratium hirundinella caused water blooms in certain months. The light density and temperature affected the composition and seasonal variations in phytoplankton considerably. Nutrient levels in the lake did not limit the seasonal variations in phytoplankton. It was determined that Lake Hasan Uğurlu had mesotrophic characteristics because of the morpho- metric structure, physical and chemical properties of the water and a phytoplankton type which caused water blooming by various taxa during certain months Key Words: Phytoplankton Hasan Uğurlu Baraj Gölü (Samsun-Türkiye) Fitoplanktonu Üzerinde Bir Araştırma Özet: Hasan Uğurlu Baraj Gölü fitoplankton topluluğu ve mevsimsel değişimi iki istasyondan alınan örneklerde, Temmuz 1992 - Aralık 1993 tarihleri arasında araştırılmıştır. Fitoplanktonda Bacillariophyta, -
The Green Puzzle Stichococcus (Trebouxiophyceae, Chlorophyta): New Generic and Species Concept Among This Widely Distributed Genus
Phytotaxa 441 (2): 113–142 ISSN 1179-3155 (print edition) https://www.mapress.com/j/pt/ PHYTOTAXA Copyright © 2020 Magnolia Press Article ISSN 1179-3163 (online edition) https://doi.org/10.11646/phytotaxa.441.2.2 The green puzzle Stichococcus (Trebouxiophyceae, Chlorophyta): New generic and species concept among this widely distributed genus THOMAS PRÖSCHOLD1,3* & TATYANA DARIENKO2,4 1 University of Innsbruck, Research Department for Limnology, A-5310 Mondsee, Austria 2 University of Göttingen, Albrecht-von-Haller-Institute of Plant Sciences, Experimental Phycology and Sammlung für Algenkulturen, D-37073 Göttingen, Germany 3 [email protected]; http://orcid.org/0000-0002-7858-0434 4 [email protected]; http://orcid.org/0000-0002-1957-0076 *Correspondence author Abstract Phylogenetic analyses have revealed that the traditional order Prasiolales, which contains filamentous and pseudoparenchy- matous genera Prasiola and Rosenvingiella with complex life cycle, also contains taxa of more simple morphology such as coccoids like Pseudochlorella and Edaphochlorella or rod-like organisms like Stichococcus and Pseudostichococcus (called Prasiola clade of the Trebouxiophyceae). Recent studies have shown a high biodiversity among these organisms and questioned the traditional generic and species concept. We studied 34 strains assigned as Stichococcus, Pseudostichococcus, Diplosphaera and Desmocococcus. Phylogenetic analyses using a multigene approach revealed that these strains belong to eight independent lineages within the Prasiola clade of the Trebouxiophyceae. For testing if these lineages represent genera, we studied the secondary structures of SSU and ITS rDNA sequences to find genetic synapomorphies. The secondary struc- ture of the V9 region of SSU is diagnostic to support the proposal for separation of eight genera. -
Survey of Freshwater Algae from Karachi, Pakistan
Pak. J. Bot., 41(2): 861-870, 2009. SURVEY OF FRESHWATER ALGAE FROM KARACHI, PAKISTAN R. ALIYA1, A. ZARINA2 AND MUSTAFA SHAMEEL1 1Department of Botany, University of Karachi, Karachi-75270, Pakistan 2Department of Botany, Federal Urdu University of Arts, Science & Technology, Gulshan-e-Iqbal Campus, Karachi-75300, Pakistan. Abstract Altogether 214 species of algae belonging to 86 genera of 33 families, 15 orders, 10 classes and 6 phyla were collected from various freshwater habitats in three towns of Karachi City during May 2004 and September 2005. Among various phyla, Cyanophycota was represented by 82 species (38.32%), Volvophycota by 78 species (36.45%), Euglenophycota by 4 species (1.87%), Chrysophycota by 2 species (0.93%), Bacillarophycota by 38 species (17.76%) and Chlorophycota by 10 species (4.67%). Members of the phyla Cyanophycota and Volvophycota were most prevalent (74.8%) and those of Euglenophycota and Chrysophycota poorly represented (2.8%). Introduction Karachi, the largest city of Pakistan is spread over a vast area of 3,530 km2 and includes a variety of ponds, streams, water falls, artificial and natural water reservoirs and two small ephemeral rivers with their branchlets, which inhabit several groups of freshwater algae. Only a few studies have been carried out in the past on different groups of these algae, either from a point of view of their habitats and general occurrence (Parvaiz & Ahmed, 1981; Shameel & Butt, 1984; Aisha & Hasni, 1991; Aisha & Zahid, 1991; Leghari et al., 2002) or from taxonomic viewpoint (Salim, 1954; Aizaz & Farooqui, 1972; Farzana & Nizamuddin, 1979; Ahmed et al., 1983). Recently, a study was made on the occurrence of algae within Karachi University Campus (Mehwish & Aliya, 2005). -
UNIVERSITÉ DE SHERBROOKE Faculté De Génie Département De Génie Chimique Et Génie Biotechnologique
UNIVERSITÉ DE SHERBROOKE Faculté de génie Département de génie chimique et génie biotechnologique UTILISATION DU LACTOSÉRUM DANS UN PROCÉDÉ DE CULTURE DE MICROALGUES MIXOTROPHES POUR LA PRODUCTION DE BIODIESEL Thèse de doctorat Spécialité : génie biotechnologique Jean-Michel Bergeron Girard Jury : Michèle Heitz (directrice) Jean-Sébastien Deschênes (co-directeur) Réjean Tremblay (co-directeur) Nathalie Faucheux (co-directrice) J. Peter Jones (rapporteur) Isabelle Marcotte (évaluatrice externe) Joël Sirois (évaluateur interne) Sherbrooke (Québec) Canada Septembre 2014 À ma mère, à mon père, à ma sœur et à Maud qui cultivent avec moi la légèreté du quotidien RÉSUMÉ L‘objectif général du présent travail est la conception et le développement d‘un procédé original de culture de microalgues pour la production à grande échelle d‘huiles végétales à faible coût pour le marché du biodiesel. Une procédure multicritères de sélection de souches a d‘abord été mise au point afin d‘identifier la souche la plus susceptible de répondre favorablement aux paramètres du procédé préalablement déterminés. Cette procédure permet d‘inclure un grand nombre de critères et de considérer l‘importance relative de chacun de ces critères dans le pointage final accordé aux souches présélectionnées. Elle peut aussi être transposée à d‘autres contextes techniques et géographiques pour la sélection de souches destinées à diverses applications commerciales. Par la suite, l‘évaluation de la croissance et de la productivité lipidique de la souche sélectionnée a été effectuée au laboratoire, en mode nutritionnel mixotrophe, en présence d‘un important coproduit de l‘industrie laitière : le perméat de lactosérum. Le profil lipidique de la souche privilégiée, ainsi que sa capacité à hydrolyser le lactose, mise au jour pour la première fois, ont permis de démontrer le potentiel du procédé. -
Compartmentalization of Mrnas in the Giant, Unicellular Green Algae
bioRxiv preprint doi: https://doi.org/10.1101/2020.09.18.303206; this version posted September 18, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. 1 Compartmentalization of mRNAs in the giant, 2 unicellular green algae Acetabularia acetabulum 3 4 Authors 5 Ina J. Andresen1, Russell J. S. Orr2, Kamran Shalchian-Tabrizi3, Jon Bråte1* 6 7 Address 8 1: Section for Genetics and Evolutionary Biology, Department of Biosciences, University of 9 Oslo, Kristine Bonnevies Hus, Blindernveien 31, 0316 Oslo, Norway. 10 2: Natural History Museum, University of Oslo, Oslo, Norway 11 3: Centre for Epigenetics, Development and Evolution, Department of Biosciences, University 12 of Oslo, Kristine Bonnevies Hus, Blindernveien 31, 0316 Oslo, Norway. 13 14 *Corresponding author 15 Jon Bråte, [email protected] 16 17 Keywords 18 Acetabularia acetabulum, Dasycladales, UMI, STL, compartmentalization, single-cell, mRNA. 19 20 Abstract 21 Acetabularia acetabulum is a single-celled green alga previously used as a model species for 22 studying the role of the nucleus in cell development and morphogenesis. The highly elongated 23 cell, which stretches several centimeters, harbors a single nucleus located in the basal end. 24 Although A. acetabulum historically has been an important model in cell biology, almost 25 nothing is known about its gene content, or how gene products are distributed in the cell. To 26 study the composition and distribution of mRNAs in A.