Balancing Biosynthesis and Bioenergetics: Metabolic Programs in Oncogenesis
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• Glycolysis • Gluconeogenesis • Glycogen Synthesis
Carbohydrate Metabolism! Wichit Suthammarak – Department of Biochemistry, Faculty of Medicine Siriraj Hospital – Aug 1st and 4th, 2014! • Glycolysis • Gluconeogenesis • Glycogen synthesis • Glycogenolysis • Pentose phosphate pathway • Metabolism of other hexoses Carbohydrate Digestion! Digestive enzymes! Polysaccharides/complex carbohydrates Salivary glands Amylase Pancreas Oligosaccharides/dextrins Dextrinase Membrane-bound Microvilli Brush border Maltose Sucrose Lactose Maltase Sucrase Lactase ‘Disaccharidase’ 2 glucose 1 glucose 1 glucose 1 fructose 1 galactose Lactose Intolerance! Cause & Pathophysiology! Normal lactose digestion Lactose intolerance Lactose Lactose Lactose Glucose Small Intestine Lactase lactase X Galactose Bacteria 1 glucose Large Fermentation 1 galactose Intestine gases, organic acid, Normal stools osmotically Lactase deficiency! active molecules • Primary lactase deficiency: อาการ! genetic defect, การสราง lactase ลด ลงเมออายมากขน, พบมากทสด! ปวดทอง, ถายเหลว, คลนไสอาเจยนภาย • Secondary lactase deficiency: หลงจากรบประทานอาหารทม lactose acquired/transient เชน small bowel เปนปรมาณมาก เชนนม! injury, gastroenteritis, inflammatory bowel disease! Absorption of Hexoses! Site: duodenum! Intestinal lumen Enterocytes Membrane Transporter! Blood SGLT1: sodium-glucose transporter Na+" Na+" •! Presents at the apical membrane ! of enterocytes! SGLT1 Glucose" Glucose" •! Co-transports Na+ and glucose/! Galactose" Galactose" galactose! GLUT2 Fructose" Fructose" GLUT5 GLUT5 •! Transports fructose from the ! intestinal lumen into enterocytes! -
THE AEROBIC (Air-Robic!) PATHWAYS
THE AEROBIC (air-robic!) PATHWAYS Watch this video on aerobic glycolysis: http://ow.ly/G5djv Watch this video on oxygen use: http://ow.ly/G5dmh Energy System 1 – The Aerobic Use of Glucose (Glycolysis) This energy system involves the breakdown of glucose (carbohydrate) to release energy in the presence of oxygen. The key to this energy system is that it uses OXYGEN to supply energy. Just like the anaerobic systems, there are many negatives and positives from using this pathway. Diagram 33 below summarises the key features of this energy system. When reading the details on the table keep in mind the differences between this and the previous systems that were looked at. In this way a perspective of their features can be appreciated and applied. Diagram 33: The Key Features of the Aerobic Glycolytic System Highlight 3 key features in the diagram that are important to the functioning of this system. 1: ------------------------------------------------------------------------------------------------------------------------------------------------------- 2: ------------------------------------------------------------------------------------------------------------------------------------------------------- 3: ------------------------------------------------------------------------------------------------------------------------------------------------------- Notes ---------------------------------------------------------------------------------------------------------------------------------------------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------- -
The Effect of 2-Desoxy-D-Glucose on Glycolysis and Respiration of Tumor and Normal Tissues
The Effect of 2-Desoxy-D-glucose on Glycolysis and Respiration of Tumor and Normal Tissues GLADYSE. WOODWARDANDMARIET. HUDSON (Biochemical Research Foundation, Newark, Delaware) Inhibition of metabolism by structural analogs end of each experiment. Reaction rates are expressed of metabolites is one of the newer concepts of of dry tissue/hour, and are based on the initial steady rate. chemotherapy. It seems possible that this concept The symbols, QCOJ.Qco2>an<l Q<v are used to express, re spectively, the rates of anaerobic glycolysis, aerobic glycolysis, might be applied to cancer by use of structural and respiration. The Q values as given in the tables are from analogs of glucose to inhibit the glycolysis of the single or duplicate determinations. tumor cell, since tumor tissue in contrast to most normal tissues possesses the ability to glycolyze RESULTS glucose at a high rate both anaerobically and EFFECTop 2DG ONGLYCOLYSIS aerobically (7). It was found that 2DG in the maximum concen 2-Desoxy-D-glucose (2DG) is a structural ana tration used with each tissue did not significantly log of glucose, differing from glucose only at the affect the endogenous glycolysis of any of the tis second carbon atom by the absence of one oxygen sues studied. Calculation of the degree of inhibi atom. This analog has been shown (2) to compete tion of glucose or fructose utilization, therefore, is with glucose in the yeast fermentation system and, based on the Q values from which the correspond thereby, to inhibit fermentation of glucose. In a ing blank Q value has been subtracted. -
Bioenergetics and Metabolism Mitochondria Chloroplasts
Bioenergetics and metabolism Mitochondria Chloroplasts Peroxisomes B. Balen Chemiosmosis common pathway of mitochondria, chloroplasts and prokaryotes to harness energy for biological purposes → chemiosmotic coupling – ATP synthesis (chemi) + membrane transport (osmosis) Prokaryotes – plasma membrane → ATP production Eukaryotes – plasma membrane → transport processes – membranes of cell compartments – energy-converting organelles → production of ATP • Mitochondria – fungi, animals, plants • Plastids (chloroplasts) – plants The essential requirements for chemiosmosis source of high-energy e- membrane with embedded proton pump and ATP synthase energy from sunlight or the pump harnesses the energy of e- transfer to pump H+→ oxidation of foodstuffs is proton gradient across the membrane used to create H+ gradient + across a membrane H gradient serves as an energy store that can be used to drive ATP synthesis Figures 14-1; 14-2 Molecular Biology of the Cell (© Garland Science 2008) Electron transport processes (A) mitochondrion converts energy from chemical fuels (B) chloroplast converts energy from sunlight → electron-motive force generated by the 2 photosystems enables the chloroplast to drive electron transfer from H2O to carbohydrate → chloroplast electron transfer is opposite of electron transfer in a mitochondrion Figure 14-3 Molecular Biology of the Cell (© Garland Science 2008) Carbohydrate molecules and O2 are products of the chloroplast and inputs for the mitochondrion Figure 2-41; 2-76 Molecular Biology of the Cell (© Garland -
1 [ Reading for Lecture 7] (1) 2Nd Law of Thermodynamics: Entropy
[ Reading for lecture 7] (1) 2nd law of thermodynamics: Entropy Increases Life Decreases it’s own entropy – at the expense of the rest of the universe Most globally – takes photons (low entropy – straight line !) and converts them ultimately into heat (high entropy), with all of life in- between. To do this, life needs to gather, store and manipulate sources of Free-Energy Free energy can be thought of as the “currency” of life. Any reaction that requires free energy input (eg. making DNA from nucleic acids, doing mechanical work, building a protonmotive force) must be “paid for” by coupling to a reaction that releases free energy. This lecture: Types of biological free-energy, ways and mechanisms in which they are interconverted. These processes are essentially what life is. 1 Types of biological free-energy 2 Protonmotive force (pmf) [Protonmotive Force] (3) Electrical potential plus concentration gradient, H+ or “protons”. (see lecture 6) nb. Nernst potential is the voltage when pmf is zero, at equilibrium. Pmf is a measure of how far from equilibrium the membrane is –the “driving force” for proton transport across the membrane. Generated by active transport of protons across the membrane Free-energy sources: absorption of photons, break-down of food. pH gradient (chemical potential) is necessary if the pmf is to do significant work Very few protons need to be pumped to establish the membrane voltage, BUT… Just like charging a battery, you need to provide current as well as voltage. pH gradient also increases the free energy per proton –diffusion as well as voltage drives protons. -
Fatty Acid Biosynthesis
BI/CH 422/622 ANABOLISM OUTLINE: Photosynthesis Carbon Assimilation – Calvin Cycle Carbohydrate Biosynthesis in Animals Gluconeogenesis Glycogen Synthesis Pentose-Phosphate Pathway Regulation of Carbohydrate Metabolism Anaplerotic reactions Biosynthesis of Fatty Acids and Lipids Fatty Acids contrasts Diversification of fatty acids location & transport Eicosanoids Synthesis Prostaglandins and Thromboxane acetyl-CoA carboxylase Triacylglycerides fatty acid synthase ACP priming Membrane lipids 4 steps Glycerophospholipids Control of fatty acid metabolism Sphingolipids Isoprene lipids: Cholesterol ANABOLISM II: Biosynthesis of Fatty Acids & Lipids 1 ANABOLISM II: Biosynthesis of Fatty Acids & Lipids 1. Biosynthesis of fatty acids 2. Regulation of fatty acid degradation and synthesis 3. Assembly of fatty acids into triacylglycerol and phospholipids 4. Metabolism of isoprenes a. Ketone bodies and Isoprene biosynthesis b. Isoprene polymerization i. Cholesterol ii. Steroids & other molecules iii. Regulation iv. Role of cholesterol in human disease ANABOLISM II: Biosynthesis of Fatty Acids & Lipids Lipid Fat Biosynthesis Catabolism Fatty Acid Fatty Acid Degradation Synthesis Ketone body Isoprene Utilization Biosynthesis 2 Catabolism Fatty Acid Biosynthesis Anabolism • Contrast with Sugars – Lipids have have hydro-carbons not carbo-hydrates – more reduced=more energy – Long-term storage vs short-term storage – Lipids are essential for structure in ALL organisms: membrane phospholipids • Catabolism of fatty acids –produces acetyl-CoA –produces reducing -
Glycolysis and Glyceroneogenesis In
GLYCOLYSIS AND GLYCERONEOGENESIS IN ADIPOCYTES: EFFECTS OF ROSIGLITAZONE, AN ANTI-DIABETIC DRUG By SOREIYU UMEZU Bachelor of Science in Biochemistry and Molecular Biology Oklahoma State University Stillwater, OK 2005 Submitted to the Faculty of the Graduate College of the Oklahoma State University in partial fulfillment of the requirements for the Degree of DOCTOR OF PHILOSOPHY July, 2010 GLYCOLYSIS AND GLYCERONEOGENESIS IN ADIPOCYTES: EFFECTS OF ROSIGLITAZONE, AN ANTI-DIABETIC DRUG Dissertation Approved: Dr. Jose L Soulages Dissertation Adviser Dr. Chang-An Yu Dr. Andrew Mort Dr. Jack Dillwith Dr. A. Gordon Emslie Dean of the Graduate College ii ACKNOWLEDGMENTS First, I would like to immensely thank my advisor, Dr. Jose Soulages, for his support and guidance throughout my graduate studies. Without Dr. Soulages extensive expertise and knowledge along with his sense of humor I would not have achieved my goal of obtaining my Doctorate in Biochemistry. I would also like to thank Dr. Estela Arrese for her kind and generous advice. Both Dr. Soulages and Dr. Arrese have made a tremendous impact on me personally and professionally. I would like to thank all the members of my committee: Dr. Chang-An Yu, Dr. Andrew Mort, and Dr. Jack Dillwith who have devoted their time reading my dissertation and their patience for my procrastination. Their support and guidance has been invaluable and extremely appreciative. Most importantly, I want to acknowledge my parents: (Dr.) Mrs. Fumie Umezu and (Dr.) Mr. Yasuiki Umezu, for their unwavering support of me throughout my time in the U.S. and for suffering me while I’m doing whatever I want in my life. -
Fatty Acid Synthesis ANSC/NUTR 618 Lipids & Lipid Metabolism Fatty Acid Synthesis I
Handout 5 Fatty Acid Synthesis ANSC/NUTR 618 Lipids & Lipid Metabolism Fatty Acid Synthesis I. Overall concepts A. Definitions 1. De novo synthesis = synthesis from non-fatty acid precursors a. Carbohydrate precursors (glucose and lactate) 1) De novo fatty acid synthesis uses glucose absorbed from the diet rather than glucose synthesized by the liver. 2) De novo fatty acid synthesis uses lactate derived primarily from glucose metabolism in muscle and red blood cells. b. Amino acid precursors (e.g., alanine, branched-chain amino acids) 1) De novo fatty acid synthesis from amino acids is especially important during times of excess protein intake. 2) Use of amino acids for fatty acid synthesis may result in nitrogen overload (e.g., the Atkins diet). c. Short-chain organic acids (e.g., acetate, butyrate, and propionate) 1) The rumen of ruminants is a major site of short-chain fatty acid synthesis. 2) Only small amounts of acetate circulate in non-ruminants. 2. Lipogenesis = fatty acid or triacylglycerol synthesis a. From preformed fatty acids (from diet or de novo fatty acid synthesis) b. Requires source of carbon (from glucose or lactate) for glycerol backbone 3T3-L1 Preadipocytes at confluence. No lipid 3T3-L1 Adipocytes after 6 days of filling has yet occurred. differentiation. Dark spots are lipid droplets. 1 Handout 5 Fatty Acid Synthesis B. Tissue sites of de novo fatty acid biosynthesis 1. Liver. In birds, fish, humans, and rodents (approx. 50% of fatty acid biosynthesis). 2. Adipose tissue. All livestock species synthesize fatty acids in adipose tissue; rodents synthesize about 50% of their fatty acids in adipose tissue. -
Bioenergetics, ATP & Enzymes
Bioenergetics, ATP & Enzymes Some Important Compounds Involved in Energy Transfer and Metabolism Bioenergetics can be defined as all the energy transfer mechanisms occurring within living organisms. Energy transfer is necessary because energy cannot be created and it cannot be destroyed (1st law of thermodynamics). Organisms can acquire energy from chemicals (chemotrophs) or they can acquire it from light (phototrophs), but they cannot make it. Thermal energy (heat) from the environment can influence the rate of chemical reactions, but is not generally considered an energy source organisms can “capture” and put to specific uses. Metabolism, all the chemical reactions occurring within living organisms, is linked to bioenergetics because catabolic reactions release energy (are exergonic) and anabolic reactions require energy (are endergonic). Various types of high-energy compounds can “donate” the energy required to drive endergonic reactions, but the most commonly used energy source within cells is adenosine triphosphate (ATP), a type of coenzyme. When this molecule is catabolized (broken down), the energy released can be used to drive a wide variety of synthesis reactions. Endergonic reactions required for the synthesis of nucleic acids (DNA and RNA) are exceptions because all the nucleotides incorporated into these molecules are initially high-energy molecules as described below. The nitrogenous base here is adenine, the sugar is the pentose monosaccharide ribose and there are three phosphate groups attached. The sugar and the base form a molecule called a nucleoside, and the number of phosphate groups bound to the nucleoside is variable; thus alternative forms of this molecule occur as adenosine monophosphate (AMP) and adenosine diphosphate (ADP). -
Beta (Β)-Oxidation of Fatty Acid and Its Associated Disorders
Vol. 5 (1), pp. 158-172, December, 2018 ©Global Science Research Journals International Journal of Clinical Biochemistry Author(s) retain the copyright of this article. http://www.globalscienceresearchjournals.org/ Review Article Beta (β)-Oxidation of Fatty Acid and its associated Disorders Satyam Prakash Assistant Professor, Dept. of Biochemistry, Janaki Medical College Teaching Hospital, Janakpur, Nepal Mobile: +977-9841603704, E-mail: [email protected] Accepted 18 December, 2018 The lipids of metabolic significance in the mammalian organisms include triacylglycerols, phospholipids and steroids, together with products of their metabolism such as long-chain fatty acids, glycerol and ketone bodies. The fatty acids which are present in the triacylglycerols in the reduced form are the most abundant source of energy and provide energy twice as much as carbohydrates and proteins. Fatty acids represent an important source of energy in periods of catabolic stress related to increased muscular activity, fasting or febrile illness, where as much as 80% of the energy for the heart, skeletal muscles and liver could be derived from them. The prime pathway for the degradation of fatty acids is mitochondrial fatty acid β-oxidation (FAO). The relationship of fat oxidation with the utilization of carbohydrate as a source of energy is complex and depends upon tissue, nutritional state, exercise, development and a variety of other influences such as infection and other pathological states. Inherited defects for most of the FAO enzymes have been identified and characterized in early infancy as acute life-threatening episodes of hypoketotic, hypoglycemic coma induced by fasting or febrile illness. Therefore, this review briefly highlights mitochondrial β-oxidation of fatty acids and associated disorders with clinical manifestations. -
Main Role of Bioenergetics in Living Organisms
Bioenergetics: Open Access Editorial Main Role of Bioenergetics in Living Organisms Jean-Philippe Chaput* Healthy Active Living, Ottawa,Canada INTRODUCTION Bioenergetics is the branch of biochemistry concerned with It covers two primary processes: cellular respiration and the energy expended in the formation and breaking of photosynthesis, which both include energy transformation chemical bonds in biological molecules. Some species, such (changing from one form to another). Bioenergetics is a type of as autotrophs, may obtain energy from sunshine psychodynamic psychotherapy that integrates body and mind (photosynthesis) without consuming or breaking down work to assist people in resolving emotional issues and realising nutrients. Bioenergetics is a discipline of biology that studies their full potential for happiness and satisfaction in life. how cells convert energy, most commonly through the Psychotherapists who practice bioenergetics think there is a link production, storage, or consumption of Adenosine between the mind and the body. ATP has the structure of an Triphosphate (ATP). Most components of cellular RNA nucleotide with three phosphates bound to it. Pushing a metabolism, and thus life itself, rely on bioenergetic activities mattress and yelling; inhaling deeply into an area of emotional such cellular respiration and photosynthesis. Let's start by pain and allowing yourself to cry; or smashing a foam cube with a defining our course's theme. Bioenergetics (biological tennis racquet to engage your aggression and possibly anger or energetics) is a branch of biology that studies the processes of other emotions are examples of these exercises. Because energy is converting external sources of energy into biologically lost as metabolic heat when animals from one trophic level are relevant work in living systems. -
Ocean Life, Bioenergetics and Metabolism
Ocean life, bioenergetics and metabolism Biological Oceanography (OCN 621) Matthew Church (MSB 612) Ecosystems are hierarchically organized • Atoms → Molecules → Cells → Organisms→ Populations→ Communities • This organizational system dictates the pathways that energy and material travel through a system. • Cells are the lowest level of structure capable of performing ALL the functions of life. Classification of life Two primary cellular forms • Prokaryotes: lack internal membrane-bound organelles. Genetic information is not separated from other cell functions. Bacteria and Archaea are prokaryotes. Note however this does not imply these divisions of life are closely related. • Eukaryotes: membrane-bound organelles (nucleus, mitochrondrion, etc .). Compartmentalization (organization) of different cellular functions allows sequential intracellular activities In the ocean, microscopic organisms account for >50% of the living biomass. Controls on types of organisms, abundances, distributions • Habitat: The physical/chemical setting or characteristics of a particular environment, e.g., light vs. dark, cold vs. warm, high vs. low pressure • Each marine habitat supports a somewhat predictable assemblage of organisms that collectively make up the community, e.g., rocky intertidal community, coral reef community, abyssobenthic community • The structure and function of the individuals/populations in these communities arise from evolution and selective adaptations in response to the habitat characteristics • Niche: The role of a particular organism in an integrated community •The ocean is not homogenous: spatial and temporal variability in habitats Clearly distinguishable ocean habitats with elevated “plant” biomass in regions where nutrients are elevated The ocean is stirred more than mixed Sea Surface Temperature Chl a (°C) (mg m-3) Spatial discontinuities at various scales (basin, mesoscale, microscale) in ocean habitats play important roles in controlling plankton growth and distributions.